View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17797_high_17 (Length: 364)

Name: NF17797_high_17
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17797_high_17
NF17797_high_17
[»] chr7 (5 HSPs)
chr7 (15-235)||(1269817-1270039)
chr7 (292-346)||(1270093-1270147)
chr7 (164-204)||(5458093-5458133)
chr7 (164-204)||(22690058-22690098)
chr7 (164-204)||(44819515-44819555)
[»] chr3 (2 HSPs)
chr3 (164-206)||(47099057-47099099)
chr3 (164-204)||(4332689-4332729)
[»] scaffold0009 (1 HSPs)
scaffold0009 (161-209)||(17719-17767)
[»] chr8 (5 HSPs)
chr8 (163-210)||(39974837-39974884)
chr8 (164-206)||(10320493-10320535)
chr8 (164-206)||(42367726-42367768)
chr8 (164-204)||(5728537-5728577)
chr8 (171-207)||(40094884-40094920)
[»] chr5 (4 HSPs)
chr5 (164-206)||(11188710-11188752)
chr5 (164-206)||(15241396-15241438)
chr5 (164-205)||(36124400-36124441)
chr5 (164-204)||(36623196-36623236)
[»] chr2 (2 HSPs)
chr2 (164-206)||(20296418-20296460)
chr2 (164-204)||(346146-346186)
[»] scaffold0113 (1 HSPs)
scaffold0113 (164-205)||(37076-37117)
[»] chr1 (2 HSPs)
chr1 (165-206)||(26763566-26763607)
chr1 (164-204)||(13794530-13794570)
[»] chr6 (1 HSPs)
chr6 (292-340)||(6975405-6975453)
[»] chr4 (1 HSPs)
chr4 (164-204)||(17216151-17216191)


Alignment Details
Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 15 - 235
Target Start/End: Original strand, 1269817 - 1270039
Alignment:
Q  15 cataggaaaagagaacaaaaagaaaatgatttgaccttaatcactcaataaagagagatataattatatcaccttnnnnnnnngatatatatcataa-nn 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||        ||||||||| ||||       
T  1269817 cataggaaaagagaacaaaaagaaaatgatttgaccttaatcactcaataaagagagatatatttatatcacctt-aaaaaaagatatatattataattt 1269915  T
Q  114 nnnnnngtcaaataatctagtaaagtgtcaggagttcgaacatt--agatatatatattatgcaatattctaatcaactgagctaagctcacgggacata 211  Q
          ||||||||| ||||| | |||||| |||||||||||||  | ||||||||||||| ||||||||||||||||||||||||| |||||| |||||    
T  1269916 ttttttgtcaaataacctagtgaggtgtcaagagttcgaacatttaatatatatatattatacaatattctaatcaactgagctaagttcacggaacata 1270015  T
Q  212 tattatatcttttgtcgacagaac 235  Q
    |||||||||||||||| |||||||    
T  1270016 tattatatcttttgtcaacagaac 1270039  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 1270093 - 1270147
Alignment:
Q  292 gcagttacatatggtaatcaacgagtcattgaggctctatcctccagcatctgtg 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1270093 gcagttacatatggtaatcaacgagtcattgaggctctatcctccagcatctgtg 1270147  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 5458093 - 5458133
Alignment:
Q  164 atatattatgcaatattctaatcaactgagctaagctcacg 204  Q
    |||||||||||| | |||| |||||||||||||||||||||    
T  5458093 atatattatgcattgttcttatcaactgagctaagctcacg 5458133  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 22690058 - 22690098
Alignment:
Q  164 atatattatgcaatattctaatcaactgagctaagctcacg 204  Q
    |||||||||||| |||||| | |||||||||||||||||||    
T  22690058 atatattatgcattattcttagcaactgagctaagctcacg 22690098  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 44819515 - 44819555
Alignment:
Q  164 atatattatgcaatattctaatcaactgagctaagctcacg 204  Q
    |||| ||||||| | ||||||||||||||||||||||||||    
T  44819515 atattttatgcattgttctaatcaactgagctaagctcacg 44819555  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 47099057 - 47099099
Alignment:
Q  164 atatattatgcaatattctaatcaactgagctaagctcacggg 206  Q
    |||||||||||| |||||| |||||||||||||||||||||||    
T  47099057 atatattatgcattattcttatcaactgagctaagctcacggg 47099099  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 4332689 - 4332729
Alignment:
Q  164 atatattatgcaatattctaatcaactgagctaagctcacg 204  Q
    |||||||||||| ||||| || |||||||||||||||||||    
T  4332689 atatattatgcattattcaaaccaactgagctaagctcacg 4332729  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 17767 - 17719
Alignment:
Q  161 tatatatattatgcaatattctaatcaactgagctaagctcacgggaca 209  Q
    ||||||||||||||| | | | |||||||||||||||||||||||||||    
T  17767 tatatatattatgcattgtccaaatcaactgagctaagctcacgggaca 17719  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 39974884 - 39974837
Alignment:
Q  163 tatatattatgcaatattctaatcaactgagctaagctcacgggacat 210  Q
    |||| ||||||||||||||  | |||||||||||||||||||||||||    
T  39974884 tataaattatgcaatattcctaccaactgagctaagctcacgggacat 39974837  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 10320535 - 10320493
Alignment:
Q  164 atatattatgcaatattctaatcaactgagctaagctcacggg 206  Q
    |||||||||||| |||||| |||||||||||||| ||||||||    
T  10320535 atatattatgcattattcttatcaactgagctaaactcacggg 10320493  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 42367768 - 42367726
Alignment:
Q  164 atatattatgcaatattctaatcaactgagctaagctcacggg 206  Q
    |||||||||||| | |||| |||||||||||||||||||||||    
T  42367768 atatattatgcattgttcttatcaactgagctaagctcacggg 42367726  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 5728577 - 5728537
Alignment:
Q  164 atatattatgcaatattctaatcaactgagctaagctcacg 204  Q
    |||||||||||| | |||| |||||||||||||||||||||    
T  5728577 atatattatgcattgttctcatcaactgagctaagctcacg 5728537  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 40094920 - 40094884
Alignment:
Q  171 atgcaatattctaatcaactgagctaagctcacggga 207  Q
    ||||||||| || ||||||||||||||||||||||||    
T  40094920 atgcaatatccttatcaactgagctaagctcacggga 40094884  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 11188710 - 11188752
Alignment:
Q  164 atatattatgcaatattctaatcaactgagctaagctcacggg 206  Q
    ||||| ||||||||||||  |||||||||||||||||||||||    
T  11188710 atataatatgcaatattcctatcaactgagctaagctcacggg 11188752  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 15241438 - 15241396
Alignment:
Q  164 atatattatgcaatattctaatcaactgagctaagctcacggg 206  Q
    ||||| ||||||||||||  |||||||||||||||||||||||    
T  15241438 atataatatgcaatattcctatcaactgagctaagctcacggg 15241396  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 36124441 - 36124400
Alignment:
Q  164 atatattatgcaatattctaatcaactgagctaagctcacgg 205  Q
    ||||| ||||||||||||  ||||||||||||||||||||||    
T  36124441 atataatatgcaatattcctatcaactgagctaagctcacgg 36124400  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 36623196 - 36623236
Alignment:
Q  164 atatattatgcaatattctaatcaactgagctaagctcacg 204  Q
    |||||||||||| |||||| |||||||||| ||||||||||    
T  36623196 atatattatgcattattcttatcaactgagttaagctcacg 36623236  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 20296460 - 20296418
Alignment:
Q  164 atatattatgcaatattctaatcaactgagctaagctcacggg 206  Q
    ||||| |||||||||| || |||||||||||||||||||||||    
T  20296460 atataatatgcaatatccttatcaactgagctaagctcacggg 20296418  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 346146 - 346186
Alignment:
Q  164 atatattatgcaatattctaatcaactgagctaagctcacg 204  Q
    |||||||||||| ||||| || |||||||||||||||||||    
T  346146 atatattatgcattattcaaaccaactgagctaagctcacg 346186  T

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Target: scaffold0113 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 37076 - 37117
Alignment:
Q  164 atatattatgcaatattctaatcaactgagctaagctcacgg 205  Q
    ||||| ||||||||||||| |||||||||| |||||||||||    
T  37076 atataatatgcaatattcttatcaactgagttaagctcacgg 37117  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 26763566 - 26763607
Alignment:
Q  165 tatattatgcaatattctaatcaactgagctaagctcacggg 206  Q
    ||||||||||| | |||| |||||||||||||||||||||||    
T  26763566 tatattatgcattgttcttatcaactgagctaagctcacggg 26763607  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 13794530 - 13794570
Alignment:
Q  164 atatattatgcaatattctaatcaactgagctaagctcacg 204  Q
    |||||||||||| ||| || |||||||||||||||||||||    
T  13794530 atatattatgcattatccttatcaactgagctaagctcacg 13794570  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 6975405 - 6975453
Alignment:
Q  292 gcagttacatatggtaatcaacgagtcattgaggctctatcctccagca 340  Q
    |||||| |||||||||||||| || ||| |||| |||||||||||||||    
T  6975405 gcagttgcatatggtaatcaatgaatcaatgagactctatcctccagca 6975453  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 17216151 - 17216191
Alignment:
Q  164 atatattatgcaatattctaatcaactgagctaagctcacg 204  Q
    |||||||||||| |||||| |||||||||||| ||||||||    
T  17216151 atatattatgcattattcttatcaactgagcttagctcacg 17216191  T

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