View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17797_high_18 (Length: 361)
Name: NF17797_high_18
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 2347316 - 2346958
Alignment:
| Q |
1 |
tcacttgtataatggctctgtgcaccatataggtaattccctggactcccctcgtgaccgaacactaatgtcaggatgtattgaaactacaattgtg--- |
97 |
Q |
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| T |
2347316 |
tcacttgtataatggctctgtgcaccatataggtaattccctggacttccctcgtgaccgaagactaatgtctggatgtattgaaactacaattgtgttg |
2347217 |
T |
|
| Q |
98 |
--gaaggtattgaatgttgatatt-gattgataaagaaaccttaccaaacnnnnnnnnctcaaaagtcagaagcagataaatcagtggaagttcatatgt |
194 |
Q |
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| T |
2347216 |
tggaaggtattgaatgttgatatttgattgataaagaaaccttaccaaacaaaaaaa-ctcaaaagtcagaagcagataaatcagtggaagttcatatgt |
2347118 |
T |
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| Q |
195 |
tattgaatattgatattgatagagaaaccataacaaacaaaagtgcctccaatggattaaatttagaaatattttattggaatatgtgtggtcgactctt |
294 |
Q |
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| T |
2347117 |
tattgaatattgatattgatagagaaaccataacaaacaaaagtgcctccaatgaattaaatttagaaatattttattggaatatgtgtggtcgactcct |
2347018 |
T |
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| Q |
295 |
taaaagtataaaaatgttctttccaatataaaattccctctgttagtgatattgtgctac |
354 |
Q |
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| T |
2347017 |
taaaagtataaaaatgttcattccaacataaaattccctctgttagtgatattgtgctac |
2346958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 8286077 - 8286036
Alignment:
| Q |
153 |
ctcaaaagtcagaagcagataaatcagtggaagttcatatgt |
194 |
Q |
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| T |
8286077 |
ctcaaaagtcagaagccaatatatcagtggaagttcatatgt |
8286036 |
T |
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