View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17797_high_22 (Length: 311)

Name: NF17797_high_22
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17797_high_22
NF17797_high_22
[»] chr1 (1 HSPs)
chr1 (18-307)||(52202872-52203161)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 52202872 - 52203161
Alignment:
Q  18 atgatcaccttcaactagtagttcctcgtcgatcgatgttactgatccaaattccagctcttgaaatgctgctcttgtaggaaaagagaaaccaatggtg 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52202872 atgatcaccttcaactagtagttcctcgtcgatcgatgttacagatccaaattccagctcttgaaatgctgctcttgtaggaaaagagaaaccaatggtg 52202971  T
Q  118 gaaagatcaagtgtttgtgtttgagttgattgtggaattggaatccctccatttggaggaaaaaatcctagaggttttggaaaaggtaattgatttgtga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  52202972 gaaagatcaagtgtttgtgtttgagttgattgtggaattggaatccctccatttggaggaaaaaatcctagaggttttggaaaaggtaattgatttgtta 52203071  T
Q  218 ccttagtagtggaaggtttctctgtattaatattaggatgtgtatcattgagcatatgcttcattaaaaatgttattcgatgatgtccat 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  52203072 ccttagtagtggaaggtttctctgtattaatattaggatgtgtatcattgagcatatgcttcattaaaaatgttattctatgatggccat 52203161  T

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