View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17797_high_28 (Length: 263)
Name: NF17797_high_28
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 38674233 - 38674335
Alignment:
| Q |
1 |
gaaaatcatcaaaacgcaaacacccactcacgtttcagaaaaggatttcagtgtgttcttgtgcagatttgaaacagcaatcctagcagccaactgaatc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38674233 |
gaaaatcatcaaaacgcaaacacccactcacgtttcagaaaaggatttcagtgtgttcttgtgcagatttgaaacagcaatcctagcagccaactgaatc |
38674332 |
T |
|
| Q |
101 |
aat |
103 |
Q |
| |
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||| |
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| T |
38674333 |
aat |
38674335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 38674373 - 38674477
Alignment:
| Q |
141 |
ttcatcatcggaacaagataaagttgttaaaacaatagaacctaaaa-aaggcgggaaagtgaaaactgacggatgcataatcggggtggttagcggtca |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38674373 |
ttcatcatcggaacaagataaagttgttaaaacaatagaacctaaaaaaaggcgggaaagtgaaaactgacggatgcataatcggggtggttagcggtca |
38674472 |
T |
|
| Q |
240 |
tgccg |
244 |
Q |
| |
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||||| |
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| T |
38674473 |
tgccg |
38674477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 38669677 - 38669779
Alignment:
| Q |
1 |
gaaaatcatcaaaacgcaaacacccactcacgtttcagaaaaggatttcagtgtgttcttgtgcagatttgaaacagcaatcctagcagccaactgaatc |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38669677 |
gaaaatcatcaaaacacaaacacccactcacgtttcagcaaacgatttcagtgtgttcttgtgcagatttgaaacagcaatcctagcagccaactgaatc |
38669776 |
T |
|
| Q |
101 |
aat |
103 |
Q |
| |
|
||| |
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|
| T |
38669777 |
aat |
38669779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 38669844 - 38669906
Alignment:
| Q |
181 |
cctaaaaaaggcgggaaagtgaaaactgacggatgcataatcggggtggttagcggtcatgcc |
243 |
Q |
| |
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|||||||||||| |||||| |||||||||| || |||||||| ||||| ||||||||| |||| |
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| T |
38669844 |
cctaaaaaaggcaggaaagcgaaaactgacagaagcataatcagggtgattagcggtcttgcc |
38669906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 2061495 - 2061565
Alignment:
| Q |
32 |
gtttcagaaaaggatttcagtgtgttcttgtgcagatttgaaacagcaatcctagcagccaactgaatcaa |
102 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2061495 |
gtttcagaaaaggattccagtgtgttcttgtgcagatttgaaacagcaatcctaccagccaactgaatcaa |
2061565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 243
Target Start/End: Original strand, 2061939 - 2061973
Alignment:
| Q |
209 |
acggatgcataatcggggtggttagcggtcatgcc |
243 |
Q |
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||||||||||||||||||||||||||||||||||| |
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|
| T |
2061939 |
acggatgcataatcggggtggttagcggtcatgcc |
2061973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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