View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17797_high_3 (Length: 604)
Name: NF17797_high_3
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 218 - 597
Target Start/End: Original strand, 25253844 - 25254228
Alignment:
| Q |
218 |
gctattatcaggtatgatagtttgaacaatagaatcagaagaatggacaagaagataatcaacctaaaagggcgactaaggttttaggtgaaagaacgaa |
317 |
Q |
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| T |
25253844 |
gctattatcaggtatgatagtttgaacaatagaatcagaagaatggacaagaagataatcaacctaaaagggagactaaggttttaggtgaaagaacgaa |
25253943 |
T |
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| Q |
318 |
gaggtaataatatcaatttt--gttgt---ttcaagattttattgaaacaaatgccttagactgtaaaaactaaaatcatcagccagaaaatacataaaa |
412 |
Q |
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| T |
25253944 |
gaggtaataatatcaattttctgttgtaatttcaagagtttattgaaacaaatgccttagactgtaaaaactaaaatcatcagccagaaaatacataaaa |
25254043 |
T |
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| Q |
413 |
gaacaacgaaatagtttcaagttgtggttccaaccaaaagtatttttgcttatgcataggtaaagttaactttatcatagaatgaaattcatagacagca |
512 |
Q |
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| T |
25254044 |
gaacaacgaaatagtttcaagttgtggttccaaccaaaagtacttttgcttatgcataggtaaagttaactttatcatagaatgaaattcatagacagca |
25254143 |
T |
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| Q |
513 |
atgtaagacataaaaagaagaaaaaatatatataagaacgaatctaacttcgtcaacaccaaacagcatacttagcaaacaatcc |
597 |
Q |
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| T |
25254144 |
atgtaagacataaaaagaagaaaaagtatatataagaacgaatctaacttcgtccacaccaaacagcatacttagcaaacaatcc |
25254228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 25252664 - 25252874
Alignment:
| Q |
15 |
acctgtgatatatatttgaaaataatttctgttaactttaacaatgtcatttgttgtcaatgttgaagcttgatgaataaatcaagtagaaatatggtta |
114 |
Q |
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| T |
25252664 |
acctgtgatatatatttgaaaataatttctgttaactttaacaatgtcatctgttgtcaatattgaagcttgatgaataaatcaagtagaaatatggtta |
25252763 |
T |
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| Q |
115 |
aaatgtttaatatcagcgagcattcccacatgtagaaatcaacaacatcaaatgttgacaagtaaataaatgtcattatttctagtttatagcaatagat |
214 |
Q |
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| T |
25252764 |
aaatgtttaatatcagctagcattcccacatgtagaaatcaacaacatcaaatgttgacaagtaaataaatgtcatgatttctagtttatagcaatagat |
25252863 |
T |
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| Q |
215 |
tatgctattat |
225 |
Q |
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| T |
25252864 |
tatgctattat |
25252874 |
T |
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