View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17797_high_30 (Length: 258)

Name: NF17797_high_30
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17797_high_30
NF17797_high_30
[»] chr7 (2 HSPs)
chr7 (153-246)||(22323658-22323749)
chr7 (149-246)||(22728756-22728851)
[»] chr5 (1 HSPs)
chr5 (149-221)||(36434637-36434707)
[»] chr1 (4 HSPs)
chr1 (148-231)||(25184544-25184625)
chr1 (149-235)||(42605980-42606064)
chr1 (148-242)||(52164611-52164704)
chr1 (149-204)||(22964007-22964062)
[»] chr6 (2 HSPs)
chr6 (187-246)||(31554450-31554507)
chr6 (148-183)||(31538599-31538634)
[»] chr3 (1 HSPs)
chr3 (149-195)||(47402567-47402613)
[»] chr2 (1 HSPs)
chr2 (149-195)||(43114263-43114309)
[»] chr4 (1 HSPs)
chr4 (148-204)||(4883599-4883655)


Alignment Details
Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 153 - 246
Target Start/End: Complemental strand, 22323749 - 22323658
Alignment:
Q  153 tacttactaaagcttgtatggtcaagctaaccctaaccctaaatctaacctagcaataattccctcccattctaacgcatttaattcacaggtt 246  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  22323749 tacttactaaagcttgtttggtcaagctaaccctaaccctaaatctaacctagcaat--ttccctcccattctaacgcatttaattcacaggtt 22323658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 149 - 246
Target Start/End: Original strand, 22728756 - 22728851
Alignment:
Q  149 atcttacttactaaagcttgtatggtcaagctaaccctaaccctaaatctaacctagcaataattccctcccattctaacgcatttaattcacaggtt 246  Q
    |||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||  |  | ||||||||||||||||||||||||||||||    
T  22728756 atcttacttattaaagtttgtctggtcaagctaaccctaaccctaaatctaacctagcaat--tcacttcccattctaacgcatttaattcacaggtt 22728851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 36434707 - 36434637
Alignment:
Q  149 atcttacttactaaagcttgtatggtcaagctaaccctaaccctaaatctaacctagcaataattccctccca 221  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  36434707 atcttacttactaaagtttgtctggtcaagctaaccctaaccctaaatctaacctagcaat--ttccctccca 36434637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 231
Target Start/End: Original strand, 25184544 - 25184625
Alignment:
Q  148 tatcttacttactaaagcttgtatggtcaagctaaccctaaccctaaatctaacctagcaataattccctcccattctaacgca 231  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||| |  ||||||| ||||||||||||    
T  25184544 tatcttacttattaaagcttgtctggtcaagctaaccctaaccctaaatttaacctagcact--ttccctctcattctaacgca 25184625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 42606064 - 42605980
Alignment:
Q  149 atcttacttactaaagcttgtatggtcaagctaaccctaaccctaaatctaacctagcaataattccctcccattctaacgcattta 235  Q
    |||||||||| ||||||||||  ||||||||||||||||||||||||  |||||||||| |  ||||| | |||||||| |||||||    
T  42606064 atcttacttattaaagcttgtcaggtcaagctaaccctaaccctaaaattaacctagcatt--ttcccgctcattctaaagcattta 42605980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 242
Target Start/End: Original strand, 52164611 - 52164704
Alignment:
Q  148 tatcttacttactaaagcttgtatggtcaagctaaccctaaccctaaatc-taacctagcaataattccctcccattctaacgcatttaattcaca 242  Q
    |||||| ||| ||||||||||| ||||||||| | ||||||||| || || |||||||||  |  ||||||||||||| |||||| ||||||||||    
T  52164611 tatctttctttctaaagcttgtctggtcaagcaatccctaaccccaattcataacctagc--tttttccctcccattccaacgcaattaattcaca 52164704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 22964007 - 22964062
Alignment:
Q  149 atcttacttactaaagcttgtatggtcaagctaaccctaaccctaaatctaaccta 204  Q
    ||||||||||||||||||||| |||||||||||    ||||||||| |||||||||    
T  22964007 atcttacttactaaagcttgtctggtcaagctattggtaaccctaattctaaccta 22964062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 31554450 - 31554507
Alignment:
Q  187 aaccctaaatctaacctagcaataattccctcccattctaacgcatttaattcacaggtt 246  Q
    |||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||    
T  31554450 aaccctaaatctaacctagcaat--ttccatcccattctaacgcatttaattcacaggtt 31554507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 183
Target Start/End: Original strand, 31538599 - 31538634
Alignment:
Q  148 tatcttacttactaaagcttgtatggtcaagctaac 183  Q
    |||||||||||||||||||||| |||||||||||||    
T  31538599 tatcttacttactaaagcttgtctggtcaagctaac 31538634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 47402613 - 47402567
Alignment:
Q  149 atcttacttactaaagcttgtatggtcaagctaaccctaaccctaaa 195  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||    
T  47402613 atcttacttactaaagcttgtcaggtcaagctaaccctaaccctaaa 47402567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 43114309 - 43114263
Alignment:
Q  149 atcttacttactaaagcttgtatggtcaagctaaccctaaccctaaa 195  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||    
T  43114309 atcttacttactaaagcttgtcaggtcaagctaaccctaaccctaaa 43114263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 4883655 - 4883599
Alignment:
Q  148 tatcttacttactaaagcttgtatggtcaagctaaccctaaccctaaatctaaccta 204  Q
    ||||||||||||||||||||||  ||||||||||  |||||||||||| ||||||||    
T  4883655 tatcttacttactaaagcttgttaggtcaagctattcctaaccctaaaactaaccta 4883599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University