View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17797_high_36 (Length: 238)

Name: NF17797_high_36
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17797_high_36
NF17797_high_36
[»] chr1 (30 HSPs)
chr1 (1-211)||(32182131-32182341)
chr1 (5-69)||(44940342-44940406)
chr1 (5-69)||(23902071-23902136)
chr1 (6-50)||(27145741-27145785)
chr1 (8-69)||(34290237-34290299)
chr1 (5-69)||(39347971-39348036)
chr1 (18-70)||(5047146-5047198)
chr1 (10-69)||(26779934-26779994)
chr1 (18-65)||(12564517-12564564)
chr1 (18-69)||(37842373-37842424)
chr1 (7-45)||(48748321-48748360)
chr1 (8-69)||(7137005-7137067)
chr1 (18-68)||(43332486-43332536)
chr1 (5-61)||(14629970-14630027)
chr1 (5-69)||(25479582-25479647)
chr1 (16-69)||(28083306-28083359)
chr1 (16-57)||(28935892-28935933)
chr1 (5-69)||(31517744-31517809)
chr1 (16-65)||(32548647-32548696)
chr1 (10-70)||(47598430-47598491)
chr1 (6-69)||(219556-219620)
chr1 (16-64)||(5150943-5150991)
chr1 (151-191)||(7120079-7120119)
chr1 (10-69)||(11893602-11893661)
chr1 (10-69)||(16322850-16322910)
chr1 (4-63)||(28077072-28077132)
chr1 (5-68)||(30257685-30257749)
chr1 (5-60)||(37593688-37593744)
chr1 (18-50)||(44032017-44032049)
chr1 (18-54)||(44936621-44936657)
[»] chr7 (15 HSPs)
chr7 (18-69)||(44151498-44151549)
chr7 (18-69)||(44241860-44241911)
chr7 (5-69)||(2825235-2825300)
chr7 (5-69)||(24363605-24363670)
chr7 (18-70)||(12792581-12792633)
chr7 (18-61)||(12792642-12792685)
chr7 (18-69)||(20881654-20881705)
chr7 (25-76)||(40439048-40439099)
chr7 (5-63)||(9050642-9050700)
chr7 (19-69)||(39345472-39345522)
chr7 (22-68)||(48917368-48917414)
chr7 (5-69)||(4966157-4966222)
chr7 (18-51)||(5017958-5017991)
chr7 (20-69)||(39334194-39334243)
chr7 (21-61)||(12792519-12792559)
[»] chr2 (16 HSPs)
chr2 (18-69)||(43985021-43985072)
chr2 (20-69)||(44644279-44644328)
chr2 (8-69)||(16867740-16867802)
chr2 (6-63)||(35379021-35379079)
chr2 (5-70)||(43911003-43911069)
chr2 (151-204)||(28933740-28933793)
chr2 (5-69)||(29316779-29316844)
chr2 (18-69)||(6988116-6988167)
chr2 (18-69)||(7871644-7871695)
chr2 (16-66)||(1810668-1810718)
chr2 (20-69)||(1742052-1742101)
chr2 (5-69)||(35485918-35485983)
chr2 (18-63)||(36852479-36852524)
chr2 (5-69)||(2410050-2410114)
chr2 (6-69)||(9174816-9174880)
chr2 (18-50)||(43259854-43259886)
[»] chr8 (14 HSPs)
chr8 (18-67)||(4762512-4762561)
chr8 (6-69)||(9956819-9956883)
chr8 (18-69)||(7918791-7918842)
chr8 (22-64)||(33553246-33553288)
chr8 (5-61)||(42215086-42215143)
chr8 (18-82)||(27028819-27028883)
chr8 (5-68)||(38421266-38421330)
chr8 (18-69)||(39561559-39561610)
chr8 (19-61)||(11494155-11494197)
chr8 (16-69)||(1640367-1640420)
chr8 (5-69)||(28769343-28769408)
chr8 (8-48)||(30918135-30918176)
chr8 (7-42)||(8060697-8060733)
chr8 (6-45)||(11000581-11000621)
[»] chr4 (24 HSPs)
chr4 (5-69)||(29263371-29263436)
chr4 (10-69)||(49219140-49219200)
chr4 (18-69)||(47800624-47800675)
chr4 (21-69)||(8422860-8422908)
chr4 (151-191)||(32066510-32066550)
chr4 (5-69)||(42121489-42121553)
chr4 (5-65)||(52735127-52735187)
chr4 (18-69)||(11158375-11158426)
chr4 (5-63)||(23819096-23819155)
chr4 (5-63)||(53673662-53673721)
chr4 (8-69)||(17822872-17822934)
chr4 (5-66)||(17884072-17884134)
chr4 (4-65)||(35405952-35406014)
chr4 (16-69)||(2996574-2996627)
chr4 (18-67)||(4798584-4798633)
chr4 (5-69)||(7694014-7694079)
chr4 (18-51)||(14011253-14011286)
chr4 (18-63)||(18628561-18628606)
chr4 (8-45)||(20105438-20105475)
chr4 (23-68)||(29778797-29778842)
chr4 (5-61)||(47145971-47146028)
chr4 (5-56)||(5131254-5131306)
chr4 (21-61)||(36048542-36048582)
chr4 (5-40)||(43824313-43824349)
[»] chr5 (15 HSPs)
chr5 (18-69)||(17368677-17368728)
chr5 (8-69)||(33533546-33533608)
chr5 (5-69)||(17258887-17258952)
chr5 (5-64)||(37611219-37611279)
chr5 (5-64)||(37787949-37788009)
chr5 (5-51)||(12521547-12521594)
chr5 (18-64)||(12242728-12242774)
chr5 (10-63)||(18906349-18906403)
chr5 (5-42)||(36638775-36638813)
chr5 (18-68)||(40205092-40205142)
chr5 (5-69)||(1084125-1084190)
chr5 (16-69)||(5284464-5284517)
chr5 (5-69)||(11707056-11707121)
chr5 (6-69)||(4014429-4014493)
chr5 (3-50)||(28413286-28413334)
[»] chr6 (13 HSPs)
chr6 (26-68)||(13907849-13907891)
chr6 (18-76)||(26694872-26694930)
chr6 (5-45)||(6536972-6537013)
chr6 (20-64)||(2205610-2205654)
chr6 (5-68)||(4420645-4420709)
chr6 (18-69)||(25100044-25100095)
chr6 (151-202)||(31461596-31461647)
chr6 (23-69)||(31812036-31812082)
chr6 (18-66)||(5564146-5564194)
chr6 (5-64)||(7931730-7931790)
chr6 (11-67)||(29837095-29837151)
chr6 (10-38)||(33787997-33788025)
chr6 (16-76)||(34430477-34430537)
[»] chr3 (9 HSPs)
chr3 (5-69)||(36887505-36887570)
chr3 (18-69)||(21367668-21367719)
chr3 (18-60)||(482810-482852)
chr3 (5-42)||(45432943-45432981)
chr3 (18-67)||(27792875-27792924)
chr3 (10-69)||(33965497-33965558)
chr3 (18-51)||(36139897-36139930)
chr3 (5-69)||(52619004-52619069)
chr3 (21-69)||(47904084-47904132)


Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 32182341 - 32182131
Alignment:
Q  1 atgaatgttcataagtttttt-cagcttatttccataagctcttcaagatagattttgaaaacaacttatgacatattcacaagnnnnnnnnnnnaactt 99  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||           |||||    
T  32182341 atgaatgttcataagtttttttcagcttatttccttaagctcttcaagatagattttgaaaacaacttatgacatattcacaagtttttttttt-aactt 32182243  T
Q  100 attttaataaggtctccataatataacttatgaaaacaacttattacttacatcttttgttatataagtagtttatacatatgcacttatacagtaagtg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32182242 attttaataaggtctccataatataacttatgaaaacaacttattacttacatcttttgttatataagtagtttatacatatgcacttatacagtaagtg 32182143  T
Q  200 cttgtactacta 211  Q
    ||||||||||||    
T  32182142 cttgtactacta 32182131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 44940406 - 44940342
Alignment:
Q  5 atgttcataagttttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||| ||||||||||||||||||||||||| || ||||||| |||||||| ||||||||||||||    
T  44940406 atgtccataagttttttcagcttatttccacaacctcttcaggatagattatgaaaacaacttat 44940342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 23902071 - 23902136
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||| |||||||| ||||||||||| |||||||||||||  ||||||| |||||||||||||||||    
T  23902071 atgtgcataagttgttttcagcttacttccataagctctctaagatagcttttgaaaacaacttat 23902136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 27145741 - 27145785
Alignment:
Q  6 tgttcataagttttttcagcttatttccataagctcttcaagata 50  Q
    |||||||||||||||||||||||||| |||||| |||||||||||    
T  27145741 tgttcataagttttttcagcttattttcataagttcttcaagata 27145785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 34290299 - 34290237
Alignment:
Q  8 ttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||||| |||||||||||||| |||||| |||||||||||| || |||||||| |||||    
T  34290299 ttcataagttgttttcagcttattttcataagttcttcaagatagcttatgaaaacagcttat 34290237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 39347971 - 39348036
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||| |||||||| ||||||||||||||||||||||| | || ||||| || ||||||||||||||    
T  39347971 atgtccataagttgttttcagcttatttccataagctttgcaggatagtttatgaaaacaacttat 39348036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 5047198 - 5047146
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttatg 70  Q
    |||||||||||||||||||||||||||| ||||| || |||||| | ||||||    
T  5047198 ttttcagcttatttccataagctcttcatgatagcttatgaaaaaagcttatg 5047146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 26779934 - 26779994
Alignment:
Q  10 cataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||| |||||| ||||||| |||||| |||||||||||| || ||||||||||||||    
T  26779934 cataagttgttttcaacttattttcataagttcttcaagatagcttatgaaaacaacttat 26779994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 12564517 - 12564564
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaac 65  Q
    ||||||||||||||||||||| ||| |||||||| || ||||||||||    
T  12564517 ttttcagcttatttccataagttctccaagatagcttatgaaaacaac 12564564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 37842373 - 37842424
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    ||||||||||||||  ||||| |||||||||||| || ||||||||||||||    
T  37842373 ttttcagcttatttttataagttcttcaagatagcttatgaaaacaacttat 37842424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 48748321 - 48748360
Alignment:
Q  7 gttcataagtt-ttttcagcttatttccataagctcttca 45  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  48748321 gttcataagttgttttcagcttatttccataagctcttca 48748360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 7137005 - 7137067
Alignment:
Q  8 ttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||||| |||||||||||||| |||||| ||| |||||||| || |||||||| |||||    
T  7137005 ttcataagttattttcagcttattttcataagttctccaagatagcttatgaaaacagcttat 7137067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 43332536 - 43332486
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaactta 68  Q
    ||||||||||||||  |||||||||||||||||| || |||||||| ||||    
T  43332536 ttttcagcttattttaataagctcttcaagatagcttatgaaaacagctta 43332486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 14629970 - 14630027
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaa 61  Q
    ||||||||||||| ||||||||||||||||||||  ||| |||||||| || ||||||    
T  14629970 atgttcataagttgttttcagcttatttccataaagtctccaagatagcttatgaaaa 14630027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 25479647 - 25479582
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||| |||| |||||||||||||| ||||||||||  | ||||| || ||||||||||||||    
T  25479647 atgttcattagttgttttcagcttattttcataagctctctaggatagcttatgaaaacaacttat 25479582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 28083306 - 28083359
Alignment:
Q  16 ttttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||||||||||| ||||||||||| | |||||||| ||| || |||||||    
T  28083306 ttttttcagcttattttcataagctctttaggatagattatgataataacttat 28083359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 28935892 - 28935933
Alignment:
Q  16 ttttttcagcttatttccataagctcttcaagatagattttg 57  Q
    |||||| ||||||||||||||||||||||| ||||| |||||    
T  28935892 tttttttagcttatttccataagctcttcaggatagcttttg 28935933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 31517744 - 31517809
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    ||||||||||| | |||||||||||||| |||||||||| ||||| ||||| |||| ||| |||||    
T  31517744 atgttcataagctgttttcagcttattttcataagctctccaagacagattatgaagacagcttat 31517809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 32548647 - 32548696
Alignment:
Q  16 ttttttcagcttatttccataagctcttcaagatagattttgaaaacaac 65  Q
    |||||||| |||||||||||||||||  |||||||| || ||||||||||    
T  32548647 ttttttcaacttatttccataagctccccaagatagcttatgaaaacaac 32548696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 47598430 - 47598491
Alignment:
Q  10 cataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttatg 70  Q
    |||||||| |||||||||| || ||||||||||| || ||||| || |||||||||||||||    
T  47598430 cataagttgttttcagcttgttgccataagctctccaggatagcttatgaaaacaacttatg 47598491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 219556 - 219620
Alignment:
Q  6 tgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||||| | ||||||||| |||||||||||||||||| || || || || |||||||||||    
T  219556 tgttcataagctgttttcagctcatttccataagctcttcaggacagcttatgtaaacaacttat 219620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 5150991 - 5150943
Alignment:
Q  16 ttttttcagcttatttccataagctcttcaagatagattttgaaaacaa 64  Q
    |||||||| |||||||| |||||||||||| ||||| || |||||||||    
T  5150991 ttttttcaacttatttctataagctcttcatgatagcttatgaaaacaa 5150943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 7120119 - 7120079
Alignment:
Q  151 atcttttgttatataagtagtttatacatatgcacttatac 191  Q
    |||||||||||||||| ||||||||| ||| ||||||||||    
T  7120119 atcttttgttatataaatagtttatatataagcacttatac 7120079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 11893602 - 11893661
Alignment:
Q  10 cataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||| |||||||||||||||||||| |||||||| |||| || || |||||||||||    
T  11893602 cataagttgttttcagcttatttccataaactcttcaaaatagcttatg-aaacaacttat 11893661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 16322910 - 16322850
Alignment:
Q  10 cataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||| |||| |||||||||||||||||||||||| ||||  | |||||||| |||||    
T  16322910 cataagttgtttttagcttatttccataagctcttcaaaatagcctatgaaaacagcttat 16322850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 28077072 - 28077132
Alignment:
Q  4 aatgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaaca 63  Q
    |||||||||||||| ||||||||||||||| |||||||||  || |||| || ||||||||    
T  28077072 aatgttcataagttgttttcagcttatttcaataagctctctaaaatagcttatgaaaaca 28077132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 30257749 - 30257685
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaactta 68  Q
    ||||||||||| | ||||||||||||||| |||||| || || ||||| || |||||||||||||    
T  30257749 atgttcataagctgttttcagcttatttctataagccctccaggatagtttatgaaaacaactta 30257685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 37593688 - 37593744
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaa 60  Q
    ||||||||||| | |||||||||||||| |||||||||||||| |||| || |||||    
T  37593688 atgttcataagctgttttcagcttattttcataagctcttcaaaatagcttatgaaa 37593744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 44032017 - 44032049
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagata 50  Q
    ||||||||| |||||||||||||||||||||||    
T  44032017 ttttcagctaatttccataagctcttcaagata 44032049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 44936621 - 44936657
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagatt 54  Q
    ||||| || ||||||||||||||||||||||||||||    
T  44936621 ttttctgcctatttccataagctcttcaagatagatt 44936657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 44151498 - 44151549
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    ||||||||||||||||||||||| |||||||||| || ||||||||||||||    
T  44151498 ttttcagcttatttccataagcttttcaagatagtttatgaaaacaacttat 44151549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 44241911 - 44241860
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    ||||||||||||||| ||||||| |||||||||| || ||||||||||||||    
T  44241911 ttttcagcttatttctataagctattcaagatagcttatgaaaacaacttat 44241860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 2825235 - 2825300
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    ||||||||||||| ||||||||||||||||||||| |||  | ||||| || ||||||||||||||    
T  2825235 atgttcataagttattttcagcttatttccataagttctctaggatagcttgtgaaaacaacttat 2825300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 24363605 - 24363670
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||| |||||||| |||||||||||||||||||| |||| || ||||| || ||||||||||||||    
T  24363605 atgtccataagttgttttcagcttatttccataacctctccaggatagcttatgaaaacaacttat 24363670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 12792581 - 12792633
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttatg 70  Q
    |||||||||||||| ||||||||||||||||||| || |||||| | ||||||    
T  12792581 ttttcagcttattttcataagctcttcaagatagcttatgaaaatagcttatg 12792633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 12792642 - 12792685
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaa 61  Q
    ||||||||||||||||||| |||||||||||||| || ||||||    
T  12792642 ttttcagcttatttccatatgctcttcaagatagcttatgaaaa 12792685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 20881654 - 20881705
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||||||||| |||||| |||| ||||||| || ||||||||||||||    
T  20881654 ttttcagcttattttcataagttctttaagatagtttatgaaaacaacttat 20881705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 40439099 - 40439048
Alignment:
Q  25 cttatttccataagctcttcaagatagattttgaaaacaacttatgacatat 76  Q
    ||||||||||||||||||||| ||||| |  |||||||||||||| ||||||    
T  40439099 cttatttccataagctcttcaggatagctaatgaaaacaacttataacatat 40439048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 9050700 - 9050642
Alignment:
Q  5 atgttcataagttttttcagcttatttccataagctcttcaagatagattttgaaaaca 63  Q
    |||||||||| |||||||||||||||| || ||| ||| |||||||| || ||||||||    
T  9050700 atgttcataatttttttcagcttattttcacaagttctccaagatagtttatgaaaaca 9050642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 39345522 - 39345472
Alignment:
Q  19 tttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||||||||||||||| || ||| ||||| ||||||||||| |||||    
T  39345522 tttcagcttatttccataaggtcgtcaggatagcttttgaaaacagcttat 39345472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 48917368 - 48917414
Alignment:
Q  22 cagcttatttccataagctcttcaagatagattttgaaaacaactta 68  Q
    |||||||||| |||||||||| |||||||| || |||||||||||||    
T  48917368 cagcttattttcataagctctccaagatagcttatgaaaacaactta 48917414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 4966222 - 4966157
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||| |||||||| ||||||| |||||||||||||||||||| ||| | || |||||||| |||||    
T  4966222 atgtccataagttgttttcagtttatttccataagctcttcaggatggcttatgaaaacagcttat 4966157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 5017958 - 5017991
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatag 51  Q
    ||||||||||||||||||||||| ||||||||||    
T  5017958 ttttcagcttatttccataagcttttcaagatag 5017991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 39334243 - 39334194
Alignment:
Q  20 ttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    ||||||||||||||||||||||  || ||||| ||||||||||| |||||    
T  39334243 ttcagcttatttccataagctcgccaggatagcttttgaaaacagcttat 39334194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 12792519 - 12792559
Alignment:
Q  21 tcagcttatttccataagctcttcaagatagattttgaaaa 61  Q
    |||||||||||| |||||||||||||||||| || ||||||    
T  12792519 tcagcttatttcaataagctcttcaagatagcttatgaaaa 12792559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 43985021 - 43985072
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||||||||| ||||||||||||||||||| || ||||||||||||||    
T  43985021 ttttcagcttattttcataagctcttcaagatagcttatgaaaacaacttat 43985072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 44644328 - 44644279
Alignment:
Q  20 ttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||||||| ||||||||||||||||||| ||||||||||| |||||    
T  44644328 ttcagcttattttcataagctcttcaagatagtttttgaaaacagcttat 44644279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 16867802 - 16867740
Alignment:
Q  8 ttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||||| |||||| |||||||||||||||||| |||||||| || |||||||| |||||    
T  16867802 ttcataagttgttttcaacttatttccataagctctccaagatagcttgtgaaaacaccttat 16867740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 35379021 - 35379079
Alignment:
Q  6 tgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaaca 63  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||| || ||||||||    
T  35379021 tgttcataagttgttttcagcttattttcataagctctccaagatagcttatgaaaaca 35379079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 43911003 - 43911069
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttatg 70  Q
    ||||||||||||| |||||||||||||  || ||||| | |||||||| ||||||||||||||||||    
T  43911003 atgttcataagttgttttcagcttattatcacaagctttccaagatagcttttgaaaacaacttatg 43911069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 28933793 - 28933740
Alignment:
Q  151 atcttttgttatataagtagtttatacatatgcacttatacagtaagtgcttgt 204  Q
    |||||||||||||||| ||| ||||||||  ||||||||| |||||||||||||    
T  28933793 atcttttgttatataaatagcttatacatgagcacttatatagtaagtgcttgt 28933740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 29316779 - 29316844
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    ||||||||||||| ||||||||||||||||||||| ||| |||||||| |  |||||||| |||||    
T  29316779 atgttcataagttcttttcagcttatttccataagttctccaagatagctgatgaaaacagcttat 29316844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 6988167 - 6988116
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||| |||||||| |||| ||||||||||||| || ||||||||||||||    
T  6988167 ttttcatcttatttctataaactcttcaagatagcttatgaaaacaacttat 6988116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 7871695 - 7871644
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    ||||||||||||||||||||||||||||| | || || |||||||| |||||    
T  7871695 ttttcagcttatttccataagctcttcaaaagagcttatgaaaacagcttat 7871644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 1810718 - 1810668
Alignment:
Q  16 ttttttcagcttatttccataagctcttcaagatagattttgaaaacaact 66  Q
    |||||||||||||||| ||||| ||||||||||||| || | |||||||||    
T  1810718 ttttttcagcttattttcataaactcttcaagatagcttataaaaacaact 1810668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 1742052 - 1742101
Alignment:
Q  20 ttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||| ||||||||||||| ||||||| |||||||| |||||||| |||||    
T  1742052 ttcaacttatttccataaactcttcatgatagattatgaaaacagcttat 1742101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 35485983 - 35485918
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    ||||||||||| | ||||||||| ||||||||| |||||||| ||||| || | ||||||||||||    
T  35485983 atgttcataagctgttttcagctcatttccataggctcttcaggatagcttataaaaacaacttat 35485918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 36852524 - 36852479
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaaca 63  Q
    ||||||| ||||||||||||||||| |||||||| || ||||||||    
T  36852524 ttttcagattatttccataagctctccaagatagcttatgaaaaca 36852479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 2410050 - 2410114
Alignment:
Q  5 atgttcataagttttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||||  | ||||||||||||||||||||||||| || |||| | | || |||||||||||    
T  2410050 atgttcatagctattttcagcttatttccataagctctacaggataaaatatgcaaacaacttat 2410114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 9174880 - 9174816
Alignment:
Q  6 tgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||||| | |||||||||||||| ||||||||||  ||||||| || |||||||| |||||    
T  9174880 tgttcataagctattttcagcttattttcataagctctgtaagatagcttatgaaaacagcttat 9174816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 43259886 - 43259854
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagata 50  Q
    |||| ||||||||||||||||||||||||||||    
T  43259886 tttttagcttatttccataagctcttcaagata 43259854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 4762561 - 4762512
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaactt 67  Q
    |||||||||||||| ||||||||||||||||||| || ||||||||||||    
T  4762561 ttttcagcttatttacataagctcttcaagatagcttatgaaaacaactt 4762512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 9956819 - 9956883
Alignment:
Q  6 tgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||||||  |||||||||||||| |||||| ||| ||||||||||| ||||||||||||||    
T  9956819 tgttcataagtagttttcagcttattttcataagttctccaagatagattatgaaaacaacttat 9956883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 7918791 - 7918842
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    ||||||||||||||||| ||||||| |||||||| || ||||||||||||||    
T  7918791 ttttcagcttatttccacaagctctacaagatagcttatgaaaacaacttat 7918842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 33553288 - 33553246
Alignment:
Q  22 cagcttatttccataagctcttcaagatagattttgaaaacaa 64  Q
    |||||||||||||||||||||||||||||| || |||||||||    
T  33553288 cagcttatttccataagctcttcaagatagcttatgaaaacaa 33553246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 42215086 - 42215143
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaa 61  Q
    ||||||||||||| |||||||||||||| |||||||||| |||||||| || ||||||    
T  42215086 atgttcataagttgttttcagcttatttacataagctctccaagatagcttatgaaaa 42215143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 27028883 - 27028819
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttatgacatattcacaa 82  Q
    |||||||||||||| |||||||||| |||||||| || |||||||| |||||  ||||| |||||    
T  27028883 ttttcagcttattttcataagctctccaagatagcttatgaaaacagcttatagcatatacacaa 27028819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 38421330 - 38421266
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaactta 68  Q
    |||| |||||||| ||||||||||| || || ||| |||||||||||| ||||||||||||||||    
T  38421330 atgtccataagttgttttcagcttacttacacaagatcttcaagatagcttttgaaaacaactta 38421266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 39561559 - 39561610
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    ||||||||||||||||||||||| |||| ||||| ||  |||||||||||||    
T  39561559 ttttcagcttatttccataagcttttcatgatagcttacgaaaacaacttat 39561610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 11494197 - 11494155
Alignment:
Q  19 tttcagcttatttccataagctcttcaagatagattttgaaaa 61  Q
    ||||||||||||| ||||||||||||||||||| || ||||||    
T  11494197 tttcagcttattttcataagctcttcaagatagcttatgaaaa 11494155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 1640367 - 1640420
Alignment:
Q  16 ttttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    ||||| |||||||||||||||||||||| || |||| || |||||||| |||||    
T  1640367 tttttccagcttatttccataagctcttaaatatagcttatgaaaacagcttat 1640420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 28769343 - 28769408
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||| |||||||| |||||||||||||||||||| |||| ||| |||| || |||||||| |||||    
T  28769343 atgtccataagttgttttcagcttatttccataaactctccaaaatagcttatgaaaacagcttat 28769408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 30918176 - 30918135
Alignment:
Q  8 ttcataagtt-ttttcagcttatttccataagctcttcaaga 48  Q
    |||||||||| ||||||||||||||||||||||||| |||||    
T  30918176 ttcataagttgttttcagcttatttccataagctctccaaga 30918135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 8060733 - 8060697
Alignment:
Q  7 gttcataagtt-ttttcagcttatttccataagctct 42  Q
    ||||||||||| |||||||||||||||||||||||||    
T  8060733 gttcataagttattttcagcttatttccataagctct 8060697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 11000581 - 11000621
Alignment:
Q  6 tgttcataagtttt-ttcagcttatttccataagctcttca 45  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  11000581 tgttcataagttgtcttcagcttatttccataagctcttca 11000621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 29263436 - 29263371
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    ||||||||||||| ||||||||||||||||| ||||||| || ||||| || ||||||||||||||    
T  29263436 atgttcataagttgttttcagcttatttccacaagctctgcaggatagcttatgaaaacaacttat 29263371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 49219200 - 49219140
Alignment:
Q  10 cataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||| |||||||||||||||||||| ||||| ||||||| || ||||||||||||||    
T  49219200 cataagttgttttcagcttatttccataatctctttaagatagtttatgaaaacaacttat 49219140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 47800675 - 47800624
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||||||||| ||||||||||||||||||| || |||||||| |||||    
T  47800675 ttttcagcttattttcataagctcttcaagatagcttatgaaaacagcttat 47800624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 8422860 - 8422908
Alignment:
Q  21 tcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    ||||||||||| ||||| |||| ||||||||||| ||||||||||||||    
T  8422860 tcagcttatttgcataaactctccaagatagattgtgaaaacaacttat 8422908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 32066510 - 32066550
Alignment:
Q  151 atcttttgttatataagtagtttatacatatgcacttatac 191  Q
    ||||||||||||| |||||||||||||||| ||||||||||    
T  32066510 atcttttgttataaaagtagtttatacataagcacttatac 32066550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 42121553 - 42121489
Alignment:
Q  5 atgttcataagttttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    ||||||||||| | |||||||||||||||| ||| ||| |||||||| |  ||||||||||||||    
T  42121553 atgttcataagctgtttcagcttatttccacaagttctccaagatagctcatgaaaacaacttat 42121489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 52735187 - 52735127
Alignment:
Q  5 atgttcataagttttttcagcttatttccataagctcttcaagatagattttgaaaacaac 65  Q
    |||| |||| ||| ||| ||||||||||||||||||||||||||||| ||  |||||||||    
T  52735187 atgtccatatgttattttagcttatttccataagctcttcaagatagcttacgaaaacaac 52735127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 11158375 - 11158426
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    ||||||||||||||||| |||||||  ||||||| || ||||||||||||||    
T  11158375 ttttcagcttatttccacaagctctctaagatagcttatgaaaacaacttat 11158426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 23819155 - 23819096
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaaca 63  Q
    |||| |||||||| |||||| |||||||| |||||||||||||||||| || ||||||||    
T  23819155 atgtccataagttgttttcatcttatttctataagctcttcaagatagcttatgaaaaca 23819096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 53673662 - 53673721
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaaca 63  Q
    |||| |||||||| |||||||||||||| |||||||||| |||||||| || ||||||||    
T  53673662 atgtccataagttgttttcagcttatttacataagctctccaagatagcttatgaaaaca 53673721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 17822872 - 17822934
Alignment:
Q  8 ttcataag-ttttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||| |||||| ||||||||| |||||| ||| |||||||| || ||||||||||||||    
T  17822872 ttcataagctttttttagcttattttcataagttctccaagatagcttatgaaaacaacttat 17822934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 17884134 - 17884072
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaact 66  Q
    ||||||||||||| ||||||||| |||| |||||||||| ||| |||| || |||||||||||    
T  17884134 atgttcataagttgttttcagctaattttcataagctctccaatatagcttatgaaaacaact 17884072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 35406014 - 35405952
Alignment:
Q  4 aatgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaac 65  Q
    |||||||||||| | ||||||||||| ||||||||||||| || ||||  |||||||||||||    
T  35406014 aatgttcataagctgttttcagcttacttccataagctctccaggataacttttgaaaacaac 35405952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 2996627 - 2996574
Alignment:
Q  16 ttttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||| ||||||| |||| ||||| |||||||| || ||||||||||||||    
T  2996627 ttttttcaacttattttcatacgctctccaagatagcttatgaaaacaacttat 2996574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 4798584 - 4798633
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaactt 67  Q
    |||| ||||||||| |||||||||| |||||||| || ||||||||||||    
T  4798584 ttttgagcttatttgcataagctctccaagatagcttatgaaaacaactt 4798633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 7694014 - 7694079
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    ||||||||||||| |||||||||||||||||||| |||| || ||||  || |||||||| |||||    
T  7694014 atgttcataagttgttttcagcttatttccataaactctccaggataacttatgaaaacagcttat 7694079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 14011286 - 14011253
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatag 51  Q
    ||||||||||||||||||||||||| ||||||||    
T  14011286 ttttcagcttatttccataagctctccaagatag 14011253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 18628561 - 18628606
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaaca 63  Q
    ||||||||||||||||||||||||| |||||||  || ||||||||    
T  18628561 ttttcagcttatttccataagctctccaagataacttatgaaaaca 18628606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 20105438 - 20105475
Alignment:
Q  8 ttcataagttttttcagcttatttccataagctcttca 45  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  20105438 ttcataagctttttcagcttatttacataagctcttca 20105475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 29778842 - 29778797
Alignment:
Q  23 agcttatttccataagctcttcaagatagattttgaaaacaactta 68  Q
    ||||||||| ||||||||||||||| ||| || |||||||||||||    
T  29778842 agcttattttcataagctcttcaaggtagcttatgaaaacaactta 29778797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 47146028 - 47145971
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaa 61  Q
    ||||||||||||| |||||| ||||||| |||||||||||||||| || || ||||||    
T  47146028 atgttcataagttgttttcaccttattttcataagctcttcaagacagtttatgaaaa 47145971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 5131254 - 5131306
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagatttt 56  Q
    |||| |||||||| ||||||||||||||||||||||||| || ||||| ||||    
T  5131254 atgtccataagttgttttcagcttatttccataagctctccaggatagctttt 5131306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 36048582 - 36048542
Alignment:
Q  21 tcagcttatttccataagctcttcaagatagattttgaaaa 61  Q
    ||||||||||||||||||||||  ||||||| |||||||||    
T  36048582 tcagcttatttccataagctctctaagatagcttttgaaaa 36048542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 43824349 - 43824313
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagct 40  Q
    ||||||||||||| |||||||||||||||||||||||    
T  43824349 atgttcataagttgttttcagcttatttccataagct 43824313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 17368728 - 17368677
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||||||||||||||| |||| |||||||| || ||||||||||||||    
T  17368728 ttttcagcttatttccataacctctccaagatagcttatgaaaacaacttat 17368677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 33533546 - 33533608
Alignment:
Q  8 ttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||||| |||||| |||||||||||||||||| |||||||| || |||||||| |||||    
T  33533546 ttcataagttgttttcaacttatttccataagctctccaagatagcttgtgaaaacaccttat 33533608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 17258887 - 17258952
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    ||||||||||| | |||||||||||||| ||||||||||||| ||||| || |||||||| |||||    
T  17258887 atgttcataagctgttttcagcttattttcataagctcttcaggatagtttatgaaaacagcttat 17258952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 37611219 - 37611279
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaa 64  Q
    ||||||||||| | ||||||| ||||||||||||||||| |||||||| || |||||||||    
T  37611219 atgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaaacaa 37611279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 37787949 - 37788009
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaa 64  Q
    ||||||||||| | ||||||| ||||||||||||||||| |||||||| || |||||||||    
T  37787949 atgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaaacaa 37788009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 12521594 - 12521547
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatag 51  Q
    ||||||||||| | ||||||||||||||||||||||||||||| ||||    
T  12521594 atgttcataagctgttttcagcttatttccataagctcttcaaaatag 12521547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 12242728 - 12242774
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaa 64  Q
    ||||||||||| ||||||||||||| |||||||| || |||||||||    
T  12242728 ttttcagcttacttccataagctctccaagatagcttatgaaaacaa 12242774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 18906403 - 18906349
Alignment:
Q  10 cataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaaca 63  Q
    |||||||| ||||||||||||||| ||||||| |||||||||| || ||||||||    
T  18906403 cataagttgttttcagcttatttcgataagcttttcaagatagcttatgaaaaca 18906349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 36638813 - 36638775
Alignment:
Q  5 atgttcataag-ttttttcagcttatttccataagctct 42  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  36638813 atgttcataagcttttttcagcttatttccataagctct 36638775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 40205092 - 40205142
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaactta 68  Q
    ||||||||||||||| ||||||||| || ||||| || |||||||||||||    
T  40205092 ttttcagcttatttctataagctctccaggatagcttatgaaaacaactta 40205142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 1084125 - 1084190
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||| |||| |||| ||||||||||||||||||||||| ||||  || |||||||| |||||    
T  1084125 atgttcatgagttgtttttagcttatttccataagctcttcatgatatgttatgaaaacagcttat 1084190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 5284464 - 5284517
Alignment:
Q  16 ttttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||||||||||| ||| ||||||||| |||||  | ||||||||||||||    
T  5284464 ttttttcagcttattttcattagctcttcatgatagcctatgaaaacaacttat 5284517  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 11707121 - 11707056
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    ||||| ||||||| |||||||||||||| || ||||||| |||||||| || |||||||| |||||    
T  11707121 atgtttataagttgttttcagcttattttcaaaagctctacaagatagcttatgaaaacagcttat 11707056  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 4014429 - 4014493
Alignment:
Q  6 tgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||||| | |||||||||||||| |||||| ||| |||||||| || |||||||| |||||    
T  4014429 tgttcataagctgttttcagcttattttcataagttctccaagatagcttatgaaaacagcttat 4014493  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 28413286 - 28413334
Alignment:
Q  3 gaatgttcataagtt-ttttcagcttatttccataagctcttcaagata 50  Q
    ||||||||||||| | |||||||||||||||||||| |||| |||||||    
T  28413286 gaatgttcataagctgttttcagcttatttccataaactctccaagata 28413334  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 13907891 - 13907849
Alignment:
Q  26 ttatttccataagctcttcaagatagattttgaaaacaactta 68  Q
    |||||| ||||||||||||||||||| ||||||||||||||||    
T  13907891 ttattttcataagctcttcaagatagcttttgaaaacaactta 13907849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 26694930 - 26694872
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttatgacatat 76  Q
    |||||||||||||| |||||| |||||||||||| || ||||||||| |||| ||||||    
T  26694930 ttttcagcttattttcataagttcttcaagatagtttatgaaaacaatttataacatat 26694872  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 6537013 - 6536972
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttca 45  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  6537013 atgttcataagttgttttcagcttatttccataagctcttca 6536972  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 2205610 - 2205654
Alignment:
Q  20 ttcagcttatttccataagctcttcaagatagattttgaaaacaa 64  Q
    ||||||||||||||||||||||| |||||||| || |||||||||    
T  2205610 ttcagcttatttccataagctctccaagatagcttatgaaaacaa 2205654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 4420709 - 4420645
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaactta 68  Q
    ||||||||||| | ||||||||||||||||||||||||| |||||||| ||  ||||| ||||||    
T  4420709 atgttcataagctgttttcagcttatttccataagctctccaagatagcttaggaaaataactta 4420645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 25100095 - 25100044
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||| |||||||| |||||||||| ||||||| || ||||||||||||||    
T  25100095 ttttcaacttatttctataagctctttaagatagcttatgaaaacaacttat 25100044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 31461647 - 31461596
Alignment:
Q  151 atcttttgttatataagtagtttatacatatgcacttatacagtaagtgctt 202  Q
    ||||||||||||| || ||| ||||||||| ||||||||||| |||||||||    
T  31461647 atcttttgttatagaaatagcttatacataagcacttatacaataagtgctt 31461596  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 31812036 - 31812082
Alignment:
Q  23 agcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    ||||||||| |||||||||| |||||||| || ||||||||||||||    
T  31812036 agcttattttcataagctctccaagatagcttatgaaaacaacttat 31812082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 5564146 - 5564194
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaact 66  Q
    |||||||||||||| ||||| |||||||||| || || |||||||||||    
T  5564146 ttttcagcttatttgcataaactcttcaagacagcttatgaaaacaact 5564194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 7931730 - 7931790
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaa 64  Q
    |||||| |||||| |||||||||||||||| ||||||||  | ||||| ||||||||||||    
T  7931730 atgttcttaagttgttttcagcttatttccgtaagctctgtaggatagcttttgaaaacaa 7931790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 29837095 - 29837151
Alignment:
Q  11 ataagttttttcagcttatttccataagctcttcaagatagattttgaaaacaactt 67  Q
    ||||||| |||||||| |||| ||||||||||||| ||||| || |||||| |||||    
T  29837095 ataagttgtttcagctaattttcataagctcttcaggatagtttatgaaaataactt 29837151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 33788025 - 33787997
Alignment:
Q  10 cataagttttttcagcttatttccataag 38  Q
    |||||||||||||||||||||||||||||    
T  33788025 cataagttttttcagcttatttccataag 33787997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 34430477 - 34430537
Alignment:
Q  16 ttttttcagcttatttccataagctcttcaagatagattttgaaaacaacttatgacatat 76  Q
    |||||||||||||||| |||||  ||| |||||||| || |||||||| ||||| ||||||    
T  34430477 ttttttcagcttattttcataacttctccaagatagcttatgaaaacaccttataacatat 34430537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 36887570 - 36887505
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    ||||||||||| | |||||||||||||| |||||| |||||||||| | || ||||||||||||||    
T  36887570 atgttcataagatgttttcagcttattttcataagttcttcaagatggcttatgaaaacaacttat 36887505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 21367719 - 21367668
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||||||||| |||||| ||| |||||||| || ||||||||||||||    
T  21367719 ttttcagcttattttcataagttctccaagatagcttatgaaaacaacttat 21367668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 482810 - 482852
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaa 60  Q
    |||||||||||||||||||| ||||||||||||| || |||||    
T  482810 ttttcagcttatttccataaactcttcaagatagtttatgaaa 482852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 45432943 - 45432981
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctct 42  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  45432943 atgttcataagttgttttcagcttatttccataagctct 45432981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 27792924 - 27792875
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatagattttgaaaacaactt 67  Q
    ||||||||||||||| ||||||||| || ||||| || ||||||||||||    
T  27792924 ttttcagcttatttctataagctctacatgatagtttatgaaaacaactt 27792875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 33965497 - 33965558
Alignment:
Q  10 cataagtt-ttttcagcttattt-ccataagctcttcaagatagattttgaaaacaacttat 69  Q
    |||||||| |||||||||| ||| |||||||||||||||||||| || |||||||| |||||    
T  33965497 cataagttattttcagctttttttccataagctcttcaagatagcttatgaaaacatcttat 33965558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 36139930 - 36139897
Alignment:
Q  18 ttttcagcttatttccataagctcttcaagatag 51  Q
    |||||||||||||| |||||||||||||||||||    
T  36139930 ttttcagcttattttcataagctcttcaagatag 36139897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 52619069 - 52619004
Alignment:
Q  5 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    ||||||||||| | |||||| ||||||| || |||||||||||||||| || |||||||| |||||    
T  52619069 atgttcataagctattttcaccttattttcacaagctcttcaagatagcttgtgaaaacagcttat 52619004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 47904084 - 47904132
Alignment:
Q  21 tcagcttatttccataagctcttcaagatagattttgaaaacaacttat 69  Q
    ||||||||||||| ||||||||||| ||||| || ||||||| ||||||    
T  47904084 tcagcttatttccgtaagctcttcacgatagcttatgaaaaccacttat 47904132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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