View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17797_high_6 (Length: 541)
Name: NF17797_high_6
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 423 - 533
Target Start/End: Original strand, 24326786 - 24326896
Alignment:
| Q |
423 |
taaggaaaatgatcagatgaatgtaaagggtccgcataagaaatatatctatccaatttcgaacaagctaccaaatgtttccaaagaacgaactacaacc |
522 |
Q |
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| T |
24326786 |
taagtaaaatgataagatgaacgtaaaaggaccgcagaagaaatatatctatccaatttcgaacaagttaccaaatgtttccaaagaacgaactacaacc |
24326885 |
T |
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| Q |
523 |
ctaaaataaat |
533 |
Q |
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| T |
24326886 |
ctaaaataaat |
24326896 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 451
Target Start/End: Original strand, 43294969 - 43295044
Alignment:
| Q |
376 |
gaaacaaggaccaaataaattttttcgatccatccaattgaccaaactaaggaaaatgatcagatgaatgtaaagg |
451 |
Q |
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| T |
43294969 |
gaaacaaagaccggatagattttgtcgatccagccaattgaccaaactgagtaaaatgatcagatcaatataaagg |
43295044 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 34692372 - 34692425
Alignment:
| Q |
251 |
tttgccttcaaccatcaaaaagagggtagcttaattttgtccaagagtttttgt |
304 |
Q |
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| T |
34692372 |
tttgccttcacccaccaaaaagagaggagcttaattttatccaagagttgttgt |
34692425 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 328
Target Start/End: Complemental strand, 11545808 - 11545713
Alignment:
| Q |
232 |
aaaagtaaaattagtagtttttgccttcaaccatcaaaaagagggtagcttaattttgtccaagagtttttgtaacattgattccttgtgattaaaa |
328 |
Q |
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| T |
11545808 |
aaaagtaaaagtagtagttctttccttcaaccacaaaaaagagaggagattaattt-gtctaatagttgttataacttttcttccttgtgattaaaa |
11545713 |
T |
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