View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17797_low_10 (Length: 511)

Name: NF17797_low_10
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17797_low_10
NF17797_low_10
[»] chr3 (6 HSPs)
chr3 (1-247)||(1652223-1652471)
chr3 (301-483)||(1652528-1652710)
chr3 (359-445)||(7966774-7966861)
chr3 (359-464)||(30935086-30935192)
chr3 (350-389)||(25594209-25594249)
chr3 (301-389)||(34575004-34575091)
[»] chr4 (4 HSPs)
chr4 (344-464)||(43373786-43373907)
chr4 (339-431)||(43077265-43077358)
chr4 (336-442)||(35336856-35336964)
chr4 (305-390)||(28967214-28967300)
[»] chr8 (4 HSPs)
chr8 (302-469)||(30235769-30235937)
chr8 (305-445)||(32945353-32945491)
chr8 (409-445)||(25184905-25184941)
chr8 (416-464)||(41791021-41791069)
[»] chr1 (5 HSPs)
chr1 (106-247)||(31930417-31930558)
chr1 (359-445)||(4652072-4652159)
chr1 (359-427)||(37582405-37582474)
chr1 (301-377)||(11839570-11839646)
chr1 (417-445)||(17993876-17993904)
[»] chr7 (3 HSPs)
chr7 (301-445)||(9349997-9350141)
chr7 (108-192)||(29275813-29275899)
chr7 (344-381)||(13312186-13312223)
[»] chr5 (3 HSPs)
chr5 (306-445)||(31742448-31742588)
chr5 (301-414)||(31721986-31722099)
chr5 (358-394)||(6159822-6159858)
[»] chr6 (4 HSPs)
chr6 (383-445)||(6946905-6946967)
chr6 (303-445)||(12794401-12794544)
chr6 (356-389)||(20500293-20500326)
chr6 (339-435)||(26534421-26534517)
[»] chr2 (3 HSPs)
chr2 (356-445)||(29043990-29044080)
chr2 (306-390)||(10173236-10173321)
chr2 (344-381)||(22884809-22884846)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 1652223 - 1652471
Alignment:
Q  1 gcccaatctggctcagacgtgacaaatggtcactataac--caagcttacaattttaatattattttatatttcaataatcatacctaactaattctaaa 98  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1652223 gcccaatctggctcagacgtgacaaatggtcactataacaccaagcttacaattttaatattattttatatttcaataatcatacctaactaattctaaa 1652322  T
Q  99 tcaaaggcaaaagatcaatctcagattgcacgtcagatatgcattaagagcagtaataaagacagtgataaaacgttataggatttatttatagctagtc 198  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  1652323 tcaaaggcaaaagatcaatctcagattgcacgtcagataagcattaagagcagtaataaagacagtgataaaatgttatagaatttatttatagctagtc 1652422  T
Q  199 ataccaagtatttatattcaattcctagctagttatacttaatcccgac 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1652423 ataccaagtatttatattcaattcctagctagttatacttaatcccgac 1652471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 301 - 483
Target Start/End: Original strand, 1652528 - 1652710
Alignment:
Q  301 ggtctctgcacaagacaaacagagatcgatgtaacaaaaagtgcaaactaaatgcgttgtatataggcggaacacccgaaataaacacccacaaagacac 400  Q
    ||||||||||||||||||||||||| |||||| ||| ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  1652528 ggtctctgcacaagacaaacagagaccgatgtcacagaaagtacaaactaaaggcgtcgtatataggcggaacacccgaaataaacacccacaaagacac 1652627  T
Q  401 ccttgtgatcaacagtcataaggacaacacccaccaaaataaacagtatcccctaaaattgacttctatgcttaacaaccact 483  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||  | ||||||||| ||||||||||| ||||||||||||    
T  1652628 ccttgcgatcaacactcataaggacaacacccaccaaaataaacatcaccccctaaaactgacttctatgtttaacaaccact 1652710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 445
Target Start/End: Original strand, 7966774 - 7966861
Alignment:
Q  359 gtatataggcggaacacccgaaat-aaacacccacaaagacacccttgtgatcaacagtcataaggacaacacccaccaaaataaaca 445  Q
    |||||||| ||||||||||||||  ||||||  ||||||||||| ||| |||| |||  ||||| |||||| |||| |||||||||||    
T  7966774 gtatatagacggaacacccgaaaacaaacacaaacaaagacacctttgcgatccacacccataaagacaactcccatcaaaataaaca 7966861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 464
Target Start/End: Original strand, 30935086 - 30935192
Alignment:
Q  359 gtatataggcggaacacccgaaat-aaacacccacaaagacacccttgtgatcaacagtcataaggacaacacccaccaaaataaacagtatcccctaaa 457  Q
    ||||||| ||| |||||||||||  ||||||| ||||||||| || ||| |||||||  | ||||  ||||| |||||||||||||||  | ||||||||    
T  30935086 gtatataagcgaaacacccgaaaacaaacaccaacaaagacaaccctgtaatcaacacccttaagagcaacatccaccaaaataaacatcaccccctaaa 30935185  T
Q  458 attgact 464  Q
    | |||||    
T  30935186 actgact 30935192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 389
Target Start/End: Original strand, 25594209 - 25594249
Alignment:
Q  350 aaatgcgttgtatataggcggaacacccgaaa-taaacacc 389  Q
    |||||||| ||||||||||||||||||||||| ||||||||    
T  25594209 aaatgcgtcgtatataggcggaacacccgaaagtaaacacc 25594249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 389
Target Start/End: Complemental strand, 34575091 - 34575004
Alignment:
Q  301 ggtctctgcacaagacaaacagagatcgatgtaacaaaaagtgcaaactaaatgcgttgtatataggcggaacacccgaaataaacacc 389  Q
    ||||| |||| |||||||||||| | || ||| ||||||||| |||||| || | ||| ||||||| |||||||| | |||||||||||    
T  34575091 ggtctttgcataagacaaacagaaaacgctgttacaaaaagtacaaact-aaggtgttatatatagacggaacactctaaataaacacc 34575004  T

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Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 344 - 464
Target Start/End: Original strand, 43373786 - 43373907
Alignment:
Q  344 caaactaaatgcgttgtatataggcggaacacccgaaataaacaccca-caaagacacccttgtgatcaacagtcataaggacaacacccaccaaaataa 442  Q
    ||||||||| |||||||||||||||| |||||||||||  || ||||| ||||||||||| |||||||||||  ||||||||||||||||||||||||||    
T  43373786 caaactaaaggcgttgtatataggcgaaacacccgaaaacaaaacccaacaaagacacccatgtgatcaacacacataaggacaacacccaccaaaataa 43373885  T
Q  443 acagtatcccctaaaattgact 464  Q
    |||  | ||||||||| |||||    
T  43373886 acatcaccccctaaaactgact 43373907  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 431
Target Start/End: Complemental strand, 43077358 - 43077265
Alignment:
Q  339 aagtgcaaactaaatgcgttgtatataggcggaacacccgaaa-taaacacccacaaagacacccttgtgatcaacagtcataaggacaacacc 431  Q
    |||| ||||| |||| ||| |||||||||| ||||||| |||| |||||||| |||||||||||| || |||||||| ||| ||||||| ||||    
T  43077358 aagtacaaacaaaatacgtcgtatataggcagaacacctgaaaataaacaccaacaaagacacccctgcgatcaacactcaaaaggacatcacc 43077265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 336 - 442
Target Start/End: Complemental strand, 35336964 - 35336856
Alignment:
Q  336 aaaaagtgcaaactaaatgcgttgtatataggcggaacacccgaaat--aaacacccacaaagacacccttgtgatcaacagtcataaggacaacaccca 433  Q
    ||||||| ||||| ||| |||  |||||||| ||||||| ||||||   ||||||| ||||||||||   ||  ||||||| || |||||||||||||||    
T  35336964 aaaaagtacaaacaaaaggcgccgtatatagacggaacatccgaaaataaaacaccaacaaagacacatatgcaatcaacactcgtaaggacaacaccca 35336865  T
Q  434 ccaaaataa 442  Q
    |||||||||    
T  35336864 ccaaaataa 35336856  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 390
Target Start/End: Complemental strand, 28967300 - 28967214
Alignment:
Q  305 tctgcacaagacaaacagagatcgatgtaacaaaaagtgcaaactaaatgcgttgtatataggcggaacacccg-aaataaacaccc 390  Q
    ||||| |||||| ||||||||||| || |||| | | | ||||| ||| ||| ||||||||||||||||||| | ||||||||||||    
T  28967300 tctgctcaagacgaacagagatcggtgaaacagataatacaaacgaaaggcgctgtatataggcggaacacctgaaaataaacaccc 28967214  T

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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 302 - 469
Target Start/End: Original strand, 30235769 - 30235937
Alignment:
Q  302 gtctctgcacaagacaaacagagatcgatgtaacaaaaagtgcaaactaaatgcgttgtatataggcggaacacccgaaat-aaacacccacaaagacac 400  Q
    |||||||| ||||||||||| ||| || ||| ||| || || ||||||||| ||   |||||||||||||||| ||||||  ||||||| ||||||||||    
T  30235769 gtctctgcgcaagacaaacaaagaccggtgttacagaaggtacaaactaaaggctccgtatataggcggaacatccgaaaacaaacaccaacaaagacac 30235868  T
Q  401 ccttgtgatcaacagtcataaggacaacacccaccaaaataaacagtatcccctaaaattgacttctat 469  Q
    ||||| ||||||||  || ||||||||||||||||||||||||||  | ||||||||| ||||| ||||    
T  30235869 ccttgcgatcaacacccaaaaggacaacacccaccaaaataaacatcaccccctaaaactgactcctat 30235937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 305 - 445
Target Start/End: Original strand, 32945353 - 32945491
Alignment:
Q  305 tctgcacaagacaaacagagatcgatgtaacaaaaagtgcaaactaaatgcgttgtatataggcggaacacccgaaataaacacccacaaagacaccctt 404  Q
    ||||||||||||  |||||||| ||||| ||| || || |||||||||   ||||||||||||||||||||||||||  || ||   | |||||||||||    
T  32945353 tctgcacaagacggacagagattgatgttacataaggtacaaactaaagatgttgtatataggcggaacacccgaaaacaaaac---ctaagacaccctt 32945449  T
Q  405 gtgatcaacagtcataagga-caacacccaccaaaataaaca 445  Q
    | |||||||| ||||||||| ||||| |||||||||||||||    
T  32945450 gcgatcaacactcataaggatcaacatccaccaaaataaaca 32945491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 445
Target Start/End: Original strand, 25184905 - 25184941
Alignment:
Q  409 tcaacagtcataaggacaacacccaccaaaataaaca 445  Q
    |||||| |||| |||||||||||||||||||||||||    
T  25184905 tcaacactcatgaggacaacacccaccaaaataaaca 25184941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 464
Target Start/End: Original strand, 41791021 - 41791069
Alignment:
Q  416 tcataaggacaacacccaccaaaataaacagtatcccctaaaattgact 464  Q
    ||||||||||||| ||||||||||||||||  | ||||||||| |||||    
T  41791021 tcataaggacaacccccaccaaaataaacatcaccccctaaaactgact 41791069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 106 - 247
Target Start/End: Complemental strand, 31930558 - 31930417
Alignment:
Q  106 caaaagatcaatctcagattgcacgtcagatatgcattaagagcagtaataaagacagtgataaaacgttataggatttatttatagctagtcataccaa 205  Q
    |||||||||||||||| |||||||| | || |  ||||||||||||||||||||||| ||||| ||| | ||||||||||||| |||| |  || |||||    
T  31930558 caaaagatcaatctcatattgcacgccggagaaacattaagagcagtaataaagacactgatataacataataggatttatttgtagccatccagaccaa 31930459  T
Q  206 gtatttatattcaattcctagctagttatacttaatcccgac 247  Q
    ||||||| ||| |||||||| ||| ||| |||||||||||||    
T  31930458 gtatttacattaaattcctaactaattacacttaatcccgac 31930417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 445
Target Start/End: Complemental strand, 4652159 - 4652072
Alignment:
Q  359 gtatataggcggaacacccgaaat-aaacacccacaaagacacccttgtgatcaacagtcataaggacaacacccaccaaaataaaca 445  Q
    |||||||||||||||||| ||||  ||||||| ||||| | | || |||||||||||  |||||| |||||||||| |||| ||||||    
T  4652159 gtatataggcggaacacctgaaaacaaacaccaacaaaaaaaaccctgtgatcaacacccataagtacaacacccaacaaactaaaca 4652072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 427
Target Start/End: Complemental strand, 37582474 - 37582405
Alignment:
Q  359 gtatataggcggaacacccgaaa-taaacacccacaaagacacccttgtgatcaacagtcataaggacaa 427  Q
    |||||| | |||||||||||||| |||||| | ||||||||||||||  ||||||||  |||||||||||    
T  37582474 gtatattgacggaacacccgaaaataaacatcaacaaagacacccttacgatcaacaaccataaggacaa 37582405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 377
Target Start/End: Complemental strand, 11839646 - 11839570
Alignment:
Q  301 ggtctctgcacaagacaaacagagatcgatgtaacaaaaagtgcaaactaaatgcgttgtatataggcggaacaccc 377  Q
    |||||||||||||||| |||| ||| |  ||| ||| ||||| ||||||||| |||| ||||| | |||||||||||    
T  11839646 ggtctctgcacaagacgaacaaagacctgtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaacaccc 11839570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 445
Target Start/End: Original strand, 17993876 - 17993904
Alignment:
Q  417 cataaggacaacacccaccaaaataaaca 445  Q
    |||||||||||||||||||||||||||||    
T  17993876 cataaggacaacacccaccaaaataaaca 17993904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 301 - 445
Target Start/End: Complemental strand, 9350141 - 9349997
Alignment:
Q  301 ggtctctgcacaagacaaacagagatcgatgtaacaaaaagtgcaaactaaatgcgttgtatataggcggaacacccgaaataaa-cacccacaaagaca 399  Q
    |||||||||||||||| ||||||||||| ||| ||||||||| ||||| ||  |||  |||||||||||||||||| | || ||| |||| |||||||||    
T  9350141 ggtctctgcacaagacgaacagagatcggtgttacaaaaagtacaaaccaag-gcgccgtatataggcggaacacctggaaaaaatcaccaacaaagaca 9350043  T
Q  400 cccttgtgatcaacagtcataaggacaacacccaccaaaataaaca 445  Q
    ||| ||  ||||||   |||||||||||||||||||||||||||||    
T  9350042 cccctgcaatcaacccccataaggacaacacccaccaaaataaaca 9349997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 29275899 - 29275813
Alignment:
Q  108 aaagatcaatctcagattgcacgtcagatatgcat--taagagcagtaataaagacagtgataaaacgttataggatttatttatag 192  Q
    |||||||||||||||||||||||||||| | | ||  |||||||||||| |||||||  |||| ||||  |||| ||||||||||||    
T  29275899 aaagatcaatctcagattgcacgtcagagaagtattataagagcagtaacaaagacacagatataacgaaatagaatttatttatag 29275813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 381
Target Start/End: Complemental strand, 13312223 - 13312186
Alignment:
Q  344 caaactaaatgcgttgtatataggcggaacacccgaaa 381  Q
    ||||||||| || |||||||||||||||||||||||||    
T  13312223 caaactaaaggctttgtatataggcggaacacccgaaa 13312186  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 306 - 445
Target Start/End: Complemental strand, 31742588 - 31742448
Alignment:
Q  306 ctgcacaagacaaacagagatcgatgtaacaaaaagtgcaaactaaatgcgttgtatataggcggaacacccg-aaataaacacccacaaagacaccctt 404  Q
    ||||||||||| |||||||| || ||| |||| |||| ||||| ||| |||  |||||||||||||||||||| ||| |||||||  ||||||| |||||    
T  31742588 ctgcacaagacgaacagagaccggtgttacaagaagtacaaacaaaaggcgccgtatataggcggaacacccgaaaacaaacacctgcaaagactccctt 31742489  T
Q  405 gtgatcaacagtcataaggacaacacccaccaaaataaaca 445  Q
    | |||||| |  ||||||||||||||||||  |||||||||    
T  31742488 gcgatcaaaacccataaggacaacacccactgaaataaaca 31742448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 301 - 414
Target Start/End: Complemental strand, 31722099 - 31721986
Alignment:
Q  301 ggtctctgcacaagacaaacagagatcgatgtaacaaaaagtgcaaactaaatgcgttgtatataggcggaacacccg-aaataaacacccacaaagaca 399  Q
    ||||| |||||||||| |||||||| |||||| ||| ||||| ||||||||  |||  |||||||| ||||||||||| ||| ||||||  |||||| ||    
T  31722099 ggtctttgcacaagacgaacagagaccgatgttacagaaagtacaaactaag-gcgccgtatatagacggaacacccgaaaacaaacactaacaaaggca 31722001  T
Q  400 cccttgtgatcaaca 414  Q
    ||| |||||||||||    
T  31722000 cccatgtgatcaaca 31721986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 394
Target Start/End: Complemental strand, 6159858 - 6159822
Alignment:
Q  358 tgtatataggcggaacacccgaaataaacacccacaa 394  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  6159858 tgtatataggcggaacacccaaaataaacacctacaa 6159822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 383 - 445
Target Start/End: Original strand, 6946905 - 6946967
Alignment:
Q  383 aaacacccacaaagacacccttgtgatcaacagtcataaggacaacacccaccaaaataaaca 445  Q
    ||||||| ||||||||||||||| ||||||||  ||||||||||| |||||||||||||||||    
T  6946905 aaacaccaacaaagacacccttgcgatcaacacccataaggacaaaacccaccaaaataaaca 6946967  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 445
Target Start/End: Complemental strand, 12794544 - 12794401
Alignment:
Q  303 tctctgcacaagacaaacagagatcgatgtaacaaaaagtgcaaactaaatgcgttgtatataggcggaacacccgaaata-aacacccacaaagacacc 401  Q
    |||||||| ||||  |||||||| ||||||   | || || ||||||||| |||  |||||||| ||||||| ||||||   |||||| ||||||||||     
T  12794544 tctctgcataagatgaacagagaccgatgttttagaaggtacaaactaaaggcgccgtatatagacggaacatccgaaaacgaacaccaacaaagacaca 12794445  T
Q  402 cttgtgatcaacagtcataaggacaacacccaccaaaataaaca 445  Q
      || ||||||||  || |||||||||| |||||||||||||||    
T  12794444 tctgcgatcaacacccaaaaggacaacatccaccaaaataaaca 12794401  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 389
Target Start/End: Complemental strand, 20500326 - 20500293
Alignment:
Q  356 gttgtatataggcggaacacccgaaataaacacc 389  Q
    |||||||||||||||||||||| |||||||||||    
T  20500326 gttgtatataggcggaacacccaaaataaacacc 20500293  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 435
Target Start/End: Original strand, 26534421 - 26534517
Alignment:
Q  339 aagtgcaaactaaatgcgttgtatataggcggaacacccgaaataaacacccacaaagacacccttgtgatcaacagtcataaggacaacacccacc 435  Q
    |||| ||||| ||| |||| |||||||||||||||||| ||||  || ||| |||||||||||| ||  || ||||  || ||||||| ||||||||    
T  26534421 aagtacaaacaaaaggcgtcgtatataggcggaacacctgaaaacaataccaacaaagacacccctgcaataaacacccaaaaggacatcacccacc 26534517  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 356 - 445
Target Start/End: Original strand, 29043990 - 29044080
Alignment:
Q  356 gttgtatataggcggaacacccgaaat-aaacacccacaaagacacccttgtgatcaacagtcataaggacaacacccaccaaaataaaca 445  Q
    ||||||||||||||||||||| ||||  ||| ||| |||||||||||| || ||||||||  || ||| ||| ||||||||||||||||||    
T  29043990 gttgtatataggcggaacacctgaaaacaaaaaccaacaaagacacccctgcgatcaacacccaaaagtacatcacccaccaaaataaaca 29044080  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 390
Target Start/End: Original strand, 10173236 - 10173321
Alignment:
Q  306 ctgcacaagacaaacagagatcgatgtaacaaaaagtgcaaactaaatgcgttgtatataggcggaacacccg-aaataaacaccc 390  Q
    |||| |||||| ||||||||||| || |||| | | | ||||||||| ||||||||||||||||||||||| | ||||||||||||    
T  10173236 ctgctcaagacgaacagagatcggtgaaacatataatacaaactaaaagcgttgtatataggcggaacacctgaaaataaacaccc 10173321  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 381
Target Start/End: Original strand, 22884809 - 22884846
Alignment:
Q  344 caaactaaatgcgttgtatataggcggaacacccgaaa 381  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  22884809 caaactaaaggcgtcgtatataggcggaacacccgaaa 22884846  T

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