View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17797_low_11 (Length: 481)
Name: NF17797_low_11
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 19 - 470
Target Start/End: Complemental strand, 31671916 - 31671465
Alignment:
| Q |
19 |
cttcaactaattgttgctccaaattgagggagcaaaggccatgcttatgtggatacatcaaaaaccctaatttgaagcaatatgttaactctcctggttc |
118 |
Q |
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| T |
31671916 |
cttcaactaattgttgctccaaattgagggagcaaaggccatgcttatgtggatacatcaaaaaccctaatttgaggcaatatgttaactctcctggttc |
31671817 |
T |
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| Q |
119 |
taaaagggttgctagtgcttgcaatgttgtcatcccaaattgttaagttcaagtaaactaaaaccatcattttctatatatgaccatccatgaggtatta |
218 |
Q |
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| T |
31671816 |
taaaagggttgctagtgcttgcaatgttgtcatcccaaattgttaagttcaagtaaactaaaaccatcattttctatatatgaccatccatgaggtatta |
31671717 |
T |
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| Q |
219 |
tgtccttttaagtttgtaagttagtataattatctgtggataattaagttattaagataaaaaagcttgatcactatatatattgtgtgtacaatatata |
318 |
Q |
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| T |
31671716 |
tgtccttttaagtttgtaagttagtataattatctttggataattaagttattaagattaaaaagcttgatcactatatatattgtgtgtacaatatata |
31671617 |
T |
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| Q |
319 |
tctgatgtattgtagctttgaacttgtgatttgtacctaacaatgatgaataataagtgatggtgttattatattatctatattcagagtgatattaatc |
418 |
Q |
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| T |
31671616 |
tctgatgtattgtagctttgaacctgtgatttgtacttaacaatgatgaataataagtgatggtgttattatattatctatattcagagtgatattaatt |
31671517 |
T |
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| Q |
419 |
tgctcctacaaattaactctgatatattttaataagtttgtgttgaagaatt |
470 |
Q |
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| T |
31671516 |
tgctcctacaaattaactctgatatattttaataagtttgtgttgaagaatt |
31671465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 275 - 434
Target Start/End: Complemental strand, 31658992 - 31658832
Alignment:
| Q |
275 |
ataaaaaagcttgatcactatatatattgtgtgtacaatatatatctgatgtattgtagctttgaacttgtgatttgtacctaacaatgatgaataat-- |
372 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||| ||||| || |||||| |
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| T |
31658992 |
ataaaaaagcttgatcactatatatattgtgtgtacgatatatatgtgatg--gtgtagctttgaacttgtgatatgtac--tacaataataaataataa |
31658897 |
T |
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| Q |
373 |
--aagtgatggtgttattata-ttatctatattcagagtgatattaatctgctcctacaaattaa |
434 |
Q |
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| T |
31658896 |
taaagtgatggtgttattatatttatctatattcagagtgatattaattttctcgaacaaattaa |
31658832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 186
Target Start/End: Complemental strand, 31659174 - 31659015
Alignment:
| Q |
30 |
tgttgctccaaattgagggagcaaaggccatgcttatgtggatacatcaaaaaccctaatttgaagcaatatgttaactctcctggttctaaaagggttg |
129 |
Q |
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||||||||||||||||||||||||| |||||||| |||| |||||||| | |||| ||| | |||||||||||||||||| | ||| | ||||| |
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| T |
31659174 |
tgttgctccaaattgagggagcaaaccccatgcttctgtgaatacatcagagacccagattacagtcaatatgttaactctcctagagctagagaggttg |
31659075 |
T |
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| Q |
130 |
ctagtgcttgcaatgttgtcatccc---aaattgttaagttcaagtaaactaaaaccatc |
186 |
Q |
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| T |
31659074 |
ctagtgcttgtaatgttgtcatcccgaataattgttaagttcaaataaactaaaaccatc |
31659015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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