View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17797_low_13 (Length: 444)
Name: NF17797_low_13
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 7 - 428
Target Start/End: Original strand, 43540149 - 43540555
Alignment:
| Q |
7 |
gaagcaaaggtaattaaagtatatgatgatatcaacaaaaactataatccaaaattaaactaaattcttgttctttcaggtaactgcagaaacgttgatt |
106 |
Q |
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| T |
43540149 |
gaagccaaggtaattaaagtatatgatgatatcaacaaaaactataatccaaaattaaactaaattcttgttctttcaggtaactgcagaaacgttgatt |
43540248 |
T |
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| Q |
107 |
ctagagagcaaggacaaaggaaaagccattctggatctcatctctattcttaacataaccaaccttgtattgggagtcaaaaagctacggtatataatat |
206 |
Q |
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| T |
43540249 |
ctagagagcaaggacaaaggaaaagccattctggatctcatctctattcttaacataaccaaccttgtattgggagtcaaaaagctacggtata------ |
43540342 |
T |
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| Q |
207 |
atgctactacaactcaattagtgacaatattgtcagtaacatgcatggttaaggaatatttatcttctttaactaattaatgatgttaaattatgtatat |
306 |
Q |
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| T |
43540343 |
---------caactcaattagtgacaatattgtcactaacatgcatggttaaggaatatttatcttctttaactaattaatgatgttaaattatgtatat |
43540433 |
T |
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| Q |
307 |
gaattaacaggcgcaatgataaattaagggaaggagagtttgtgaagaaaaatgcaccaaagacatgtgatgttacattgatttacaatggtgaattgtt |
406 |
Q |
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| T |
43540434 |
gaattaacaggcgcaatgataaattaagggaaggagagtttgtgaagaaaaatgcaccaaagacatgtgatgttacattgatttacaatggtgaattgtt |
43540533 |
T |
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| Q |
407 |
tgtgtatgagattgatgctttt |
428 |
Q |
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| T |
43540534 |
tgtgtatgagattgatgctttt |
43540555 |
T |
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