View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17797_low_15 (Length: 397)
Name: NF17797_low_15
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 13 - 383
Target Start/End: Complemental strand, 50834914 - 50834544
Alignment:
| Q |
13 |
aaaataatgtaacaacataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatagtg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50834914 |
aaaataatgtaacaacataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatagtg |
50834815 |
T |
|
| Q |
113 |
caagaagtgacagagaaaagtaacatgaacaaaattcacgactcaaactgattatttcaaattatccagaatatatttataactctgaaacagaatattg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50834814 |
caagaagtgacagagaaaagtaacatgaacaaaattcacgactcaaactgattatttcaaattatccagaatatatttataactctgaaacagaatattg |
50834715 |
T |
|
| Q |
213 |
ggattgactaataattatgtaaatagaaattacatagacacactaaatatatggttatgggcttggagaattgatgccaagaatccatgtgaaaggtaca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50834714 |
ggattgactaataattatgtaaatagaaattacatagacacactaaatatatggttatgggcttggagaattgatgccaagaatccatgtgaaaggtaca |
50834615 |
T |
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| Q |
313 |
ggagaatatgcccatggaaagacgggattgatgatcaaaagcaaagctcaacactaatgcaaagtcaataa |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50834614 |
ggagaatatgcccatggaaagacgggattgatgatcaaaagcaaagctcaacactaatgcaaagtcaataa |
50834544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 13 - 383
Target Start/End: Original strand, 50840939 - 50841309
Alignment:
| Q |
13 |
aaaataatgtaacaacataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatagtg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50840939 |
aaaataatgtaacaacataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatagtg |
50841038 |
T |
|
| Q |
113 |
caagaagtgacagagaaaagtaacatgaacaaaattcacgactcaaactgattatttcaaattatccagaatatatttataactctgaaacagaatattg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50841039 |
caagaagtgacagagaaaagtaacatgaacaaaattcacgactcaaactgattatttcaaattatccagaatatatttataactctgaaacagaatattg |
50841138 |
T |
|
| Q |
213 |
ggattgactaataattatgtaaatagaaattacatagacacactaaatatatggttatgggcttggagaattgatgccaagaatccatgtgaaaggtaca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50841139 |
ggattgactaataattatgtaaatagaaattacatagacacactaaatatatggttatgggcttggagaattgatgccaagaatccatgtgaaaggtaca |
50841238 |
T |
|
| Q |
313 |
ggagaatatgcccatggaaagacgggattgatgatcaaaagcaaagctcaacactaatgcaaagtcaataa |
383 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50841239 |
ggagaatatgcccatggaaagacgggattgatgatcaaaagcaaagctcaacactaatgcaaagtcaataa |
50841309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 11729784 - 11729626
Alignment:
| Q |
13 |
aaaataatgtaacaacataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatagtg |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11729784 |
aaaataatgtaacaaaataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatagtg |
11729685 |
T |
|
| Q |
113 |
caagaagtgacagagaaaagtaacatgaacaaaattcacgactcaaactgattatttca |
171 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11729684 |
caagaagtgacagagaaaagtaacatgaacaaaattcacgactcaaactgattatttca |
11729626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 23740096 - 23739938
Alignment:
| Q |
13 |
aaaataatgtaacaacataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatagtg |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23740096 |
aaaataatgtaacaaaataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatagtg |
23739997 |
T |
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| Q |
113 |
caagaagtgacagagaaaagtaacatgaacaaaattcacgactcaaactgattatttca |
171 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23739996 |
caagaagtgacagagaaaagtaacatgaacaaaattcacgactcaaactgattatttca |
23739938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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