View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17797_low_16 (Length: 393)
Name: NF17797_low_16
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 32139285 - 32138903
Alignment:
| Q |
1 |
atccttctcctatttttcttcattacaccaactttctctcaacaatctttcaggccaaaagcccttgttctcccagtcacaaaagatggggccacaacaa |
100 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32139285 |
atccttctcctatttttcttcatttcacccactttctctcaacaatctttcaggccaaaagcccttgttctcccaatcacaaaagatggggccacaacaa |
32139186 |
T |
|
| Q |
101 |
accaatacaaagctcaaatcaaccaaagaaccccattagtcccactgaacgtcatcgtcgatctcggtggccagtttctttgggttgactgcgaaaacaa |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32139185 |
accaatacaaagctcaaatcaaccagagaaccccattagtcccactgaacgtcatcgtcgatctcggtggccagtttctttgggttgactgcgaaaacaa |
32139086 |
T |
|
| Q |
201 |
atacatttcttccacataccgccctgcacgctgccgttcagcccaatgctccctcgcaaaatccgacggctgtggtgattgtttctcatcaccaaaacct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32139085 |
atacatttcttccacataccgccctgcacgctgccgttcagcccaatgctcccttgcaaattccgacggctgtggtgattgtttctcatcaccaaaacct |
32138986 |
T |
|
| Q |
301 |
ggctgcaacaacaacacctgtggtgtcaccccggacaatagcattacccacaccgccaccagcggtgaacttgctgatgatgt |
383 |
Q |
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| T |
32138985 |
ggctgcaacaacaacacttgtggtgtcaccccggacaatagcattacccacaccgccaccagcggtgaacttgctgaagatgt |
32138903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 7 - 377
Target Start/End: Complemental strand, 32148669 - 32148299
Alignment:
| Q |
7 |
ctcctatttttcttcattacaccaactttctctcaacaatctttcaggccaaaagcccttgttctcccagtcacaaaagatggggccacaacaaaccaat |
106 |
Q |
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| T |
32148669 |
ctcctatttttcttcatttcacccactttctctaaacaatctttcaggccaaaagccctagttctcccagtcacaaaagatgtcgctaccacaaaccaat |
32148570 |
T |
|
| Q |
107 |
acaaagctcaaatcaaccaaagaaccccattagtcccactgaacgtcatcgtcgatctcggtggccagtttctttgggttgactgcgaaaacaaatacat |
206 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||| |||||| |||||||| ||||||||| | ||||| |
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| T |
32148569 |
acaaagctcaaatcaaccaaagaacaccactagtcccactgaacatcatcgtcgatctcggtggcctgtttctctgggttgattgcgaaaaccagtacat |
32148470 |
T |
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| Q |
207 |
ttcttccacataccgccctgcacgctgccgttcagcccaatgctccctcgcaaaatccgacggctgtggtgattgtttctcatcaccaaaacctggctgc |
306 |
Q |
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||| ||||||||||| |||||||| || || || |||||||||||||| || |||| ||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
32148469 |
ttcctccacataccgtcctgcacggtgtcgctctgcccaatgctcccttgccaaattcgacgactgtggtgtttgtttctcatcaccaaaacctggctgc |
32148370 |
T |
|
| Q |
307 |
aacaacaacacctgtggtgtcaccccggacaatagcattacccacaccgccaccagcggtgaacttgctga |
377 |
Q |
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| T |
32148369 |
aacaacaacacctgcagtgttgccccagggaatagcgttacccagagcgccatgagcggtgaactggctga |
32148299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 11 - 313
Target Start/End: Complemental strand, 32127490 - 32127187
Alignment:
| Q |
11 |
tatttttcttcattacaccaactttctctcaacaatctttcaggccaaaagcccttgttctccc-agtcacaaaagatggggccacaacaaaccaataca |
109 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||| ||||||||||||| | || |||||| |||||||| |
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| T |
32127490 |
tattgttcttcattacaccaactttctctcaacaatcattcagacccaaagcacttgttctccccagtcacaaaagatagcgcaacaacactccaataca |
32127391 |
T |
|
| Q |
110 |
aagctcaaatcaaccaaagaaccccattagtcccactgaacgtcatcgtcgatctcggtggccagtttctttgggttgactgcgaaaacaaatacatttc |
209 |
Q |
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||||||||| ||||||||||||||| |||||||||| ||| | |||| ||||| || ||| | ||||| ||||| ||||| |||||| | |||| ||| |
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| T |
32127390 |
tagctcaaattaaccaaagaaccccactagtcccactaaaccttgtcgttgatcttggcggcaaatttctctgggtcgactgtgaaaaccactacacttc |
32127291 |
T |
|
| Q |
210 |
ttccacataccgccctgcacgctgccgttcagcccaatgctccctcgcaaaatccgacggctgtggtgattgtttctcatcaccaaaacctggctgcaac |
309 |
Q |
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|||||||||||||||| ||| |||| || ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32127290 |
ctccacataccgccctgtacggtgcccctccgcccaatgctccctcgccaaatctgatagctgtggtgattgtttctcatcaccaaaacccggctgcaac |
32127191 |
T |
|
| Q |
310 |
aaca |
313 |
Q |
| |
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|||| |
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| T |
32127190 |
aaca |
32127187 |
T |
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