View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17797_low_17 (Length: 388)
Name: NF17797_low_17
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 372
Target Start/End: Complemental strand, 16829710 - 16829346
Alignment:
| Q |
20 |
tttgagatggtgtggttggttttagggtttgatgtagttcttgttcttttgcttgtgtgcttggatttgaagggcttgatgacatatttacaactgcact |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16829710 |
tttgagatggtgtggttggttttagggtttgatgtagttcttgttcttttgcttgtgtgcttggatttgaagggcttgatgacatgtttacaactgcact |
16829611 |
T |
|
| Q |
120 |
gcaagagtttttgtttgtgcagcaactattaagtgttgcagcaataagaacctgatcattttcaaaacaagaaaacacaacataattgaattagtcaaag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16829610 |
gcaagagtttttgtttgtgcagcaactattaagtgttgcagcaataagaacctgatcattttcaaaacaagaaaacacaacataattgaattagtcaaag |
16829511 |
T |
|
| Q |
220 |
ccatgtttggacaaactacttaattaggtctattcacataaagttttctcatataaactataagtta------------ttttggagagcttacggaaag |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
16829510 |
ccatgtttggacaaactacttaattaggtctattcacataaagttttctcatataaactataagttattttcatagttattttggagagcttatggaaag |
16829411 |
T |
|
| Q |
308 |
aagttcaaatcagtttatgaacatgtcataagccatgtccgaaaattctcactaacaatctcaca |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16829410 |
aagttcaaatcagtttatgaacatgtcataagccatgtctagaaattctcactaacaatctcaca |
16829346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 337
Target Start/End: Original strand, 41052888 - 41052940
Alignment:
| Q |
285 |
tattttggagagcttacggaaagaagttcaaatcagtttatgaacatgtcata |
337 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||| ||||||||||||||||||| |
|
|
| T |
41052888 |
tattttggagagcttatggaaataagttaaaaatagtttatgaacatgtcata |
41052940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 340
Target Start/End: Original strand, 50952357 - 50952408
Alignment:
| Q |
289 |
ttggagagcttacggaaagaagttcaaatcagtttatgaacatgtcataagc |
340 |
Q |
| |
|
|||||||||||| ||||| ||| | ||| ||||||||||||||||||||||| |
|
|
| T |
50952357 |
ttggagagcttatggaaataagcttaaaacagtttatgaacatgtcataagc |
50952408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 37811877 - 37811927
Alignment:
| Q |
290 |
tggagagcttacggaaagaagttcaaatcagtttatgaacatgtcataagc |
340 |
Q |
| |
|
||||||||| | ||||| ||||| ||| ||||||||||||||||||||||| |
|
|
| T |
37811877 |
tggagagctaatggaaataagttgaaaacagtttatgaacatgtcataagc |
37811927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 40943283 - 40943222
Alignment:
| Q |
279 |
ataagttattttggagagcttacggaaagaagttcaaatcagtttatgaacatgtcataagc |
340 |
Q |
| |
|
||||| ||||||||||||||| |||| ||||| ||| |||||||||||||||| |||||| |
|
|
| T |
40943283 |
ataagctattttggagagcttgtagaaataagttgaaaacagtttatgaacatgttataagc |
40943222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 34652092 - 34652032
Alignment:
| Q |
279 |
ataagttattttggagagcttacggaaagaagttcaaatcagtttatgaacatgtcataag |
339 |
Q |
| |
|
||||| ||| |||||||||||| ||||| ||||| ||| ||| ||||| |||||||||||| |
|
|
| T |
34652092 |
ataagctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataag |
34652032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University