View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17797_low_19 (Length: 381)
Name: NF17797_low_19
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 20 - 368
Target Start/End: Original strand, 42028485 - 42028834
Alignment:
| Q |
20 |
agtgcaactatagaaactccataatagcttctccataacaccatataatattattatttatgaaaaagagataaacatgcaagttttacttttcttgatt |
119 |
Q |
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| T |
42028485 |
agtgcaactatagaaactccataatagcttctccataacaccatataatattattatttatgaaaaagagataaacatgcaagttttacttttcttgatt |
42028584 |
T |
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| Q |
120 |
tgacaactccctctcgctgccctaacacagttctgatacgcatttaagtcagtaaaaaacatctcagtgtgcagactttcctcttcctcctccttaccac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42028585 |
tgacaactccctctcgctgccctaacacagttctgatacgcatttaagtcagtaaaaaacatctcagtgtgcagactttcctcttcctcctccttaccac |
42028684 |
T |
|
| Q |
220 |
ctttgtcctttactatatttcta-nnnnnnnnncacttacctaattataatagcttactccacaaacttagaaaattagaatcttttcacattttaaatt |
318 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42028685 |
ctttgtcctttactatatttctattttttttttcacttacctaattataatagcttactccacaaacttagaaaattagaatcttttcacattttaaatt |
42028784 |
T |
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| Q |
319 |
ttggtgaaattgatgcttgtcaactgttttcatgatccatatattgattt |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42028785 |
ttggtgaaattgatgcttgtcaactgttttcatgatccatatattgattt |
42028834 |
T |
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