View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17797_low_2 (Length: 620)
Name: NF17797_low_2
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 1 - 604
Target Start/End: Complemental strand, 53105228 - 53104625
Alignment:
| Q |
1 |
gttgaggaggatattattagatataacaggaagggaaattctttagtggcagatccagtggcttcagatgttaagactaaatgtcttaatttatctacta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53105228 |
gttgaggaggatattattagatataacaggaagggaaagtgtttagtggcagatccagtggcttcagatgttaagactaaatgtcttaatttatctacta |
53105129 |
T |
|
| Q |
101 |
gctcatatggcgtggctaggaagagcagtttgaaccaccaggttgaagttagtccacatatatcagttaccagcagtttttcaaaggttgattcttgggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53105128 |
gctcatatggcgtggctaggaagagcagtttgaaccaccaggttgaagttagtccacatatatcagttaccagcagtttttcaaaggttgattcttgggc |
53105029 |
T |
|
| Q |
201 |
ttatccgaaaggaccaagaggtaaaagaaagcgagctaatgccccaagagttttgtgtattgatgataaagaaaacaatgtctattccactagaagtcca |
300 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53105028 |
ttatccgaaaggaccaagagggaaaagaaagcaagctaatgccccaagagttttgtgtattgatgataaagaaaacaatgtctattccactagaagtcca |
53104929 |
T |
|
| Q |
301 |
gagggccgaaatgttgtgcgtaaatcttgtcttctcccagtttcagctggtcatgctataaaatttgaaacactgcatgatattcgtcccttgttgctgg |
400 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
53104928 |
gagggccgaaatgctgtgcgtaaatcttgtcttctcccagtttcagctggtgatgctataaaatttgaaacactgcatgatatgcgtcccttgttgctgg |
53104829 |
T |
|
| Q |
401 |
agcatgttgaaatattatcaaacaagagtgttgtacaatcgagttcagaaatttctgcttcagttgctccaagtgaaggcataaaaatttcaaatgctaa |
500 |
Q |
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| T |
53104828 |
aacatgttgaaatattatcaaacaagagtgttgtacaatcgagttcagaaatttctgcttcagttgctccaagtgaaggcataaaaatttcaaatgctaa |
53104729 |
T |
|
| Q |
501 |
ccatacatgcaataagcaccgcaaaaaagcatgtgagaaaaacctgccaaagtcttcactgttgaaggaacttagcagattaggtcttcccaaatccaca |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
53104728 |
ccatacatgcaataagcaccgcaaaaaagcatgtgagaaaaacctgccaaagtcttcacttttgaaggaacttagcagattaggtgttcccaaatccaca |
53104629 |
T |
|
| Q |
601 |
ttag |
604 |
Q |
| |
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|||| |
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| T |
53104628 |
ttag |
53104625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Complemental strand, 43917935 - 43917335
Alignment:
| Q |
1 |
gttgaggaggatattattagatataacaggaagggaaattctttagtggcagatccagtggcttcagatgttaagactaaatgtcttaatttatctacta |
100 |
Q |
| |
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||||| |||||||| ||||||||||| ||||||||||| | |||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||| |
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| T |
43917935 |
gttgaagaggatataattagatataagaggaagggaaagtgtttagtggcagatccagtggtgtcagacgttaagactaaacgtcttaatttatctacta |
43917836 |
T |
|
| Q |
101 |
gctcatatggcgtggctaggaagagcagtttgaaccaccaggttgaagttagtccacatatatcagttaccagcagtttttcaaaggttgattcttgggc |
200 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| || ||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
43917835 |
cctcatatggagtggctaggaagagcagtttgaaccaccagattgaatttagtccgcagatatcagttacaagcagtttttcaaagattgattcttgggc |
43917736 |
T |
|
| Q |
201 |
ttatccgaaaggaccaagaggtaaaagaaagcgagctaatgccccaagagttttgtgtattgatgataaagaaaacaatgtctattccactagaagtcca |
300 |
Q |
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|| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43917735 |
ttgtccaaaaggaccaagaggtaaaagaaagcgagctaatgccccaagagttttgggtattgatgataaagaaaacaatgtctattccactagaagttta |
43917636 |
T |
|
| Q |
301 |
gagggccgaaatgttgtgcgtaaatcttgtcttctcccagtttcagctggtcatgctataaaatttgaaacactgcatgatattcgtcccttgttgctgg |
400 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
43917635 |
gagggccgaaatgctgtgcgtaaatctcgtcttctcccagtttcagctggtgatgctataaaatttgaaaacctgcatgatatgcgtcccttgttgctgg |
43917536 |
T |
|
| Q |
401 |
agcatgttgaaatattatcaaacaagagtgttgtacaatcgagttcagaaatttctgcttcagttgctccaagtgaaggcataaaaatttcaaatgctaa |
500 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43917535 |
cacatgttgaaatattatcaaacaagagtgttgtacaatcgagttcagaaatttccgcttcagttggtccaagtgaaggcataaaaatttcaaatgctaa |
43917436 |
T |
|
| Q |
501 |
ccatacatgcaataagcaccgcaaaaaagcatgtgagaaaaacctgccaaagtcttcactgttgaaggaacttagcagattaggtcttcccaaatccaca |
600 |
Q |
| |
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||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| |
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| T |
43917435 |
ccacacatgcaatgagcaccgcaaaaaagcatgtgagaaaaacctgccaaagtcttcacttttgaaggaacttatcagattaggtgttcccaaatccaca |
43917336 |
T |
|
| Q |
601 |
t |
601 |
Q |
| |
|
| |
|
|
| T |
43917335 |
t |
43917335 |
T |
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