View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17797_low_20 (Length: 377)

Name: NF17797_low_20
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17797_low_20
NF17797_low_20
[»] chr4 (35 HSPs)
chr4 (21-301)||(2242560-2242862)
chr4 (9-263)||(19721433-19721699)
chr4 (9-263)||(15476470-15476738)
chr4 (9-263)||(2295504-2295768)
chr4 (9-257)||(53018302-53018557)
chr4 (9-262)||(45774136-45774399)
chr4 (29-253)||(40217714-40217949)
chr4 (22-252)||(27675587-27675834)
chr4 (141-257)||(47922736-47922852)
chr4 (12-110)||(35103405-35103503)
chr4 (134-245)||(7208267-7208378)
chr4 (133-257)||(22588269-22588393)
chr4 (149-214)||(35103284-35103349)
chr4 (160-252)||(45661960-45662052)
chr4 (52-106)||(47922903-47922957)
chr4 (144-250)||(44987546-44987656)
chr4 (205-257)||(6008407-6008459)
chr4 (149-228)||(10037710-10037789)
chr4 (175-267)||(25059108-25059199)
chr4 (20-77)||(6008346-6008403)
chr4 (133-182)||(35823309-35823358)
chr4 (30-107)||(35823490-35823567)
chr4 (161-245)||(28101750-28101834)
chr4 (135-253)||(10632299-10632415)
chr4 (210-257)||(53586595-53586642)
chr4 (35-77)||(1052463-1052505)
chr4 (35-97)||(7208425-7208487)
chr4 (149-252)||(4776036-4776138)
chr4 (39-107)||(25059431-25059499)
chr4 (21-59)||(53586545-53586583)
chr4 (46-84)||(4775959-4775997)
chr4 (211-252)||(4110104-4110145)
chr4 (216-253)||(23940987-23941024)
chr4 (21-66)||(24917669-24917714)
chr4 (216-252)||(47532736-47532772)
[»] chr5 (31 HSPs)
chr5 (9-290)||(29230782-29231070)
chr5 (9-263)||(19099774-19100041)
chr5 (133-257)||(31113727-31113852)
chr5 (29-110)||(3387431-3387512)
chr5 (29-110)||(32076426-32076507)
chr5 (133-257)||(32076263-32076389)
chr5 (133-245)||(28470067-28470180)
chr5 (21-109)||(31113888-31113976)
chr5 (135-257)||(16755803-16755926)
chr5 (37-110)||(39935771-39935844)
chr5 (133-257)||(8802542-8802666)
chr5 (20-107)||(5836647-5836734)
chr5 (37-107)||(8802709-8802779)
chr5 (205-257)||(8229493-8229545)
chr5 (29-77)||(26565107-26565155)
chr5 (144-245)||(39700761-39700861)
chr5 (51-108)||(31210743-31210802)
chr5 (21-77)||(34764588-34764644)
chr5 (133-201)||(36906863-36906930)
chr5 (205-305)||(2627765-2627877)
chr5 (23-77)||(8229435-8229489)
chr5 (20-66)||(27925683-27925729)
chr5 (22-77)||(2627881-2627936)
chr5 (133-200)||(31210640-31210707)
chr5 (210-252)||(27925821-27925863)
chr5 (186-257)||(7057327-7057399)
chr5 (216-267)||(7732556-7732607)
chr5 (133-252)||(39935883-39936001)
chr5 (186-252)||(36906953-36907019)
chr5 (211-263)||(26565165-26565218)
chr5 (30-75)||(41368761-41368806)
[»] chr1 (31 HSPs)
chr1 (29-263)||(25294362-25294608)
chr1 (9-263)||(41827804-41828069)
chr1 (144-263)||(31513353-31513472)
chr1 (160-305)||(40694143-40694285)
chr1 (21-110)||(4966827-4966916)
chr1 (21-110)||(4972966-4973055)
chr1 (141-263)||(17116526-17116652)
chr1 (29-292)||(38682618-38682888)
chr1 (9-114)||(17116380-17116485)
chr1 (29-110)||(40032785-40032866)
chr1 (22-110)||(13643915-13644003)
chr1 (133-257)||(14287289-14287413)
chr1 (9-96)||(50726782-50726869)
chr1 (133-252)||(271240-271359)
chr1 (21-77)||(13558626-13558682)
chr1 (21-104)||(14287161-14287245)
chr1 (133-237)||(13644039-13644140)
chr1 (133-201)||(40032900-40032968)
chr1 (172-263)||(4966994-4967085)
chr1 (186-253)||(49899480-49899547)
chr1 (170-252)||(4972809-4972891)
chr1 (133-253)||(22790887-22791003)
chr1 (68-114)||(31513514-31513560)
chr1 (37-107)||(51898828-51898897)
chr1 (172-252)||(16123081-16123160)
chr1 (133-245)||(31183717-31183829)
chr1 (205-252)||(11767516-11767563)
chr1 (216-290)||(35160449-35160524)
chr1 (29-77)||(11767567-11767613)
chr1 (31-68)||(40694083-40694120)
chr1 (210-245)||(10443776-10443811)
[»] chr3 (32 HSPs)
chr3 (9-263)||(46979080-46979345)
chr3 (154-263)||(7628916-7629023)
chr3 (133-257)||(20369004-20369127)
chr3 (29-110)||(51240867-51240947)
chr3 (133-245)||(52695340-52695453)
chr3 (133-257)||(29324350-29324472)
chr3 (19-114)||(7629084-7629179)
chr3 (155-257)||(2119136-2119237)
chr3 (20-110)||(39614936-39615026)
chr3 (20-77)||(45472740-45472797)
chr3 (141-246)||(32835481-32835585)
chr3 (20-77)||(38489651-38489708)
chr3 (29-123)||(29324233-29324329)
chr3 (205-252)||(45472801-45472848)
chr3 (31-77)||(17063888-17063934)
chr3 (20-86)||(53530616-53530682)
chr3 (210-288)||(35296684-35296764)
chr3 (189-286)||(39614759-39614859)
chr3 (21-77)||(36504964-36505020)
chr3 (205-257)||(36505024-36505076)
chr3 (133-197)||(53530484-53530547)
chr3 (210-257)||(20178777-20178824)
chr3 (37-94)||(40614979-40615036)
chr3 (133-201)||(40615116-40615184)
chr3 (28-107)||(21853837-21853916)
chr3 (210-257)||(27163827-27163874)
chr3 (216-262)||(31518965-31519011)
chr3 (133-202)||(35053610-35053679)
chr3 (160-252)||(51240705-51240798)
chr3 (219-267)||(12736793-12736841)
chr3 (269-317)||(45472877-45472925)
chr3 (186-257)||(52203716-52203785)
[»] chr7 (25 HSPs)
chr7 (20-263)||(42040184-42040438)
chr7 (29-257)||(45647961-45648196)
chr7 (29-252)||(47843504-47843742)
chr7 (21-257)||(45492312-45492562)
chr7 (22-108)||(42509313-42509399)
chr7 (54-252)||(43728101-43728311)
chr7 (133-257)||(22542669-22542792)
chr7 (133-257)||(2185473-2185598)
chr7 (21-110)||(2185638-2185727)
chr7 (38-110)||(25310899-25310971)
chr7 (133-238)||(3751247-3751351)
chr7 (9-102)||(25482505-25482598)
chr7 (20-114)||(3751381-3751477)
chr7 (205-257)||(40837276-40837329)
chr7 (20-72)||(45804985-45805037)
chr7 (205-252)||(7858209-7858256)
chr7 (205-263)||(25310736-25310795)
chr7 (21-72)||(40836532-40836583)
chr7 (210-268)||(48153238-48153297)
chr7 (21-77)||(48153175-48153229)
chr7 (133-177)||(25310819-25310863)
chr7 (205-257)||(43495618-43495670)
chr7 (31-86)||(22201255-22201310)
chr7 (31-86)||(22236511-22236566)
chr7 (29-77)||(43495674-43495722)
[»] chr8 (32 HSPs)
chr8 (9-263)||(11789101-11789366)
chr8 (134-263)||(9410136-9410264)
chr8 (29-257)||(18928292-18928531)
chr8 (149-265)||(26079544-26079660)
chr8 (133-257)||(24728279-24728411)
chr8 (21-110)||(24728449-24728538)
chr8 (139-214)||(6166708-6166783)
chr8 (133-257)||(16591156-16591282)
chr8 (9-76)||(9410060-9410127)
chr8 (186-257)||(13003565-13003636)
chr8 (12-114)||(6166567-6166669)
chr8 (29-110)||(24888658-24888739)
chr8 (29-110)||(25430174-25430255)
chr8 (21-107)||(11990887-11990973)
chr8 (21-107)||(12006841-12006927)
chr8 (137-252)||(24888506-24888620)
chr8 (30-109)||(31332524-31332603)
chr8 (149-250)||(31431065-31431167)
chr8 (38-107)||(31431280-31431349)
chr8 (172-252)||(11755451-11755531)
chr8 (133-202)||(11991014-11991083)
chr8 (29-77)||(17748796-17748844)
chr8 (205-257)||(23877230-23877282)
chr8 (137-252)||(25430293-25430406)
chr8 (205-242)||(17748755-17748792)
chr8 (212-252)||(18322089-18322129)
chr8 (263-299)||(18322153-18322189)
chr8 (33-77)||(32856173-32856217)
chr8 (205-245)||(32856221-32856261)
chr8 (46-77)||(23877286-23877317)
chr8 (264-306)||(22486043-22486085)
chr8 (141-253)||(37232054-37232167)
[»] chr6 (23 HSPs)
chr6 (9-262)||(2032078-2032348)
chr6 (29-257)||(687815-688052)
chr6 (22-110)||(32340168-32340256)
chr6 (133-239)||(32340024-32340130)
chr6 (22-110)||(22297261-22297349)
chr6 (143-236)||(22297118-22297211)
chr6 (21-107)||(12283614-12283700)
chr6 (21-77)||(2988051-2988107)
chr6 (31-107)||(12311919-12311995)
chr6 (186-257)||(30928568-30928639)
chr6 (21-77)||(7434963-7435019)
chr6 (20-107)||(8486082-8486171)
chr6 (133-229)||(22054307-22054400)
chr6 (205-257)||(7435023-7435075)
chr6 (205-257)||(10229649-10229701)
chr6 (134-253)||(1929160-1929274)
chr6 (205-251)||(2988001-2988047)
chr6 (29-79)||(10229597-10229647)
chr6 (20-66)||(30928454-30928500)
chr6 (68-109)||(22054224-22054265)
chr6 (269-317)||(8486353-8486401)
chr6 (271-319)||(22054482-22054530)
chr6 (30-106)||(26546011-26546086)
[»] chr2 (35 HSPs)
chr2 (141-263)||(42794501-42794623)
chr2 (133-252)||(7018093-7018210)
chr2 (9-114)||(42794661-42794766)
chr2 (134-246)||(41324162-41324274)
chr2 (133-252)||(17328984-17329103)
chr2 (29-251)||(30382547-30382780)
chr2 (21-113)||(17328855-17328947)
chr2 (21-245)||(35306232-35306469)
chr2 (133-257)||(37272642-37272766)
chr2 (20-110)||(41324030-41324119)
chr2 (9-239)||(38140867-38141105)
chr2 (133-252)||(21813066-21813185)
chr2 (29-110)||(30485743-30485824)
chr2 (21-77)||(40498765-40498821)
chr2 (133-239)||(45389018-45389124)
chr2 (210-263)||(40498830-40498883)
chr2 (133-236)||(30485858-30485962)
chr2 (40-108)||(37272802-37272870)
chr2 (205-257)||(40364013-40364065)
chr2 (170-257)||(5591013-5591100)
chr2 (133-238)||(40083209-40083318)
chr2 (133-229)||(44364692-44364785)
chr2 (21-84)||(11457956-11458019)
chr2 (21-70)||(7017979-7018028)
chr2 (30-107)||(40083089-40083166)
chr2 (20-77)||(40363953-40364009)
chr2 (186-250)||(11562009-11562073)
chr2 (22-77)||(8948171-8948226)
chr2 (21-80)||(12599166-12599225)
chr2 (160-252)||(38595806-38595899)
chr2 (68-109)||(44364609-44364650)
chr2 (221-257)||(25576205-25576241)
chr2 (133-177)||(36925801-36925845)
chr2 (133-201)||(43344679-43344747)
chr2 (271-319)||(44364867-44364915)
[»] scaffold0565 (2 HSPs)
scaffold0565 (133-263)||(8168-8303)
scaffold0565 (9-114)||(8033-8138)
[»] scaffold0015 (1 HSPs)
scaffold0015 (186-252)||(38306-38372)
[»] scaffold0495 (2 HSPs)
scaffold0495 (205-263)||(6364-6422)
scaffold0495 (29-79)||(6312-6362)
[»] scaffold0027 (1 HSPs)
scaffold0027 (160-224)||(8296-8360)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 21 - 301
Target Start/End: Complemental strand, 2242862 - 2242560
Alignment:
Q  21 gagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaatgtaaattgtt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  2242862 gagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgtttctctcgatatcccaacatatgaaaatgtaaatggtt 2242763  T
Q  121 tatnnnnnnnnntta-----------ttttaatcacatgtattattttttaa-aaattgtaacttttataataatacaataatgaagagtaatcggtgtt 208  Q
    |||         |||           |||| |||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  2242762 tataaaaaaactttaaaaaaaaattattttgatcacatgtattatttttttttaaattgtaacttttataataatacaataatgaagagtaatcggtgtt 2242663  T
Q  209 aattttcttcaagtattttacatacatataagttttattataaatttttct----------taacatattgtatcctaaattttaaaaaatttgtatatc 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||          |||| ||||||||||||||||||||||||||||| ||||    
T  2242662 aattttcttcaagtattttacatacatataagttttattataaatttttcttaatgtatcataacgtattgtatcctaaattttaaaaaatttgtgtatc 2242563  T
Q  299 cac 301  Q
    |||    
T  2242562 cac 2242560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 9 - 263
Target Start/End: Complemental strand, 19721699 - 19721433
Alignment:
Q  9 gatgaacgttgcgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaa 108  Q
    ||||||||| ||||||||  ||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||    
T  19721699 gatgaacgtagcgagagatgtgattcaattaatcaacattagataaaatttgtgttgagttcttttaatgatgtttctctcaatatcctaacatatgaaa 19721600  T
Q  109 atgtaa-attgtttatnnnnnnnnntt-----------attttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaaga 196  Q
    || ||| || ||||||         ||           ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19721599 atttaatatggtttataagaaaactttcaaaaaaaattattttgatcacatgtattatttttaaaaaattgtaacttttataataatacaataatgaaga 19721500  T
Q  197 gtaatcggtgttaattttcttcaagtattttacatacatataagttttattataaatttttcttaac 263  Q
    ||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19721499 gtaatcaatattaattttcttcaagtattttacatacatataagttttattataaatttttgttaac 19721433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 9 - 263
Target Start/End: Complemental strand, 15476738 - 15476470
Alignment:
Q  9 gatgaacgttgcgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaa 108  Q
    ||||||||| ||||||||  ||||| | |||||||| ||||||||||||||| |||||||||||||||||||| || |||||||| |||||| |||||||    
T  15476738 gatgaacgtagcgagagaagtgatttaattaatcaacattagataaaatttgcgttgagttcttttaatgatgtttttctcgataacccaacttatgaaa 15476639  T
Q  109 atgtaa-attgtttatnnnnnnnnnt-------------tattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaa 194  Q
    |||||| || ||||||         |             |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15476638 atgtaatatggtttataagaaaactttcaaaaaaaaaattattttgatcacatgtattattgtttaaaaattgtaacttttataataatacaataatgaa 15476539  T
Q  195 gagtaatcggtgttaattttcttcaagtattttacatacatataagttttattataaatttttcttaac 263  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  15476538 gagtaatcggtgttacttttcttcaagtattttacatacatataaattttattataaatttttgttaac 15476470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 9 - 263
Target Start/End: Original strand, 2295504 - 2295768
Alignment:
Q  9 gatgaacgttgcgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaa 108  Q
    ||||||||| ||||||||  | |||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||    
T  2295504 gatgaacgtagcgagagatgtaattcagttaatcaacattagataaaatttgtgttgagttcttttaacgatgtttctctcaatatcccaacatatgaaa 2295603  T
Q  109 atgtaa-attgtttatnnnnnnnnntta----------ttttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagag 197  Q
    |||||| || ||||||         |||          || | ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  2295604 atgtaatatggtttataagaaaactttaaaataaaatattctgatcacatgtataatttttaaaaaattgtaacttttataataatacaataatgaagag 2295703  T
Q  198 taatcggtgttaattttcttcaagtattttacatacatataagttttattataaatttttcttaac 263  Q
    ||||   |||| ||||||||||||||||||| ||||||||||| |||||||||| ||||| |||||    
T  2295704 taattaatgttgattttcttcaagtattttatatacatataag-tttattataattttttgttaac 2295768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 9 - 257
Target Start/End: Complemental strand, 53018557 - 53018302
Alignment:
Q  9 gatgaacgttgcgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaa 108  Q
    ||||||| | |||||| || |||||||||||||||| |||| ||||||||| ||||||||||||||||||||| |||||||||| |||  ||||||||||    
T  53018557 gatgaacatagcgagataggtgattcagttaatcaacattaaataaaatttatgttgagttcttttaatgatgtttctctcgatgtcctgacatatgaaa 53018458  T
Q  109 atgtaa-attgttta---------tnnnnnnnnnttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagt 198  Q
    |||||| || || ||         |         ||||||| | ||||||||||||| || ||||||||||||||||||||||   ||||||||||||||    
T  53018457 atgtaatatggtataagaaaactttcaaaatttattattttgaccacatgtattattcttaaaaaattgtaacttttataata---caataatgaagagt 53018361  T
Q  199 aatcggtgttaattttcttcaagtattttacatacatataagttttattataaattttt 257  Q
    || |  ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  53018360 aaacaatgttaattttcttcaagtattttacatacatataagttttattataatttttt 53018302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 9 - 262
Target Start/End: Original strand, 45774136 - 45774399
Alignment:
Q  9 gatgaacgttgcgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaa 108  Q
    ||||||||| ||||||||| |||||||||||| ||| ||| |||||||||||| ||||||||||||||||||| |||||  ||||||||||| ||| |||    
T  45774136 gatgaacgtagcgagagaggtgattcagttaaccaacatttgataaaatttgtcttgagttcttttaatgatgtttctcctgatatcccaacgtataaaa 45774235  T
Q  109 atgtaaattg-tttatnnnnnnnnntt----------attttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagag 197  Q
    ||||||  || |||||         ||          ||||| |||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||    
T  45774236 atgtaatatgatttataagaaaactttcaaaaaaattattttgatcacatgtatt-ttttaaaaaaattgtaacttttataataatacaataatgaatag 45774334  T
Q  198 taatcggtgttaattttcttcaagtattttacatacatataagttttattataaatttttcttaa 262  Q
    | |||||||||||||||||| |||||||||||||| | |||||| ||||||||| ||||| ||||    
T  45774335 ttatcggtgttaattttcttgaagtattttacatatagataagtattattataagtttttgttaa 45774399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 29 - 253
Target Start/End: Original strand, 40217714 - 40217949
Alignment:
Q  29 tgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaatgtaa-attgtttatnnnn 127  Q
    |||||||||||| ||| |||||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||||| ||| || ||||||        
T  40217714 tgattcagttaaacaacattagataaaatttgtgttgagtt-ttataatgatgtttctcgcgatatcccaacatatgaaaatataatatggtttataaga 40217812  T
Q  128 nnnnnt----------tattttaatcacatgtattattttttaaaaa-ttgtaacttttataataatacaataatgaagagtaatcggtgttaattttct 216  Q
         |          ||||||||||| || |||||||||| ||||| |||| ||||||||||||||| |||  ||||||||||||  |||| |||||||    
T  40217813 aaatttaacatttttttattttaatcatatatattatttttaaaaaaattgtgacttttataataatataatcttgaagagtaatcaatgtttattttct 40217912  T
Q  217 tcaagtattttacatacatataagttttattataaat 253  Q
    |||||||||||| |||||||||||||||| |||||||    
T  40217913 tcaagtattttatatacatataagttttagtataaat 40217949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 22 - 252
Target Start/End: Original strand, 27675587 - 27675834
Alignment:
Q  22 agagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaatgtaa-attgtt 120  Q
    |||||| ||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| || |||    
T  27675587 agagaggtgatttagttaattaatatcagataaaatttgtgttgagttcttttaatgatgcttatctcgatatcccaacatatgaaaatataatatggtt 27675686  T
Q  121 tatnnnnnnnnnt-------------tattttaatcacatgtattattttttaaaaattgtaactttt---ataataatacaataatgaagagtaatcgg 204  Q
    |||         |             |||||| ||||| |||||||||||| ||||||| | ||||||   ||||||||| ||| |||||||||| ||      
T  27675687 tataagaaaactttacattttttatttattttgatcacgtgtattatttttaaaaaattatgacttttataataataatataattatgaagagtactcaa 27675786  T
Q  205 tgttaattttcttcaagtattttacatacatataagttttattataaa 252  Q
     ||| ||||||||||||||||||||| | |||||||||||||||||||    
T  27675787 agtttattttcttcaagtattttacacatatataagttttattataaa 27675834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 141 - 257
Target Start/End: Complemental strand, 47922852 - 47922736
Alignment:
Q  141 atcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataag 240  Q
    |||||||||||||||||| ||||  || ||||||||||||||||||||||||||||||||||  || | ||||||||||| ||||||| |||||| || |    
T  47922852 atcacatgtattatttttaaaaatctgaaacttttataataatacaataatgaagagtaatcaatgcttattttcttcaaatattttagatacatgtatg 47922753  T
Q  241 ttttattataaattttt 257  Q
    |||||||||||||||||    
T  47922752 ttttattataaattttt 47922736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 35103503 - 35103405
Alignment:
Q  12 gaacgttgcgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaat 110  Q
    |||||| ||||||||| ||||| |||||  ||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  35103503 gaacgtagcgagagaggtgatttagttacacaacattagataaaatttgtgttgagttcttttaataatgtttctctcgatatcccaacatatgaaaat 35103405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 7208378 - 7208267
Alignment:
Q  134 tattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatac 233  Q
    |||||| ||||||||||| |||||| ||||||||  | |||||||||||||  ||||||||||||||||  |||| ||||||||||| ||||||||||||    
T  7208378 tattttgatcacatgtatcatttttaaaaaattgatagttttataataatatgataatgaagagtaatcaatgtttattttcttcaaatattttacatac 7208279  T
Q  234 atataagtttta 245  Q
    ||||||||||||    
T  7208278 atataagtttta 7208267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 22588269 - 22588393
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacata 232  Q
    ||||||| |||||| ||||||||||  || |||||   |||||||||||||| || ||||||||||||||  |||| ||||||||||||||||||| |||    
T  22588269 ttattttgatcacaagtattattttaaaacaattgcttcttttataataatataacaatgaagagtaatcaatgtttattttcttcaagtattttatata 22588368  T
Q  233 catataagttttattataaattttt 257  Q
    ||||||||||||| ||||| |||||    
T  22588369 catataagttttagtataatttttt 22588393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 35103349 - 35103284
Alignment:
Q  149 tattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaatttt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||    
T  35103349 tattattttttaaaaattgtaacttttataataatacaataataaagagtaatcaatgttaatttt 35103284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 45661960 - 45662052
Alignment:
Q  160 aaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagttttattataaa 252  Q
    ||||||||| ||||||||||||||| ||||||||| |||||||  || | ||||||||||| |||||||||| ||||||||||||| ||||||    
T  45661960 aaaaattgtgacttttataataatataataatgaaaagtaatcaatgatgattttcttcaaatattttacatgcatataagttttagtataaa 45662052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 47922957 - 47922903
Alignment:
Q  52 taaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatga 106  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  47922957 taaaatttgtgttgagttcttttaatgacgcttctctcgatatcccaacatatga 47922903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 250
Target Start/End: Original strand, 44987546 - 44987656
Alignment:
Q  144 acatgtattattttttaaaaattgtaacttttataataatacaata----atgaagagtaatcggtgttaattttcttcaagtattttacatacatataa 239  Q
    ||||||||||||||| ||||||||  ||||||||||||||| ||||    |  ||||||||||| || | ||||||||||||||||||||||  ||||||    
T  44987546 acatgtattatttttaaaaaattgcgacttttataataatataatataataataagagtaatcgttgcttattttcttcaagtattttacatgaatataa 44987645  T
Q  240 gttttattata 250  Q
    |||||| ||||    
T  44987646 gttttagtata 44987656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 6008407 - 6008459
Alignment:
Q  205 tgttaattttcttcaagtattttacatacatataagttttattataaattttt 257  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  6008407 tgtttattttcttcaagtattttacatacatataagttttaatataaattttt 6008459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 10037789 - 10037710
Alignment:
Q  149 tattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtatttta 228  Q
    ||||| |||| ||||||| | ||||||||||||||| |||||| ||||||||||  || |||||||||||||||||||||    
T  10037789 tattagttttaaaaaattatgacttttataataatataataataaagagtaatcaatgctaattttcttcaagtatttta 10037710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 267
Target Start/End: Complemental strand, 25059199 - 25059108
Alignment:
Q  175 tataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagttttattat-aaatttttcttaacatat 267  Q
    ||||||| || |||||||||||||| ||  |||| ||||||||||||||||||||||||||||||  |||| ||| |||||||| |||||||||    
T  25059199 tataatagtagaataatgaagagtactcaatgtttattttcttcaagtattttacatacatataa--tttagtataaaatttttgttaacatat 25059108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 6008346 - 6008403
Alignment:
Q  20 cgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaat 77  Q
    |||||||| ||||||||||||| || |||| |||||||||||||||||||||||||||    
T  6008346 cgagagaggtgattcagttaataaacattaaataaaatttgtgttgagttcttttaat 6008403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 35823358 - 35823309
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataa 182  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  35823358 ttattttgatcacatgtattattttttaaaaattgtgacttttataataa 35823309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 35823567 - 35823490
Alignment:
Q  30 gattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaa 107  Q
    |||||| |||||||| |||| | |||||||||||||||||||||||||||  ||||| | ||||||| ||||||||||    
T  35823567 gattcaattaatcaacattatacaaaatttgtgttgagttcttttaatgacacttctattgatatcctaacatatgaa 35823490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 28101834 - 28101750
Alignment:
Q  161 aaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagtttta 245  Q
    |||||||| || |||||| ||||| |||||| ||||||||||  || | |||||||||||||||||| ||| |||||||||||||    
T  28101834 aaaattgtgacatttatactaatataataataaagagtaatcaatgcttattttcttcaagtattttgcatgcatataagtttta 28101750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 253
Target Start/End: Original strand, 10632299 - 10632415
Alignment:
Q  135 attttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacataca 234  Q
    ||||| |||||||||||||||||||  ||||||| || ||||| || ||| |||| |||| |||||||  ||||  |||| |||||||||||||||| ||    
T  10632299 attttgatcacatgtattattttttgtaaattgtgacatttatgattatataatattgaatagtaatcaatgtt--tttttttcaagtattttacatgca 10632396  T
Q  235 tataagttttattataaat 253  Q
    ||||| ||||  |||||||    
T  10632397 tataaattttcatataaat 10632415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 257
Target Start/End: Original strand, 53586595 - 53586642
Alignment:
Q  210 attttcttcaagtattttacatacatataagttttattataaattttt 257  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||    
T  53586595 attttcttcaagtattttacataaatataagttttagtataaattttt 53586642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 1052463 - 1052505
Alignment:
Q  35 agttaatcaatattagataaaatttgtgttgagttcttttaat 77  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  1052463 agttaatcaacattagataaaatttgtgttgagttcttttaat 1052505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 7208487 - 7208425
Alignment:
Q  35 agttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatccc 97  Q
    ||||||||||  |||||||||| || |||||||| |||||||||||| |||||||||||||||    
T  7208487 agttaatcaactttagataaaaattttgttgagtccttttaatgatgtttctctcgatatccc 7208425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 4776036 - 4776138
Alignment:
Q  149 tattattttttaaaaattgtaacttttataataatacaataatgaagag-taatcggtgttaattttcttcaagtattttacatacatataagttttatt 247  Q
    ||||| |||| ||||||||  ||||||||||||||| || |||||| || |||||  || | |||||  ||||||||||||||||||||||||||||| |    
T  4776036 tattaattttaaaaaattg--acttttataataatataacaatgaaaagataatcaatgcttatttttatcaagtattttacatacatataagttttaat 4776133  T
Q  248 ataaa 252  Q
    |||||    
T  4776134 ataaa 4776138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 25059499 - 25059431
Alignment:
Q  39 aatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaa 107  Q
    |||||| ||||||||||||||||||||||||||||| |||||| || | | ||||| | ||||||||||    
T  25059499 aatcaacattagataaaatttgtgttgagttcttttgatgatgtttatgttgatatactaacatatgaa 25059431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 53586545 - 53586583
Alignment:
Q  21 gagagagatgattcagttaatcaatattagataaaattt 59  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  53586545 gagagaggtgattcagttaatcaatattagataaaattt 53586583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 4775959 - 4775997
Alignment:
Q  46 attagataaaatttgtgttgagttcttttaatgatgctt 84  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  4775959 attagacaaaatttgtgttgagttctttcaatgatgctt 4775997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 4110145 - 4110104
Alignment:
Q  211 ttttcttcaagtattttacatacatataagttttattataaa 252  Q
    |||||||||||||||||||||  |||||||||||| ||||||    
T  4110145 ttttcttcaagtattttacatgtatataagttttagtataaa 4110104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 253
Target Start/End: Complemental strand, 23941024 - 23940987
Alignment:
Q  216 ttcaagtattttacatacatataagttttattataaat 253  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  23941024 ttcaagtattttacatgcatataagatttattataaat 23940987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 24917669 - 24917714
Alignment:
Q  21 gagagagatgattcagttaatcaatattagataaaatttgtgttga 66  Q
    ||||||||||||||| ||||||||  || |||||||||||||||||    
T  24917669 gagagagatgattcaattaatcaacgttggataaaatttgtgttga 24917714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 47532736 - 47532772
Alignment:
Q  216 ttcaagtattttacatacatataagttttattataaa 252  Q
    |||||||||||||||||| |||||| |||||||||||    
T  47532736 ttcaagtattttacatacgtataagctttattataaa 47532772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 9 - 290
Target Start/End: Complemental strand, 29231070 - 29230782
Alignment:
Q  9 gatgaacgttgcgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaa 108  Q
    |||||| || ||||||||  |||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||    
T  29231070 gatgaatgtagcgagagatgtgattcagttaatcaacattagataaaatttgtgttgaattcttttaatgatgtttctctcaatatcccaacatatgaaa 29230971  T
Q  109 atgtaa-attgtttatnnnnnnnnntt-----------attttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaaga 196  Q
    |||||| || ||||||         ||           ||||| |||||||||||||||||  ||||||| |||||||||||||||||||||||||||||    
T  29230970 atgtaatatggtttataagaaaactttcaaaaaaaattattttgatcacatgtattattttgaaaaaattataacttttataataatacaataatgaaga 29230871  T
Q  197 gtaatcggtgttaattttcttcaagtattttacatacatataagttttattataaatttttcttaacatattgtatcctaaattttaaaaaatt 290  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     ||||||||||||| ||||||||    
T  29230870 gtaatcaatgttaattttcttcaagtattttacatacatataagttttattataaatttttgttaac-----gtatcctaaatttaaaaaaatt 29230782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 9 - 263
Target Start/End: Complemental strand, 19100041 - 19099774
Alignment:
Q  9 gatgaacgttgcgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaa 108  Q
    |||||||||  |||||||  |||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||    
T  19100041 gatgaacgtaacgagagatgtgattcagttaatcaacattagataaaatttgtgttgagtttttttaatgatgtttctttcgatatcccaacatatgaaa 19099942  T
Q  109 atgtaa-attgtttatnnnnnnnnnt-----------tattttaatcacatgtattattttttaaaaa-ttgtaacttttataataatacaataatgaag 195  Q
    |||||| ||  |||||         |           |||||| |||||||||||||| ||| ||||| ||||||||||| |||||||||||||||||||    
T  19099941 atgtaatataatttataagaaaacttacaaaaaaaagtattttgatcacatgtattatatttaaaaaaattgtaacttttttaataatacaataatgaag 19099842  T
Q  196 agtaatcggtgttaattttcttcaagtattttacatacatataagttttattataaatttttcttaac 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  19099841 agtaatcggtgttaattttcttcaagtattttacatacatataagttttactataaatttttgttaac 19099774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 31113852 - 31113727
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaa-ttgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacat 231  Q
    ||||||| |||||||||||||||||| ||||| |||| ||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||| |||    
T  31113852 ttattttcatcacatgtattatttttaaaaaaattgtgacttttataataagacaataatgaagagtaatcgatgtttattttcttcaagtattttccat 31113753  T
Q  232 acatataagttttattataaattttt 257  Q
    ||| |||||||||| |||||| ||||    
T  31113752 acaaataagttttagtataaaatttt 31113727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 3387431 - 3387512
Alignment:
Q  29 tgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaat 110  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3387431 tgattcacttaatcaacattagataaaatttgtgttgagttcttttaatgatgtttctctcgatatcccaacatatgaaaat 3387512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 32076507 - 32076426
Alignment:
Q  29 tgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaat 110  Q
    ||||||| |||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  32076507 tgattcacttaatcaacattagataaaatttgtgttgaattcttttaatgatgtttctctcgatatcccaacatatgaaaat 32076426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 32076389 - 32076263
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaag--tattttaca 230  Q
    ||||||| |||||||||||||||||| ||||||||| | ||||||||||||| |||||| ||||||||||  |||| ||||||||||||  | |||||||    
T  32076389 ttattttgatcacatgtattatttttaaaaaattgtgatttttataataatataataataaagagtaatcaatgtttattttcttcaagtcttttttaca 32076290  T
Q  231 tacatataagttttattataaattttt 257  Q
     |||||| ||||||| ||||| |||||    
T  32076289 cacatatgagttttagtataatttttt 32076263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 133 - 245
Target Start/End: Complemental strand, 28470180 - 28470067
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggt-gttaattttcttcaagtattttacat 231  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||| ||||| ||||||||||| |||||  |  ||  |||| ||||||||||||||||    
T  28470180 ttattttaatcacatgtattatttttaaaaaattgtgacttttatattaatataataatgaagaataatcaatactttttttttttcaagtattttacat 28470081  T
Q  232 acatataagtttta 245  Q
    |||||||| |||||    
T  28470080 acatataaatttta 28470067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 31113976 - 31113888
Alignment:
Q  21 gagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaa 109  Q
    ||||||| |||||| ||||||||| |||||||||||||||| |||| |||||||||| || ||||||||||||||| ||||||| ||||    
T  31113976 gagagaggtgattcggttaatcaacattagataaaatttgttttgacttcttttaattattcttctctcgatatccaaacatataaaaa 31113888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 135 - 257
Target Start/End: Complemental strand, 16755926 - 16755803
Alignment:
Q  135 attttaatcacatgtattatttttt--aaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacata 232  Q
    ||||| |||||||| ||||||||||  ||||||||||||||||||||||||| || ||||||||||||||  || | ||||||||| |||| | ||| |     
T  16755926 attttgatcacatgcattattttttttaaaaattgtaacttttataataatataacaatgaagagtaatcaatgcttattttcttctagta-tgtacgtg 16755828  T
Q  233 catataagttttattataaattttt 257  Q
    ||||||| ||||| |||||||||||    
T  16755827 catataaattttagtataaattttt 16755803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 39935771 - 39935844
Alignment:
Q  37 ttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaat 110  Q
    |||||||| || ||||||||||||||||| ||||||||||||||| ||||||| |||| |||||||||||||||    
T  39935771 ttaatcaacatcagataaaatttgtgttgtgttcttttaatgatgtttctctcaatattccaacatatgaaaat 39935844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 8802666 - 8802542
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacata 232  Q
    ||||||| ||||||||| |||||||| ||||| ||| | ||||||||||||| ||||||||||||||||   || | ||||| || || ||||||||||     
T  8802666 ttatttttatcacatgttttatttttaaaaaagtgtgaattttataataatataataatgaagagtaataaatgcttattttttttaaatattttacatg 8802567  T
Q  233 catataagttttattataaattttt 257  Q
     |||||||||||| ||||| |||||    
T  8802566 tatataagttttagtataatttttt 8802542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 5836647 - 5836734
Alignment:
Q  20 cgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaa 107  Q
    ||||||||  |||||| |||||||  ||||||||||||||||||||||||||||||||||||||| | | ||||||| ||||| ||||    
T  5836647 cgagagaggagattcaattaatcaccattagataaaatttgtgttgagttcttttaatgatgcttatgttgatatcctaacatctgaa 5836734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 8802779 - 8802709
Alignment:
Q  37 ttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaa 107  Q
    ||||||||||||| | |||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||    
T  8802779 ttaatcaatattaaacaaaatttgtgttgagttcttttgatgatgcttctattgatatcctaacatatgaa 8802709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 8229493 - 8229545
Alignment:
Q  205 tgttaattttcttcaagtattttacatacatataagttttattataaattttt 257  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  8229493 tgtttattttcttcaagtattttacatacatataagttttaatataaattttt 8229545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 26565107 - 26565155
Alignment:
Q  29 tgattcagttaatcaatattagataaaatttgtgttgagttcttttaat 77  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26565107 tgattcagttaatcaatattagataaaatttatgttgagttcttttaat 26565155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 144 - 245
Target Start/End: Complemental strand, 39700861 - 39700761
Alignment:
Q  144 acatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagttt 243  Q
    ||||||||||||||| | |||||  || ||||||||||||| |||||||||||| ||||  || | ||||| ||||||| |||||||| |||||||||||    
T  39700861 acatgtattatttttaataaatttgaa-ttttataataatataataatgaagagcaatcaatgcttatttttttcaagtgttttacatgcatataagttt 39700763  T
Q  244 ta 245  Q
    ||    
T  39700762 ta 39700761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 31210802 - 31210743
Alignment:
Q  51 ataaaatttgtgttgagttcttttaatgatgcttctctcg--atatcccaacatatgaaa 108  Q
    ||||||||||||||| ||||||||||||||| ||||||||  ||||||||||||||||||    
T  31210802 ataaaatttgtgttgtgttcttttaatgatgtttctctcggtatatcccaacatatgaaa 31210743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 34764644 - 34764588
Alignment:
Q  21 gagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaat 77  Q
    ||||||| ||||||| |||||||| |||| |||||||||||||||||||||||||||    
T  34764644 gagagaggtgattcaattaatcaacattaaataaaatttgtgttgagttcttttaat 34764588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 36906863 - 36906930
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaat 201  Q
    ||||||| |||| || ||||||||| |||||||||| ||||||||||||||| ||||||||||||||||    
T  36906863 ttattttgatcatatatattatttt-taaaaattgtgacttttataataatagaataatgaagagtaat 36906930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 205 - 305
Target Start/End: Complemental strand, 2627877 - 2627765
Alignment:
Q  205 tgttaattttcttcaagtattttacatacatataagttttattat-aaatttttcttaa-----------catattgtatcctaaattttaaaaaatttg 292  Q
    |||| |||||||| ||||||||||||||||||||||||||| ||| |||||||| ||||           | ||| ||||||||||||||||||||||||    
T  2627877 tgtttattttcttgaagtattttacatacatataagttttagtataaaatttttgttaacgtatcttaaccgtatcgtatcctaaattttaaaaaatttg 2627778  T
Q  293 tatatccacgtac 305  Q
    | |||||||||||    
T  2627777 tgtatccacgtac 2627765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 8229435 - 8229489
Alignment:
Q  23 gagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaat 77  Q
    ||||| |||||| ||||||||| |||||||||||||||||||||||| |||||||    
T  8229435 gagaggtgattcggttaatcaacattagataaaatttgtgttgagtttttttaat 8229489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 27925683 - 27925729
Alignment:
Q  20 cgagagagatgattcagttaatcaatattagataaaatttgtgttga 66  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||    
T  27925683 cgagagagatgattcaattaatcaacattagataaaatttgtgttga 27925729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 2627936 - 2627881
Alignment:
Q  22 agagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaat 77  Q
    |||||| ||||||| |||||||| |||| ||||||||||||||||||| |||||||    
T  2627936 agagaggtgattcaattaatcaacattaaataaaatttgtgttgagttattttaat 2627881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 200
Target Start/End: Complemental strand, 31210707 - 31210640
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaa 200  Q
    ||||||| |||||||||||| ||||  ||| ||| | ||||||||||||||| |||||||||||||||    
T  31210707 ttattttgatcacatgtatttttttcaaaacattttgacttttataataatataataatgaagagtaa 31210640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 27925821 - 27925863
Alignment:
Q  210 attttcttcaagtattttacatacatataagttttattataaa 252  Q
    ||||| |||||||||||||||||||||||||||||||| ||||    
T  27925821 atttttttcaagtattttacatacatataagttttattgtaaa 27925863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 257
Target Start/End: Original strand, 7057327 - 7057399
Alignment:
Q  186 aataatgaagagtaatcggtgttaattttcttcaa-gtattttacatacatataagttttattataaattttt 257  Q
    ||||| |||||||||||  || | ||||||||||| ||||||||||||||||||| ||||| |||||| ||||    
T  7057327 aataaggaagagtaatcaatgcttattttcttcaaagtattttacatacatataaattttagtataaaatttt 7057399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 7732556 - 7732607
Alignment:
Q  216 ttcaagtattttacatacatataagttttattataaatttttcttaacatat 267  Q
    |||||||||||||||| ||||||| ||||| ||||||| ||| |||||||||    
T  7732556 ttcaagtattttacatgcatataaattttagtataaatattttttaacatat 7732607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 252
Target Start/End: Original strand, 39935883 - 39936001
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacata 232  Q
    ||||||| ||| || || |||||||| | ||||||| ||||||||||||||| ||||||   ||||||||  |||| |||| |||||||| |||| ||      
T  39935883 ttattttgatcgcaagtgttatttttaagaaattgtgacttttataataatataataatagggagtaatcaatgtttatttccttcaagt-tttttcact 39935981  T
Q  233 catataagttttattataaa 252  Q
    ||||| ||||||| ||||||    
T  39935982 catatgagttttagtataaa 39936001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 36906953 - 36907019
Alignment:
Q  186 aataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagttttattataaa 252  Q
    |||||||||||||||| | |  | |||||||||||| ||||||||| ||||||| ||||| ||||||    
T  36906953 aataatgaagagtaattgatccttattttcttcaagaattttacatgcatataaattttagtataaa 36907019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 26565165 - 26565218
Alignment:
Q  211 ttttcttcaagtattttacatacatataagttttatta-taaatttttcttaac 263  Q
    ||||| ||||||||||||||||||| ||||||||| || ||||||||| |||||    
T  26565165 ttttcatcaagtattttacatacatttaagttttagtattaaatttttgttaac 26565218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 41368761 - 41368806
Alignment:
Q  30 gattcagttaatcaatattagataaaatttgtgttgagttctttta 75  Q
    ||||||||||||||| |||| |||||||||  ||||||||||||||    
T  41368761 gattcagttaatcaacattaaataaaatttaagttgagttctttta 41368806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 7e-65; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 29 - 263
Target Start/End: Complemental strand, 25294608 - 25294362
Alignment:
Q  29 tgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaatgtaa-attgtttatnnnn 127  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||| |||| |||||| |||||||||||| || ||||||        
T  25294608 tgattcagttaatcaacattagataaaatttgtgttgaattcttttaatgatgtttctctcaatattccaacacatgaaaatgtaatatggtttataaga 25294509  T
Q  128 nnnnntt-----------attttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttct 216  Q
         ||           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  25294508 aaactttcaaaaaaaatcattttgatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcaatgttaattttct 25294409  T
Q  217 tcaagtattttacatacatataagttttattataaatttttcttaac 263  Q
    | ||||||||||||||||||||||||||||||||||||||| |||||    
T  25294408 tgaagtattttacatacatataagttttattataaatttttgttaac 25294362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 263
Target Start/End: Original strand, 41827804 - 41828069
Alignment:
Q  9 gatgaacgttgcgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaa 108  Q
    ||||||||| |||||| |  |||||||||||||||| |||||||||||||||||||| | ||||||||||||| ||||||| |||||||| |||||||||    
T  41827804 gatgaacgtagcgagaaatgtgattcagttaatcaacattagataaaatttgtgttgggatcttttaatgatgtttctctcaatatcccagcatatgaaa 41827903  T
Q  109 atgtaa-attgtttatnnnnnnnnntt-----------attttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaaga 196  Q
    |||||| || ||||||         ||           ||||| ||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  41827904 atgtaatatggtttataagaaaactttcaaaaaatattattttgatcacatgtattatttttttaaaattgtaacttttattata-tacaataatgaaga 41828002  T
Q  197 gtaatcggtgttaattttcttcaagtattttacatacatataagttttattataaatttttcttaac 263  Q
    |||||   || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41828003 gtaattaatgctaattttcttcaagtattttacatacatataagttttattataaatttttattaac 41828069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 144 - 263
Target Start/End: Complemental strand, 31513472 - 31513353
Alignment:
Q  144 acatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagttt 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  31513472 acatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcaatgttaattttcttcaagtattttacatacatataagttt 31513373  T
Q  244 tattataaatttttcttaac 263  Q
    |||||||||||||| |||||    
T  31513372 tattataaatttttgttaac 31513353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 160 - 305
Target Start/End: Original strand, 40694143 - 40694285
Alignment:
Q  160 aaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagttttattataaatttttct 259  Q
    ||||||||||| |||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||| |||||||||| ||||||||||||| |    
T  40694143 aaaaattgtaaattttataataatacaataatgaagagtaatcaatattaattttcttcaagtattttacataaatataagtttcattataaatttttgt 40694242  T
Q  260 taacatattgtatcctaaatttt--aaaaaatttgtatatccacgtac 305  Q
    ||||     ||||||||||||||  ||||||||||| ||||| |||||    
T  40694243 taac-----gtatcctaaatttttaaaaaaatttgtgtatccgcgtac 40694285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 4966827 - 4966916
Alignment:
Q  21 gagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaat 110  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  4966827 gagagagatgattcagttaatcaacattaaataaaatttgtgttgagttcttttaatgatgtttctctcaatatcccaacatatgaaaat 4966916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 4973055 - 4972966
Alignment:
Q  21 gagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaat 110  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||    
T  4973055 gagagagatgattcagttaatcaacattagataaaatttgtgttgagttcttttaatgatgtttctctcaatatcccaacatataaaaat 4972966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 141 - 263
Target Start/End: Original strand, 17116526 - 17116652
Alignment:
Q  141 atcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttac----atacata 236  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||   | ||||||||||| |||||||||||    |||||||    
T  17116526 atcacatatattatttttaaaaaattgtaacttttataataatacaataatgaagagtaattaatattaattttctttaagtattttacatatatacata 17116625  T
Q  237 taagttttattataaatttttcttaac 263  Q
    ||||||| ||||||||||||| |||||    
T  17116626 taagtttaattataaatttttgttaac 17116652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 29 - 292
Target Start/End: Complemental strand, 38682888 - 38682618
Alignment:
Q  29 tgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaatgtaa-attgtttatnnnn 127  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||| || ||| |||||||||||||||||||| | ||||| ||| || ||||||        
T  38682888 tgattcagctaatcaacattagataaaatttgtgttgagttcttttcattatgtttctctcgatatcccaacatttaaaaatataatatggtttataaga 38682789  T
Q  128 nnnnntta-----------ttttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttct 216  Q
         |||           |||| |||| || ||||||||||||||| |||| || |||||||||| | ||| |||||||||||||  |||| |||||||    
T  38682788 aaactttacattttttatattttgatcatatttattattttttaaaa-ttgtgacatttataataagataattatgaagagtaatcaatgtttattttct 38682690  T
Q  217 tcaagtattttacatacatataagttttattata-aatttttcttaacatattgtatcctaaattttaaaaaatttg 292  Q
    |||||||||||||||| || |||||||||||||| ||||||| |||||     ||||||||||||| ||||||||||    
T  38682689 tcaagtattttacatatatttaagttttattatagaatttttgttaac-----gtatcctaaatttaaaaaaatttg 38682618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 17116380 - 17116485
Alignment:
Q  9 gatgaacgttgcgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaa 108  Q
    |||||||||  |||||||  ||||| |||||||||| |||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||     
T  17116380 gatgaacgtaacgagagatgtgatttagttaatcaacattagataaaatttgtgttgagttcttttaattatgtttctctcaatatcccaacatatgaat 17116479  T
Q  109 atgtaa 114  Q
    ||||||    
T  17116480 atgtaa 17116485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 40032785 - 40032866
Alignment:
Q  29 tgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaat 110  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  40032785 tgattcagttaatcaacattatataaaatttgtgttgagttcttttaatgatgtttttctcgatatcccaacatatgaaaat 40032866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 13643915 - 13644003
Alignment:
Q  22 agagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaat 110  Q
    |||||| ||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  13643915 agagaggtgattcaattattcaacattagataaaatttgtgttgagttcttttaatgatgcttatcttgatatcccaacatatgaaaat 13644003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 14287289 - 14287413
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacata 232  Q
    ||||||| |||||||||||||||||| ||||||||| ||||||||||| | | |||||| ||||||||||  |||  |||||||||||||||||||||||    
T  14287289 ttattttcatcacatgtattatttttaaaaaattgtgacttttataattagataataataaagagtaatcaatgtatattttcttcaagtattttacata 14287388  T
Q  233 catataagttttattataaattttt 257  Q
    || |||||||||  |||||| ||||    
T  14287389 caaataagttttggtataaaatttt 14287413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 50726782 - 50726869
Alignment:
Q  9 gatgaacgttgcgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcc 96  Q
    ||||||||| ||||||||  |||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||| ||||||    
T  50726782 gatgaacgtagcgagagatgtgattcagttaatcaacattagataaaatttgtgttgaattcttttaatgatgtttctctcaatatcc 50726869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 133 - 252
Target Start/End: Original strand, 271240 - 271359
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacata 232  Q
    ||||||| || ||||||||||||||||  ||||| | ||||||| | ||||| ||||||||||||||||   |||| |||||||||||||| |||||||     
T  271240 ttattttgataacatgtattattttttttaaattatgacttttagattaatataataatgaagagtaattcatgtttattttcttcaagtaatttacatg 271339  T
Q  233 catataagttttattataaa 252  Q
     |||||||||||| ||||||    
T  271340 aatataagttttaatataaa 271359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 13558626 - 13558682
Alignment:
Q  21 gagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaat 77  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  13558626 gagagagatgattcagttaatcaacattagataaaatgtgtgttgagttcttttaat 13558682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 14287161 - 14287245
Alignment:
Q  21 gagagagatgattcagttaatcaat-attagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatat 104  Q
    ||||||| ||||||| ||||||||  |||||||||||| ||||||||||||||||||| || ||||||||||||||| |||||||    
T  14287161 gagagaggtgattcaattaatcaaacattagataaaatatgtgttgagttcttttaattattcttctctcgatatccaaacatat 14287245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 133 - 237
Target Start/End: Original strand, 13644039 - 13644140
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacata 232  Q
    |||||||||||||||||||||||||||| ||||||  ||||||||||||||| || |||   |||||||   | || ||||||||||||||||||||||     
T  13644039 ttattttaatcacatgtattattttttataaattgcgacttttataataatataacaat---gagtaataaatatttattttcttcaagtattttacatg 13644135  T
Q  233 catat 237  Q
    |||||    
T  13644136 catat 13644140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 40032900 - 40032968
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaat 201  Q
    ||||||| | ||||||||||||||| |||||||||| ||||||||||||||  ||||||||||||||||    
T  40032900 ttattttgagcacatgtattattttgtaaaaattgttacttttataataatttaataatgaagagtaat 40032968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 172 - 263
Target Start/End: Original strand, 4966994 - 4967085
Alignment:
Q  172 ttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagttttattataaatttttcttaac 263  Q
    ||||||||||||| ||||| |||||||| |   |||| ||||| ||||||| |||||||||||||||||||||| ||||| ||||| |||||    
T  4966994 ttttataataataaaataacgaagagtattaaatgtttatttttttcaagtgttttacatacatataagttttagtataatttttttttaac 4967085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 49899480 - 49899547
Alignment:
Q  186 aataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagttttattataaat 253  Q
    |||||||||||||||||  |||| |||||||| ||||||||||| ||||||||||||||| |||||||    
T  49899480 aataatgaagagtaatcaatgtttattttctttaagtattttacttacatataagttttagtataaat 49899547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 4972891 - 4972809
Alignment:
Q  170 acttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagttttattataaa 252  Q
    ||||||||||||||| ||||| |||||||| |   |||| ||||| | |||||||||||||||||||||||||||| ||||||    
T  4972891 acttttataataataaaataacgaagagtattaaatgtttattttttccaagtattttacatacatataagttttagtataaa 4972809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 253
Target Start/End: Complemental strand, 22791003 - 22790887
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacata 232  Q
    ||||||| |||||||||||||||||||  ||||||| |||||||| || ||| | || ||||||||||||  ||    |||| || |||||||||||||     
T  22791003 ttattttgatcacatgtattattttttgtaaattgtgacttttatgattatatagtattgaagagtaatcaatg----ttttttttaagtattttacatg 22790908  T
Q  233 catataagttttattataaat 253  Q
    ||||||| ||||| |||||||    
T  22790907 catataaattttagtataaat 22790887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 31513560 - 31513514
Alignment:
Q  68 ttcttttaatgatgcttctctcgatatcccaacatatgaaaatgtaa 114  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||    
T  31513560 ttcttttaatgatgtttctctcaatatcccaacatatgaaaatgtaa 31513514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 51898897 - 51898828
Alignment:
Q  37 ttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaa 107  Q
    |||||||| |||||| |||| |||| ||||||||||||||||||| |||| | ||||||||||||||||||    
T  51898897 ttaatcaacattagacaaaaattgt-ttgagttcttttaatgatgtttctattgatatcccaacatatgaa 51898828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 16123081 - 16123160
Alignment:
Q  172 ttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagttttattataaa 252  Q
    |||||||||| || |||||| ||||||||||  |||| |||| ||||||||||||||||| ||||||||| ||| ||||||    
T  16123081 ttttataatagtataataatcaagagtaatcaatgtttattt-cttcaagtattttacatgcatataagtgttagtataaa 16123160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 245
Target Start/End: Original strand, 31183717 - 31183829
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacata 232  Q
    ||||||| || ||||||||||||||||  |||| || |||||||| || ||| | || ||||||||||||  ||||  |||| || |||||||||||||     
T  31183717 ttattttgattacatgtattattttttgtaaatggtgacttttatgattatatagtattgaagagtaatcaatgttttttttttttaagtattttacatg 31183816  T
Q  233 catataagtttta 245  Q
    ||||||| |||||    
T  31183817 catataaatttta 31183829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 11767563 - 11767516
Alignment:
Q  205 tgttaattttcttcaagtattttacatacatataagttttattataaa 252  Q
    |||| ||||||||||||||||||||||||||||| |||||| ||||||    
T  11767563 tgtttattttcttcaagtattttacatacatatatgttttagtataaa 11767516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 290
Target Start/End: Original strand, 35160449 - 35160524
Alignment:
Q  216 ttcaagtattttacatacatataagttttattataaa-tttttcttaacatattgtatcctaaattttaaaaaatt 290  Q
    ||||||||||||||||   |||||||||||||||||| ||||| || || |||  |||||||||||||||||||||    
T  35160449 ttcaagtattttacatgtttataagttttattataaattttttgtttacgtatcttatcctaaattttaaaaaatt 35160524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 11767613 - 11767567
Alignment:
Q  29 tgattcagttaatcaatattagataaaatttgtgttgagttcttttaat 77  Q
    |||||||||||||||| |||||||||||||  |||||||||||||||||    
T  11767613 tgattcagttaatcaacattagataaaatt--tgttgagttcttttaat 11767567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 40694083 - 40694120
Alignment:
Q  31 attcagttaatcaatattagataaaatttgtgttgagt 68  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  40694083 attcagttaatcaatattagataaaatttatgttgagt 40694120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 245
Target Start/End: Original strand, 10443776 - 10443811
Alignment:
Q  210 attttcttcaagtattttacatacatataagtttta 245  Q
    ||||||||||||||||||| ||||||||||||||||    
T  10443776 attttcttcaagtattttatatacatataagtttta 10443811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 9 - 263
Target Start/End: Complemental strand, 46979345 - 46979080
Alignment:
Q  9 gatgaacgttgcgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaa 108  Q
    ||||||||| ||||||||| ||||| |||||||||| || | |||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||    
T  46979345 gatgaacgtagcgagagaggtgatttagttaatcaacatcacataaaatttgcgttgagttcttttaatgatgtttctctcgatatcgcaacatatgaaa 46979246  T
Q  109 atgtaa-attgtttatnnnnnnnnntt----------attttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagag 197  Q
    |||||| || ||||||         ||          ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46979245 atgtaatatggtttataagaaaactttcaaaaaaattattttgatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagag 46979146  T
Q  198 taatcggtgttaattttcttcaagtattttacatacatataagttttattataaatttttcttaac 263  Q
    ||||  |||||| |||||||| ||||||||||||||| |||| ||||||||||||||||| |||||    
T  46979145 taattagtgttacttttcttctagtattttacatacagataaattttattataaatttttgttaac 46979080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 154 - 263
Target Start/End: Complemental strand, 7629023 - 7628916
Alignment:
Q  154 ttttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagttttattataaat 253  Q
    ||||||||||  ||||||||||||||||||| |||||||||||||||||  |||||||||||||||||| |||||||||||||||||||| |||||||||    
T  7629023 ttttttaaaa--tgtaacttttataataatataataatgaagagtaatcaatgttaattttcttcaagtgttttacatacatataagtttaattataaat 7628926  T
Q  254 ttttcttaac 263  Q
    |||| |||||    
T  7628925 ttttgttaac 7628916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 20369127 - 20369004
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaa-attgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacat 231  Q
    |||||||||||||||||||||||| |||||| ||||| ||||||||||| ||| |||||| ||||||||||  || | ||||||||||||||||||  ||    
T  20369127 ttattttaatcacatgtattatttcttaaaatattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtatttt--at 20369030  T
Q  232 acatataagttttattataaattttt 257  Q
    ||| |||||||||| |||||| ||||    
T  20369029 acacataagttttagtataaaatttt 20369004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 51240947 - 51240867
Alignment:
Q  29 tgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaat 110  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| | |||| || |||||||||||||||||||||||||    
T  51240947 tgattcaattaatcaatattagataaaatttgtgttgagttctttttacgatg-ttttctcgatatcccaacatatgaaaat 51240867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 133 - 245
Target Start/End: Complemental strand, 52695453 - 52695340
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtg-ttaattttcttcaagtattttacat 231  Q
    ||||||| ||||||| |||||||||  ||||||||| || |||||||||||| |||||| ||||||||||  || ||| ||||||||||||||||||||     
T  52695453 ttattttgatcacatctattattttaaaaaaattgtgacatttataataatataataataaagagtaatcaatgcttatttttcttcaagtattttacac 52695354  T
Q  232 acatataagtttta 245  Q
    |||||| |||||||    
T  52695353 acatatgagtttta 52695340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 29324350 - 29324472
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacata 232  Q
    ||||||| |||||||||||||||||  ||||||||| ||||| ||||||||  |||||||| || ||||   |||| ||||| ||||||||||||||||     
T  29324350 ttattttgatcacatgtattatttta-aaaaattgtgacttt-ataataatttaataatgatgactaattaatgtttatttttttcaagtattttacatg 29324447  T
Q  233 catataagttttattataaattttt 257  Q
    ||||||||||| ||||| |||||||    
T  29324448 catataagtttcattatgaattttt 29324472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 7629179 - 7629084
Alignment:
Q  19 gcgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaatgtaa 114  Q
    ||||||||  |||||||||||||||| | |||||||||||||  |||| ||||| |||||||| ||||| | |||||||||||||| |||||||||    
T  7629179 gcgagagatgtgattcagttaatcaacaatagataaaatttgcattgatttcttgtaatgatgtttctcccaatatcccaacatattaaaatgtaa 7629084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 2119136 - 2119237
Alignment:
Q  155 tttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagttttattataaatt 254  Q
    |||||||||||| | ||||||||||||||| ||||||||||| | |||  |||| |||||||| ||||||||| ||| |||||||| |||| ||||||||    
T  2119136 tttttaaaaatt-tgacttttataataataaaataatgaagattgatcaatgtttattttctttaagtattttgcatccatataagctttagtataaatt 2119234  T
Q  255 ttt 257  Q
    |||    
T  2119235 ttt 2119237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 39615026 - 39614936
Alignment:
Q  20 cgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaat 110  Q
    ||||||| |||||| | ||||||||  |||||||||||||||| |||||||||||||| ||| || ||||| | |||||||||||||||||    
T  39615026 cgagagatatgatttaattaatcaacgttagataaaatttgtgatgagttcttttaataatgtttttctcgttctcccaacatatgaaaat 39614936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 45472740 - 45472797
Alignment:
Q  20 cgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaat 77  Q
    |||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||    
T  45472740 cgagagaggtgattcagttaatcaacattagataaaatttgtgttgggttcttttaat 45472797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 141 - 246
Target Start/End: Original strand, 32835481 - 32835585
Alignment:
Q  141 atcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataag 240  Q
    ||||||| ||| |||||||  ||||| | ||||||||||||||| |||||| |||| |||||  ||||  ||||||| ||||||||||||||||||||||    
T  32835481 atcacatatataattttttttaaattatgacttttataataatataataataaagattaatccatgttt-ttttcttgaagtattttacatacatataag 32835579  T
Q  241 ttttat 246  Q
    | ||||    
T  32835580 tgttat 32835585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 38489708 - 38489651
Alignment:
Q  20 cgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaat 77  Q
    |||||||| |||||||||||||||| ||||||||||||| ||||||| ||||||||||    
T  38489708 cgagagagttgattcagttaatcaacattagataaaattggtgttgaattcttttaat 38489651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 29324233 - 29324329
Alignment:
Q  29 tgattcagttaatcaatattagataaaatttgtgttgagttctttt-aatgatgcttctctcgatatcccaacatatgaaaatgtaa-attgtttat 123  Q
    ||||| |||||||  | |||||||||||||| |||||| || |||| ||||||| ||||||||||||||||||||||| |||| ||| |||||||||    
T  29324233 tgattaagttaatacacattagataaaatttatgttgatttttttttaatgatgtttctctcgatatcccaacatatgtaaatataatattgtttat 29324329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 45472801 - 45472848
Alignment:
Q  205 tgttaattttcttcaagtattttacatacatataagttttattataaa 252  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||    
T  45472801 tgtttattttcttcaagtattttacatacatataagttttaatataaa 45472848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 17063934 - 17063888
Alignment:
Q  31 attcagttaatcaatattagataaaatttgtgttgagttcttttaat 77  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  17063934 attcagttaatcaacattagataaaatttgtgttgagttcctttaat 17063888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 53530682 - 53530616
Alignment:
Q  20 cgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttct 86  Q
    ||||||||  |||||| ||||||||||||| | ||||||||||||||||||||||||| || |||||    
T  53530682 cgagagagtagattcaattaatcaatattaaacaaaatttgtgttgagttcttttaataatacttct 53530616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 35296684 - 35296764
Alignment:
Q  210 attttcttcaagtattttacatacatataagttttattataaa--tttttcttaacatattgtatcctaaattttaaaaaa 288  Q
    |||||||||||||||||||||||||| ||| ||||| ||||||  ||||| ||| | ||| ||||||||||||| ||||||    
T  35296684 attttcttcaagtattttacatacatgtaaattttagtataaatttttttgttagcgtatcgtatcctaaatttaaaaaaa 35296764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 286
Target Start/End: Complemental strand, 39614859 - 39614759
Alignment:
Q  189 aatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagttttattataa-atttttcttaac--atattgtatcctaaattttaaa 285  Q
    ||||||||||||||  || | ||||||||||| |||||||||||||||||| ||||| |||||  ||||| |||||  |||||||||  |||||||||||    
T  39614859 aatgaagagtaatcaatgcttattttcttcaaatattttacatacatataaattttaatataatttttttgttaacatatattgtattttaaattttaaa 39614760  T
Q  286 a 286  Q
    |    
T  39614759 a 39614759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 36504964 - 36505020
Alignment:
Q  21 gagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaat 77  Q
    ||||||| |||||| | || |||| ||||||||||||||||||||||||||||||||    
T  36504964 gagagaggtgattcggatattcaacattagataaaatttgtgttgagttcttttaat 36505020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 36505024 - 36505076
Alignment:
Q  205 tgttaattttcttcaagtattttacatacatataagttttattataaattttt 257  Q
    |||| ||||||||| ||||||||||||| |||||||||||| |||||||||||    
T  36505024 tgtttattttcttcgagtattttacatatatataagttttagtataaattttt 36505076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 53530547 - 53530484
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagag 197  Q
    ||||||| |||||||||||||||||  ||||||||| ||||||||||||||| |||||| |||||    
T  53530547 ttattttgatcacatgtattattttc-aaaaattgtgacttttataataatataataataaagag 53530484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 20178824 - 20178777
Alignment:
Q  210 attttcttcaagtattttacatacatataagttttattataaattttt 257  Q
    ||||| ||||||||||||||||| |||||||||||| |||||||||||    
T  20178824 atttttttcaagtattttacatatatataagttttaatataaattttt 20178777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 40614979 - 40615036
Alignment:
Q  37 ttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatat 94  Q
    |||||||| |||| ||||||||||||||| ||||||||||||||| || |||| ||||    
T  40614979 ttaatcaacattatataaaatttgtgttgcgttcttttaatgatgtttatctcaatat 40615036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 40615116 - 40615184
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaat 201  Q
    ||||||| |||||| ||||||||||| | ||||||  ||||||||||||||| |||||| | |||||||    
T  40615116 ttattttgatcacaagtattatttttaagaaattgcgacttttataataatataataataatgagtaat 40615184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 21853837 - 21853916
Alignment:
Q  28 atgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaa 107  Q
    |||||||| | |||||| |||| ||||||||||| | ||||||||||| |||||| | | | ||||||| ||||||||||    
T  21853837 atgattcaatcaatcaacattaaataaaatttgtttagagttcttttattgatgcatttgttgatatcctaacatatgaa 21853916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 27163874 - 27163827
Alignment:
Q  210 attttcttcaagtattttacatacatataagttttattataaattttt 257  Q
    |||||||||||| |||||||||| |||||||||||| |||||| ||||    
T  27163874 attttcttcaagaattttacatatatataagttttagtataaaatttt 27163827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 31518965 - 31519011
Alignment:
Q  216 ttcaagtattttacatacatataagttttattataaatttttcttaa 262  Q
    |||||||||||||||| ||| ||||||||||||||| ||||| ||||    
T  31518965 ttcaagtattttacatgcatttaagttttattataattttttattaa 31519011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 35053679 - 35053610
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatc 202  Q
    ||||||| || ||||||||||||| ||||||||| | ||||||| ||||||| ||| |  ||||||||||    
T  35053679 ttattttgataacatgtattatttcttaaaaattatgacttttacaataatataattacaaagagtaatc 35053610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 51240798 - 51240705
Alignment:
Q  160 aaaaattgtaacttttataataatacaa-taatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagttttattataaa 252  Q
    |||| |||| ||||||||||||||| || |||| |||| ||||   || | ||| ||||||||||||||||| |||||| ||||||| ||||||    
T  51240798 aaaatttgtgacttttataataatataaataataaagaataataaatgcttattatcttcaagtattttacacacatatgagttttagtataaa 51240705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 12736793 - 12736841
Alignment:
Q  219 aagtattttacatacatataagttttattataaatttttcttaacatat 267  Q
    |||||||||||| |||||||||||||| |||||| |||| ||| |||||    
T  12736793 aagtattttacaaacatataagttttagtataaaattttgttaccatat 12736841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 45472877 - 45472925
Alignment:
Q  269 gtatcctaaattttaaaaaatttgtatatccacgtactcctatcgtatc 317  Q
    |||||||||||||||||||||| | |||||| ||||| | |||||||||    
T  45472877 gtatcctaaattttaaaaaattcgcatatccgcgtacccgtatcgtatc 45472925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 52203785 - 52203716
Alignment:
Q  186 aataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagttttattataaattttt 257  Q
    |||||||||| |||||  ||| | ||||||||||||| ||||||||  |||||||||||| |||||| ||||    
T  52203785 aataatgaagggtaattagtgcttattttcttcaagtgttttacat--atataagttttagtataaaatttt 52203716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 42040438 - 42040184
Alignment:
Q  20 cgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaatgtaa-attg 118  Q
    |||||||  |||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| ||      
T  42040438 cgagagatgtgattcagttaatcaacattagataaaatttgtgttgagttcttttattgatgtttctctcaatatcccaacatatgaaaatgtaatatgc 42040339  T
Q  119 tttatnnnnnnnnnt-----------tattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgt 207  Q
    |||||         |           |||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||  |||    
T  42040338 tttataagaaaactttcaaaatgaattattttgatcacatgtattattttctaaaaattataacttttataataatacaataatgaagagtaatcaatgt 42040239  T
Q  208 taattttcttcaagtattttacatacatataagttttattataaatttttcttaac 263  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  42040238 taattttcttcaagta-tttacatacatataagttttattataaatttttgttaac 42040184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 29 - 257
Target Start/End: Complemental strand, 45648196 - 45647961
Alignment:
Q  29 tgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaatgtaaattg-tttatnnnn 127  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||| |||||||||  || |||||        
T  45648196 tgattcagttaatcaacattagataaaatttgtcttgagttcttttaatgatgtttctcttgatatcccaacatataaaaatgtaatatgatttataaga 45648097  T
Q  128 nnnnntt------attttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaag 221  Q
         ||      |  || ||| |||||||||||||| ||||||| |||||||| |||||||||||||||||| ||||||| || |||||||||||||||    
T  45648096 aaattttcaaaaaaaattgatcgcatgtattatttttaaaaaattataacttttttaataatacaataatgaacagtaatcagttttaattttcttcaag 45647997  T
Q  222 tattttacatacatataagttttattataaattttt 257  Q
    ||||||||||| | ||||||||||||||||||||||    
T  45647996 tattttacatatagataagttttattataaattttt 45647961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 47843742 - 47843504
Alignment:
Q  29 tgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaatgtaa-attgtttatnnnn 127  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||| || ||||||        
T  47843742 tgattcagttaatcaacattagataaaatttgtgttgagttcttttaatgatgtttctcttgatatcccaacatatgaaaatataatatggtttataaga 47843643  T
Q  128 nnnnntta-------------ttttaatcacatgtattattttttaaaaa-ttgtaacttttataataatacaataatgaagagtaatcggtgttaattt 213  Q
         |||             |||| |||||||||||||||| | ||||| |||| |||||||||||| || |||||||||| ||||||  |||| ||||    
T  47843642 aaactttacatttttttttaattttgatcacatgtattatttataaaaaaattgtgacttttataatagtataataatgaagggtaatcaatgtttattt 47843543  T
Q  214 tcttcaagtattttacatacatataagttttattataaa 252  Q
    |||||||||||||||||||||||||||||||||||||||    
T  47843542 tcttcaagtattttacatacatataagttttattataaa 47843504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 45492312 - 45492562
Alignment:
Q  21 gagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaac--atatgaaaatgtaa-att 117  Q
    ||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||| || ||||||||||||||| |||  |||||||| | ||| ||     
T  45492312 gagagaggtgattcagttaatcaacattagataaaatatgtgttgagttcttttaattattcttctctcgatatccaaacatatatgaaagtataatatg 45492411  T
Q  118 gtttatnnnnnnnnntt-----------attttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtg 206  Q
    ||||||         ||           ||||| |||||||||||||||||| ||||||| | ||||||||||||| | |||||||||||||||||  ||    
T  45492412 gtttataagaaaaactttacatttttttattttcatcacatgtattatttttaaaaaattatgacttttataataagataataatgaagagtaatcaatg 45492511  T
Q  207 ttaattttcttcaagtattttacatacatataagttttattataaattttt 257  Q
    |  ||||||||||||||||||||||||| |||||||||  |||||||||||    
T  45492512 tatattttcttcaagtattttacatacaaataagttttggtataaattttt 45492562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 42509313 - 42509399
Alignment:
Q  22 agagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaa 108  Q
    ||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42509313 agagagatgtttcaattaatcaacattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaa 42509399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 54 - 252
Target Start/End: Original strand, 43728101 - 43728311
Alignment:
Q  54 aaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaatgtaa-attgtttatnnnnnnnnn-----------ttattttaa 141  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| || ||||||                    ||||||| |    
T  43728101 aaatttgtgttgagtttttttaatgatgcttctctcgatatcccaacatatgaaaatataatatggtttataaaaaaaaactttacattttttattttga 43728200  T
Q  142 tcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagt 241  Q
    ||||||||||||||||| |||||| |  ||||||||||||||| |||||| |||||||||| ||||| |||||||| |||||||| |||||||||||||     
T  43728201 tcacatgtattatttttcaaaaatcgcgacttttataataatataataattaagagtaatcagtgtttattttctttaagtatttcacatacatataaga 43728300  T
Q  242 tttattataaa 252  Q
    |||| ||||||    
T  43728301 tttagtataaa 43728311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 22542792 - 22542669
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacata 232  Q
    ||||||| || | ||||||||||||| ||||||||| |||||||||| |||| |||||||||||||||||  |||| ||||||||||||||||||| |||    
T  22542792 ttattttgattagatgtattatttttaaaaaattgtgacttttataagaatataataatgaagagtaatcaatgtttattttcttcaagtattttatata 22542693  T
Q  233 catataagttttattataaattttt 257  Q
    ||| |||||||||||||| ||||||    
T  22542692 cat-taagttttattatatattttt 22542669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 2185598 - 2185473
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagta-ttttacat 231  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||| | | |||||||||||||||||  |||| |||||||||||||| ||||||||    
T  2185598 ttattttcatcacatgtattattttttaaaaattgtgacttttataattagataataatgaagagtaatcaatgtttattttcttcaagtatttttacat 2185499  T
Q  232 acatataagttttattataaattttt 257  Q
    ||| ||| |||||  |||||| ||||    
T  2185498 acaaatatgttttggtataaaatttt 2185473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 2185727 - 2185638
Alignment:
Q  21 gagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaat 110  Q
    ||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| || ||||| ||||||||| |||||||||||||    
T  2185727 gagagagatgattcatttaatcaacatttgataaaatttgtgttgagttcttttaattattcttctgtcgatatccaaacatatgaaaat 2185638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 25310971 - 25310899
Alignment:
Q  38 taatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaat 110  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  25310971 taatcaacattagataaaatttgtgttgagttcttttaacgatgcttctctcaatatcccaacatatgaaaat 25310899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 133 - 238
Target Start/End: Complemental strand, 3751351 - 3751247
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacata 232  Q
    ||||||| || ||||||||| ||| |||||| |||| ||||||||||||||| ||||||||||| |||||  || | |||||||||||||||||||||||    
T  3751351 ttattttgattacatgtattttttcttaaaa-ttgtgacttttataataatataataatgaagaataatcaatgattattttcttcaagtattttacata 3751253  T
Q  233 catata 238  Q
    ||||||    
T  3751252 catata 3751247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 25482598 - 25482505
Alignment:
Q  9 gatgaacgttgcgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacat 102  Q
    ||||| ||| ||||||||| ||| |||||||||||| |||||||||||| | ||||||||||||||||||||  ||||||| |||| |||||||    
T  25482598 gatgatcgtagcgagagaggtgactcagttaatcaacattagataaaatatatgttgagttcttttaatgatatttctctcaatattccaacat 25482505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 3751477 - 3751381
Alignment:
Q  20 cgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaac--atatgaaaatgtaa 114  Q
    |||||||| |||||||||||||||| |||| ||||||||| ||||||||  ||||||||||||||||||| || ||| |||  |||||||||| |||    
T  3751477 cgagagaggtgattcagttaatcaacattaaataaaatttatgttgagtgtttttaatgatgcttctctcaatttcctaacatatatgaaaatataa 3751381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 40837276 - 40837329
Alignment:
Q  205 tgttaattttcttcaagtatttt-acatacatataagttttattataaattttt 257  Q
    |||| |||||||||||||||||| |||||||||||||||||| |||||||||||    
T  40837276 tgtttattttcttcaagtatttttacatacatataagttttagtataaattttt 40837329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 45804985 - 45805037
Alignment:
Q  20 cgagagagatgattcagttaatcaatattagataaaatttgtgttgagttctt 72  Q
    |||||||||||||||| |||||||  || ||||||||||||||||||||||||    
T  45804985 cgagagagatgattcaattaatcatcatcagataaaatttgtgttgagttctt 45805037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 7858209 - 7858256
Alignment:
Q  205 tgttaattttcttcaagtattttacatacatataagttttattataaa 252  Q
    |||| |||||||||||||||||||||| ||||||||||||| ||||||    
T  7858209 tgttcattttcttcaagtattttacatgcatataagttttaatataaa 7858256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 25310795 - 25310736
Alignment:
Q  205 tgttaattttcttcaagtattttacatacatataagttttattataa-atttttcttaac 263  Q
    |||| ||||||||||| |||||||||||||||||||||||| ||||| |||||| |||||    
T  25310795 tgtttattttcttcaaatattttacatacatataagttttagtataatatttttgttaac 25310736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 40836532 - 40836583
Alignment:
Q  21 gagagagatgattcagttaatcaatattagataaaatttgtgttgagttctt 72  Q
    ||||||| |||||||||||||||| ||| ||||||||||||||| |||||||    
T  40836532 gagagaggtgattcagttaatcaacattcgataaaatttgtgttaagttctt 40836583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 268
Target Start/End: Original strand, 48153238 - 48153297
Alignment:
Q  210 attttcttcaagtattttacatacatataagttttattat-aaatttttcttaacatatt 268  Q
    |||| ||||||||||||||||||||||||| ||||| ||| |||||||| ||||||||||    
T  48153238 atttacttcaagtattttacatacatataaattttagtataaaatttttgttaacatatt 48153297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 48153175 - 48153229
Alignment:
Q  21 gagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaat 77  Q
    ||||||| |||||||||||||||| |||||||||||||  | |||||||||||||||    
T  48153175 gagagaggtgattcagttaatcaacattagataaaatt--tcttgagttcttttaat 48153229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 25310863 - 25310819
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttat 177  Q
    ||||||| ||||||||||||| |||| ||||||||||||||||||    
T  25310863 ttattttgatcacatgtattacttttaaaaaattgtaacttttat 25310819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 43495670 - 43495618
Alignment:
Q  205 tgttaattttcttcaagtattttacatacatataagttttattataaattttt 257  Q
    |||| ||||||||||  |||||||||||||||||||||||| |||||| ||||    
T  43495670 tgtttattttcttcagatattttacatacatataagttttagtataaaatttt 43495618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 22201255 - 22201310
Alignment:
Q  31 attcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttct 86  Q
    ||||| |||||||||| |||| ||||||||||||||| | |||||||||| |||||    
T  22201255 attcaattaatcaatagtagacaaaatttgtgttgagctattttaatgatacttct 22201310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 22236566 - 22236511
Alignment:
Q  31 attcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttct 86  Q
    ||||| |||||||||| |||| ||||||||||||||| | |||||||||| |||||    
T  22236566 attcaattaatcaatagtagacaaaatttgtgttgagctattttaatgatacttct 22236511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 43495722 - 43495674
Alignment:
Q  29 tgattcagttaatcaatattagataaaatttgtgttgagttcttttaat 77  Q
    ||||||| ||||| || ||||||||||||||| ||| ||||||||||||    
T  43495722 tgattcatttaattaacattagataaaatttgagttaagttcttttaat 43495674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 9 - 263
Target Start/End: Complemental strand, 11789366 - 11789101
Alignment:
Q  9 gatgaacgttgcgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaa 108  Q
    ||||||| | ||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  11789366 gatgaacatagcgagagatgtgattcagttaatcaacattagataaaatttgtgttgagttcttttaatgatgtttctctcaatatcccaacatatgaaa 11789267  T
Q  109 atgtaa-attgtttatnnnnnnnnntt------------attttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaag 195  Q
    |||||| || ||||||         ||            ||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  11789266 atgtaatatggtttataagaaaactttcaaaaaaaatatattttgatcacatgtattatttttaaaaaattataacttttataataatacaataatgaag 11789167  T
Q  196 agtaatcggtgttaattttcttcaagtattttacatacatataagttttattataaatttttcttaac 263  Q
    ||||  |  |||||||||||||| | ||||||||||||||||||||||||||||||| |||| |||||    
T  11789166 agta--caatgttaattttcttcgaatattttacatacatataagttttattataaaattttgttaac 11789101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 134 - 263
Target Start/End: Original strand, 9410136 - 9410264
Alignment:
Q  134 tattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatac 233  Q
    |||||| ||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||| |||||    
T  9410136 tattttgatcacatgtataatttt-taaaaattgtaacttttacaataatacaataatgaagagtaatcaatgttaattttcttcaagtatttttcatac 9410234  T
Q  234 atataagttttattataaatttttcttaac 263  Q
    |||||||||||||||||| ||||| |||||    
T  9410235 atataagttttattataattttttgttaac 9410264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 257
Target Start/End: Complemental strand, 18928531 - 18928292
Alignment:
Q  29 tgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaatgtaa-attgttta----- 122  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||  ||||||||||||| ||| || |||||         
T  18928531 tgattcagttaatcaatattaaataaaatttgtgttgagttcttttaattatgcttcactcgatatctgaacatatgaaaatataatatggtttataaga 18928432  T
Q  123 -----tnnnnnnnnnttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttctt 217  Q
         |         ||||||| ||||||||||||||||||  |||||| | ||||||||| ||||| |||||| |||| |||||  |||| | ||  ||    
T  18928431 aaactttacatttttttattttgatcacatgtattatttttgtaaaattttgacttttatattaatataataataaagaataatcaatgtttacttcatt 18928332  T
Q  218 caagtattttacatacatataagttttattataaattttt 257  Q
    |||||||||||||||||| |||||| || |||||||||||    
T  18928331 caagtattttacatacatttaagttctagtataaattttt 18928292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 149 - 265
Target Start/End: Original strand, 26079544 - 26079660
Alignment:
Q  149 tattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagttttatta 248  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||  |  | |||||||||||||||||||||| ||||||||||||| ||    
T  26079544 tattattttttaaaaattgtgacttttataataatataataatgaagagtaatcaattgtgattttcttcaagtattttacattcatataagttttagta 26079643  T
Q  249 taaatttttcttaacat 265  Q
    ||||  ||| |||||||    
T  26079644 taaaaatttgttaacat 26079660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 24728411 - 24728279
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataat--------gaagagtaatcggtgttaattttcttcaagtat 224  Q
    ||||||| ||||||| |||||||||| ||||||||| ||||||||||||| | ||||||        |||||||||||| |||| |||||||||||||||    
T  24728411 ttattttcatcacatatattatttttaaaaaattgtgacttttataataagataataattaaataatgaagagtaatcgatgtttattttcttcaagtat 24728312  T
Q  225 tttacatacatataagttttattataaattttt 257  Q
    |||||||||| |||||||||| |||||||||||    
T  24728311 tttacatacaaataagttttagtataaattttt 24728279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 24728538 - 24728449
Alignment:
Q  21 gagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaat 110  Q
    ||||||| |||||||||||||||| |||||||||||||| |||||| |||||||||| || ||||||||||||||| |||||||||||||    
T  24728538 gagagaggtgattcagttaatcaacattagataaaatttatgttgacttcttttaattattcttctctcgatatccaaacatatgaaaat 24728449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 6166708 - 6166783
Alignment:
Q  139 taatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaatttt 214  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||    
T  6166708 taatcacatgtactattttttaaaaattgtatcttttataataatacaataataaagagtaatcagtgttaatttt 6166783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 16591282 - 16591156
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaa--ttgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttaca 230  Q
    ||||||| ||||||| |||||||||  |||||  |||  | ||||||||||||| |||||||||||||||||  |  | |||||||||||||||||||||    
T  16591282 ttattttgatcacatctattattttaaaaaaagattgcgagttttataataatataataatgaagagtaatcaatactgattttcttcaagtattttaca 16591183  T
Q  231 tacatataagttttattataaattttt 257  Q
    | |||||||||||||||||||| ||||    
T  16591182 tgcatataagttttattataaaatttt 16591156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 9410060 - 9410127
Alignment:
Q  9 gatgaacgttgcgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaa 76  Q
    ||||||||| ||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9410060 gatgaacgtagcgagagatgtgattcagttaatcaatattagataaattttgtgttgagttcttttaa 9410127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 186 - 257
Target Start/End: Original strand, 13003565 - 13003636
Alignment:
Q  186 aataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagttttattataaattttt 257  Q
    |||||||||||||||||  |||| ||||||||||| |||||||||||||||||||||||| |||||||||||    
T  13003565 aataatgaagagtaatcaatgtttattttcttcaaatattttacatacatataagttttagtataaattttt 13003636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 6166567 - 6166669
Alignment:
Q  12 gaacgttgcgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaatg 111  Q
    |||||| ||||||||| |||||||||||  ||| |||| ||||||||  |||| |||||||||||||||| ||||||| ||||| || ||||||||||||    
T  6166567 gaacgtagcgagagaggtgattcagttagacaacattaaataaaattaatgttaagttcttttaatgatgtttctctcaatatcacatcatatgaaaatg 6166666  T
Q  112 taa 114  Q
    |||    
T  6166667 taa 6166669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 24888739 - 24888658
Alignment:
Q  29 tgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaat 110  Q
    |||||||||||||||| |||||||||||| | ||||||||||||||||| || |||||||||||| |  |||||||||||||    
T  24888739 tgattcagttaatcaacattagataaaatatatgttgagttcttttaattattcttctctcgataacaaaacatatgaaaat 24888658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 25430174 - 25430255
Alignment:
Q  29 tgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaat 110  Q
    |||||||||||||||| |||| ||||||| ||||||||||||||||||| || |||||||||||| |  |||||||||||||    
T  25430174 tgattcagttaatcaacattaaataaaatatgtgttgagttcttttaattattcttctctcgataacaaaacatatgaaaat 25430255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 11990887 - 11990973
Alignment:
Q  21 gagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaa 107  Q
    |||| ||| |||||| ||||||||||||||| ||||||||| |||| ||||||||||||||||| | | ||||||||||||| ||||    
T  11990887 gagaaagaagattcaattaatcaatattagacaaaatttgtattgaattcttttaatgatgcttatgttgatatcccaacatttgaa 11990973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 12006841 - 12006927
Alignment:
Q  21 gagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaa 107  Q
    |||||||| ||||||  ||||||| ||| || ||||||||||| ||||||||||||| |||||| ||| ||||||||||||||||||    
T  12006841 gagagagaagattcaactaatcaacattggacaaaatttgtgtagagttcttttaattatgcttttcttgatatcccaacatatgaa 12006927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 252
Target Start/End: Complemental strand, 24888620 - 24888506
Alignment:
Q  137 tttaatcacatgtattattttttaaaaa--ttgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacataca 234  Q
    |||||||||||||||| ||||| |||||  |||| ||||||||||||| | |||| |||||||||||||  ||| |||   |||||||||||||||||||    
T  24888620 tttaatcacatgtattgtttttaaaaaaaattgtgacttttataataacataatagtgaagagtaatcgaagtttatt---ttcaagtattttacataca 24888524  T
Q  235 tataagttttattataaa 252  Q
     ||| |||||| ||||||    
T  24888523 aataggttttagtataaa 24888506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 31332603 - 31332524
Alignment:
Q  30 gattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaa 109  Q
    |||||| |||||||| ||||||||||||||||||||| || ||||||| ||| |||| || |||||||||||||| ||||    
T  31332603 gattcaattaatcaacattagataaaatttgtgttgaatttttttaataatgtttctgtccatatcccaacatataaaaa 31332524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 250
Target Start/End: Complemental strand, 31431167 - 31431065
Alignment:
Q  149 tattattttttaaaaattgta-acttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagttttatt 247  Q
    |||||||||| |||| ||||  ||||||||||||||| ||| || |||| |||||  || | |||||||||||||||||||||| ||||||||||||| |    
T  31431167 tattatttttaaaaagttgttgacttttataataatataatcataaagattaatcaatgcttattttcttcaagtattttacatgcatataagttttagt 31431068  T
Q  248 ata 250  Q
    |||    
T  31431067 ata 31431065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 31431349 - 31431280
Alignment:
Q  38 taatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaa 107  Q
    ||||||| |||||| ||||||||||||||||||||||||||||| |||| | ||||||  ||||||||||    
T  31431349 taatcaagattagacaaaatttgtgttgagttcttttaatgatgtttctgtggatatcttaacatatgaa 31431280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 11755531 - 11755451
Alignment:
Q  172 ttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagttttattataaa 252  Q
    |||||||||| || |||||| ||||||||||  |||| |||||||||||||||||||||| |  |||||||||| ||||||    
T  11755531 ttttataatagtataataatcaagagtaatcaatgtttattttcttcaagtattttacatgcgcataagttttaatataaa 11755451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 11991014 - 11991083
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatc 202  Q
    ||||||| |||||| || |||||||  ||||||||| ||||||||||||| | |||||||||||||||||    
T  11991014 ttattttgatcacacgttttattttaaaaaaattgtgacttttataataaaataataatgaagagtaatc 11991083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 17748844 - 17748796
Alignment:
Q  29 tgattcagttaatcaatattagataaaatttgtgttgagttcttttaat 77  Q
    ||||| |||||||||| ||||||||||||||||||| ||||||||||||    
T  17748844 tgattaagttaatcaacattagataaaatttgtgttcagttcttttaat 17748796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 23877282 - 23877230
Alignment:
Q  205 tgttaattttcttcaagtattttacatacatataagttttattataaattttt 257  Q
    |||| |||||||||||||||||||| |||||||||||| || |||||||||||    
T  23877282 tgtttattttcttcaagtattttacttacatataagttgtagtataaattttt 23877230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 252
Target Start/End: Original strand, 25430293 - 25430406
Alignment:
Q  137 tttaatcacatgtattattttttaaaaa-ttgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatacat 235  Q
    |||||||||||||||| ||||  ||||| ||||  |||||||||||| | |||||||| |||||||||  ||| |||   ||||||||||||||||| |     
T  25430293 tttaatcacatgtattgttttaaaaaaaattgtgtcttttataataaaataataatgacgagtaatcgaagtttatt---ttcaagtattttacatagaa 25430389  T
Q  236 ataagttttattataaa 252  Q
    ||| |||||| ||||||    
T  25430390 ataggttttagtataaa 25430406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 17748792 - 17748755
Alignment:
Q  205 tgttaattttcttcaagtattttacatacatataagtt 242  Q
    |||| |||||||||||||||||||||||||||||||||    
T  17748792 tgtttattttcttcaagtattttacatacatataagtt 17748755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 18322089 - 18322129
Alignment:
Q  212 tttcttcaagtattttacatacatataagttttattataaa 252  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  18322089 tttcttcaagtattttacatgcatataagttttaatataaa 18322129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 299
Target Start/End: Original strand, 18322153 - 18322189
Alignment:
Q  263 catattgtatcctaaattttaaaaaatttgtatatcc 299  Q
    ||||||||||||||||||||||||||||| |||||||    
T  18322153 catattgtatcctaaattttaaaaaatttatatatcc 18322189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 32856173 - 32856217
Alignment:
Q  33 tcagttaatcaatattagataaaatttgtgttgagttcttttaat 77  Q
    |||||||||||| ||||||||||||| ||||||| ||||||||||    
T  32856173 tcagttaatcaacattagataaaattcgtgttgaattcttttaat 32856217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 32856221 - 32856261
Alignment:
Q  205 tgttaattttcttcaagtattttacatacatataagtttta 245  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  32856221 tgtttattttgttcaagtattttacatacatataagtttta 32856261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 77
Target Start/End: Complemental strand, 23877317 - 23877286
Alignment:
Q  46 attagataaaatttgtgttgagttcttttaat 77  Q
    ||||||||||||||||||||||||||||||||    
T  23877317 attagataaaatttgtgttgagttcttttaat 23877286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 306
Target Start/End: Original strand, 22486043 - 22486085
Alignment:
Q  264 atattgtatcctaaattttaaaaaatttgtatatccacgtact 306  Q
    |||||||||||||||||||||||  |||| |||||||||||||    
T  22486043 atattgtatcctaaattttaaaatttttgcatatccacgtact 22486085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 253
Target Start/End: Original strand, 37232054 - 37232167
Alignment:
Q  141 atcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttct-tcaagtattttacatacatataa 239  Q
    ||||||| |||||||||||  ||||||| ||||||||  | ||| | || ||||||||||||  || | ||||| | | ||||||||||||| |||||||    
T  37232054 atcacatatattattttttgtaaattgtgacttttatgcttatatagtattgaagagtaatcaatgcttattttttgttaagtattttacatgcatataa 37232153  T
Q  240 gttttattataaat 253  Q
     ||||| |||||||    
T  37232154 attttaatataaat 37232167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 9e-55; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 9 - 262
Target Start/End: Complemental strand, 2032348 - 2032078
Alignment:
Q  9 gatgaacgttgcgagagagatgattcagttaatcaatattagataaaatttgtgttgagttctttt-aatgatgcttctctcgatatcccaacatatgaa 107  Q
    ||||||||| ||||||||  | |||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||    
T  2032348 gatgaacgtagcgagagatgttattcagttaatcaacattagataaaatttgtgttgagttctttttaatgatgtttctctcaatatcctaacatatgaa 2032249  T
Q  108 aatgtaa-attgtttatnnnnnnnnntt------------attttaatcacatgtattattttttaaaaattgtaacttttataataa---tacaataat 191  Q
    ||||||| || ||||||         ||            ||||| |||||||||||||||||| |||||||||||||||||||||||   |||||||||    
T  2032248 aatgtaatatggtttataagaaaactttcaaaaaaaaattattttgatcacatgtattatttttaaaaaattgtaacttttataataacaatacaataat 2032149  T
Q  192 gaagagtaatcggtgttaattttcttcaagtattttacatacatataagttttattataaatttttcttaa 262  Q
    ||| |||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2032148 gaaaagtaatcaacgttaattttcttcaagtattttacatacatataagttttattataaatttttgttaa 2032078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 29 - 257
Target Start/End: Complemental strand, 688052 - 687815
Alignment:
Q  29 tgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaatgtaa-attgtttatnnnn 127  Q
    |||||||||||||||   ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||        
T  688052 tgattcagttaatca---ttagataaaatttgtgtcgagttcttttaatgatgtttctctcgatatcctaacatatgaaaatgtaatatggtttataaga 687956  T
Q  128 nnnnntt-----------attttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagag---taatcggtgttaattt 213  Q
         ||           ||||| |||||||| ||||||||| ||||||||||||||||||||||   |||||||||||||   |||||  |||||||||    
T  687955 aaactttcaaaatttgttattttgatcacatgcattatttttaaaaaattgtaacttttataata---caataatgaagagcaataatcaatgttaattt 687859  T
Q  214 tcttcaagtattttacatacatataagttttattataaattttt 257  Q
    ||||||| |||||||||||||||||| |||||||||||||||||    
T  687858 tcttcaattattttacatacatataaattttattataaattttt 687815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 32340256 - 32340168
Alignment:
Q  22 agagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaat 110  Q
    |||||| | |||||| ||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  32340256 agagaggtaattcagctaatcaacattagataaaatttgtgttgagttcttttgatgatgattctctcgatatcccaacatatgaaaat 32340168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 133 - 239
Target Start/End: Complemental strand, 32340130 - 32340024
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacata 232  Q
    ||||||| || ||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||| |  ||   |||||||||||||||||||||||    
T  32340130 ttattttgattacatgtattatttttaaaaaattgtgacttttataataatataataatgaagagtaaccaatgcatattttcttcaagtattttacata 32340031  T
Q  233 catataa 239  Q
    |||||||    
T  32340030 catataa 32340024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 22297349 - 22297261
Alignment:
Q  22 agagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaat 110  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||||||||||||  |||||| ||| |||||||||||||||||||||    
T  22297349 agagaggtgattcagttaatcaacattagataaaatttatgttgagttcttttaacaatgcttatcttgatatcccaacatatgaaaat 22297261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 22297211 - 22297118
Alignment:
Q  143 cacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatacata 236  Q
    |||||||||||||||||||||||||  ||||||||||||||| || ||| ||||||||||  |||| |||||||||||||||||||||| ||||    
T  22297211 cacatgtattattttttaaaaattgcgacttttataataatataacaataaagagtaatcaatgttcattttcttcaagtattttacatgcata 22297118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 12283700 - 12283614
Alignment:
Q  21 gagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaa 107  Q
    |||||||  |||||| |||||||| ||||   |||||||||||||| ||||||||||||||||||| | ||||||||||||||||||    
T  12283700 gagagaggagattcaattaatcaacattaatcaaaatttgtgttgaattcttttaatgatgcttctattgatatcccaacatatgaa 12283614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 2988107 - 2988051
Alignment:
Q  21 gagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaat 77  Q
    ||||||| |||||||||||||||||||||||||| || |||||||||||||||||||    
T  2988107 gagagagctgattcagttaatcaatattagataatatatgtgttgagttcttttaat 2988051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 12311995 - 12311919
Alignment:
Q  31 attcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaa 107  Q
    ||||| |||||||| |||| | |||| ||||||||||||||||| ||||||||||| | ||||||||||||||||||    
T  12311995 attcaattaatcaacattaaacaaaacttgtgttgagttcttttgatgatgcttctattgatatcccaacatatgaa 12311919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 186 - 257
Target Start/End: Original strand, 30928568 - 30928639
Alignment:
Q  186 aataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagttttattataaattttt 257  Q
    |||||||||| ||||||  |||| ||||||||||||||||||||||| |||||||||||| |||||| ||||    
T  30928568 aataatgaagggtaatcaatgtttattttcttcaagtattttacatatatataagttttagtataaaatttt 30928639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 7434963 - 7435019
Alignment:
Q  21 gagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaat 77  Q
    ||||||| |||||||||||||||| | ||||||| ||||||||||||||||||||||    
T  7434963 gagagaggtgattcagttaatcaacactagataacatttgtgttgagttcttttaat 7435019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 8486082 - 8486171
Alignment:
Q  20 cgagagagatga--ttcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaa 107  Q
    ||||||||||||  ||||  ||||||| |||||| |||||||| || || || |||||||||||||||||| |||||| |||||||||||    
T  8486082 cgagagagatgagattcaactaatcaacattagacaaaatttgcgtagaattattttaatgatgcttctcttgatatctcaacatatgaa 8486171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 22054307 - 22054400
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttac 229  Q
    ||||||| |||| |||| |||||||| ||||||||| ||||  ||||||||| |||||| |||||||| |  |||| ||||||||||||||||||||    
T  22054307 ttattttgatca-atgtgttatttttaaaaaattgtgactt--ataataatataataataaagagtaaccaatgtttattttcttcaagtattttac 22054400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 7435023 - 7435075
Alignment:
Q  205 tgttaattttcttcaagtattttacatacatataagttttattataaattttt 257  Q
    |||| ||||||||||||||||||||||||||| |||||||| |||||| ||||    
T  7435023 tgtttattttcttcaagtattttacatacatagaagttttagtataaaatttt 7435075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 10229649 - 10229701
Alignment:
Q  205 tgttaattttcttcaagtattttacatacatataagttttattataaattttt 257  Q
    |||| ||||| ||||||||||||||||||||||| |||||| |||||||||||    
T  10229649 tgtttattttgttcaagtattttacatacatatatgttttagtataaattttt 10229701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 253
Target Start/End: Original strand, 1929160 - 1929274
Alignment:
Q  134 tattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatac 233  Q
    |||||| || ||||||||||||||||  ||||||  ||||||||||| ||| | || ||||||||||||  |||   ||||||  ||||||||||||| |    
T  1929160 tattttgattacatgtattattttttgtaaattgcgacttttataattatatagtattgaagagtaatcaatgt---ttttct--aagtattttacatgc 1929254  T
Q  234 atataagttttattataaat 253  Q
    |||||| ||||| |||||||    
T  1929255 atataaattttagtataaat 1929274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 2988047 - 2988001
Alignment:
Q  205 tgttaattttcttcaagtattttacatacatataagttttattataa 251  Q
    |||| ||||||||||||||||||||||||||||||| |||| |||||    
T  2988047 tgtttattttcttcaagtattttacatacatataaggtttagtataa 2988001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 10229597 - 10229647
Alignment:
Q  29 tgattcagttaatcaatattagataaaatttgtgttgagttcttttaatga 79  Q
    ||||| |||||||||| ||||||||||||||  |||||||| |||||||||    
T  10229597 tgatttagttaatcaacattagataaaatttaggttgagttattttaatga 10229647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 30928454 - 30928500
Alignment:
Q  20 cgagagagatgattcagttaatcaatattagataaaatttgtgttga 66  Q
    |||||||||||||||| |||||||| |||  ||||||||||||||||    
T  30928454 cgagagagatgattcaattaatcaacattgaataaaatttgtgttga 30928500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 22054224 - 22054265
Alignment:
Q  68 ttcttttaatgatgcttctctcgatatcccaacatatgaaaa 109  Q
    |||||||||||||| |  ||||||||||||||||||||||||    
T  22054224 ttcttttaatgatgttcttctcgatatcccaacatatgaaaa 22054265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 8486353 - 8486401
Alignment:
Q  269 gtatcctaaattttaaaaaatttgtatatccacgtactcctatcgtatc 317  Q
    ||||||||||||||||||| ||||  ||||||||||| | |||||||||    
T  8486353 gtatcctaaattttaaaaattttgcgtatccacgtacccgtatcgtatc 8486401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 319
Target Start/End: Original strand, 22054482 - 22054530
Alignment:
Q  271 atcctaaattttaaaaaatttgtatatccacgtactcctatcgtatccg 319  Q
    ||||||||||| ||||||||||||||||| ||||| | ||| |||||||    
T  22054482 atcctaaatttgaaaaaatttgtatatccgcgtacccgtattgtatccg 22054530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 26546086 - 26546011
Alignment:
Q  30 gattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatga 106  Q
    |||||| | ||||||| ||| | ||||||||| |||||||||||| |||||| |||| | ||||||| |||||||||    
T  26546086 gattcaatcaatcaattttaaacaaaatttgtcttgagttctttt-atgatgtttctgttgatatcctaacatatga 26546011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 141 - 263
Target Start/End: Complemental strand, 42794623 - 42794501
Alignment:
Q  141 atcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataag 240  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||    
T  42794623 atcacatgtattattttttaaaaattataacttttataataatacaataatgaagagtaatcaatgttaattttcttcaagtattttacatacatacaag 42794524  T
Q  241 ttttattataaatttttcttaac 263  Q
    ||||||||||||||||| |||||    
T  42794523 ttttattataaatttttgttaac 42794501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 133 - 252
Target Start/End: Original strand, 7018093 - 7018210
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacata 232  Q
    ||||||| |||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||  |||| |||||||||||||||||||||||    
T  7018093 ttattttgatcacatgtattattttttaaaaattg--acttttataataatataataatgaagagtaatcaatgtttattttcttcaagtattttacata 7018190  T
Q  233 catataagttttattataaa 252  Q
    ||| ||||||||| ||||||    
T  7018191 catgtaagttttagtataaa 7018210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 42794766 - 42794661
Alignment:
Q  9 gatgaacgttgcgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaa 108  Q
    ||||||||| |||||| | |||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  42794766 gatgaacgtagcgagaaatatgatttagttaatcaacattagataaaatttgtgttgagttcttttaatgatgtttctctcaatatcccaacatatgaaa 42794667  T
Q  109 atgtaa 114  Q
    ||||||    
T  42794666 atgtaa 42794661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 134 - 246
Target Start/End: Original strand, 41324162 - 41324274
Alignment:
Q  134 tattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatac 233  Q
    |||||| |||||||||||||||||| ||||||||  ||||||||||||||| |||||||||| ||||||  |||| ||||| ||||||||||||||||||    
T  41324162 tattttgatcacatgtattatttttaaaaaattgatacttttataataatataataatgaagggtaatcaatgtttattttgttcaagtattttacatac 41324261  T
Q  234 atataagttttat 246  Q
    |||||||||||||    
T  41324262 atataagttttat 41324274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 133 - 252
Target Start/End: Original strand, 17328984 - 17329103
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacata 232  Q
    ||||||| ||||||||||||||||||||||| |||| ||||||||||||| | |||||| || |||||||| |||| ||||||||||||||||| |||||    
T  17328984 ttattttcatcacatgtattattttttaaaatttgtgacttttataataagataataataaaaagtaatcgatgtttattttcttcaagtatttcacata 17329083  T
Q  233 catataagttttattataaa 252  Q
    || |||||||||| ||||||    
T  17329084 caaataagttttagtataaa 17329103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 30382780 - 30382547
Alignment:
Q  29 tgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaatgtaa-attgttta----- 122  Q
    |||||||||||||||| |||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||| ||| || |||||         
T  30382780 tgattcagttaatcaacattagataaaatttgtattgaattcttttaatgatgtttctctcgatatcccaacatatgaaaatataatatggtttataaga 30382681  T
Q  123 -----tnnnnnnnnnttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttctt 217  Q
         |         ||||||| ||||| ||||||||||||| ||||||| |||||||||||||||| |||||| |||||||||   |  | ||||||||    
T  30382680 aaacttggcttttttttattttgatcacctgtattatttttttaaaattgcaacttttataataatataataataaagagtaattaatacttattttctt 30382581  T
Q  218 caagtattttacatacatataagttttattataa 251  Q
    || ||| |||||| |||||| ||||||| |||||    
T  30382580 catgtaatttacacacatatgagttttaatataa 30382547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 17328855 - 17328947
Alignment:
Q  21 gagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaatgta 113  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| || ||||||||||||||| || |||||||||||||    
T  17328855 gagagagatgattcagttaatcaacattaaataaaatttgtgttgagttcttttaattattcttctctcgatatccaaagatatgaaaatgta 17328947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 245
Target Start/End: Original strand, 35306232 - 35306469
Alignment:
Q  21 gagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaatgtaa-attgt 119  Q
    ||||||||||||| |||||||||| |||||||||||||||||| |||||| ||||| |||  ||||||||||||||| |||||||||||| ||| || ||    
T  35306232 gagagagatgatttagttaatcaacattagataaaatttgtgtggagttc-tttaacgatatttctctcgatatccctacatatgaaaatataatatggt 35306330  T
Q  120 ttatnnnnnnnnnt-------------tattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtg 206  Q
    ||||         |             |||||| || |||| ||||||| |||||||||||| ||||||||||||||| ||||||||| |||||||  ||    
T  35306331 ttataagaaaactttacattttttttttattttgatgacatatattattatttaaaaattgtcacttttataataatataataatgaaaagtaatcaatg 35306430  T
Q  207 ttaattttcttcaagtattttacatacatataagtttta 245  Q
    || |||||||||||||||||||||| ||||||| |||||    
T  35306431 tttattttcttcaagtattttacatgcatataaatttta 35306469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 37272766 - 37272642
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacata 232  Q
    ||||||| |||| |||||||||||||  |||||||| | |||||||||| || |||||||||||||||||  |||| ||||| |||||||||||||||||    
T  37272766 ttattttgatcatatgtattatttttacaaaattgttagttttataatattataataatgaagagtaatcaatgttcatttttttcaagtattttacata 37272667  T
Q  233 catataagttttattataaattttt 257  Q
    ||||||| ||||  |||||||||||    
T  37272666 catataaatttttatataaattttt 37272642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 41324030 - 41324119
Alignment:
Q  20 cgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaat 110  Q
    |||||||| |||||||||| || || |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41324030 cgagagaggtgattcagtttat-aacattagatacaatttgtgttgagttcttttaatgatacttctctcgatatcccaacatatgaaaat 41324119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 38140867 - 38141105
Alignment:
Q  9 gatgaacgttgcgagagagatgattcagttaatcaatattagataaaatttgtgttgagttc-------ttttaatgatgcttctctcgatatcccaaca 101  Q
    ||||||||| ||||||||| |||||||||||||||| |||||||||| ||||||||||||||       ||||||||||  || ||||||||||||||||    
T  38140867 gatgaacgtagcgagagaggtgattcagttaatcaacattagataaattttgtgttgagttcttttaaattttaatgatatttttctcgatatcccaaca 38140966  T
Q  102 tatgaaaatgtaa-attgttta-----------tnnnnnnnnnttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaata 189  Q
    ||||||||||||| || |||||           |         ||||||| ||| ||||||||||||||| |||||||||||||||           |||    
T  38140967 tatgaaaatgtaatatggtttataagaaaactttcaaaaaaaattattttgatcgcatgtattatttttttaaaattgtaactttt-----------ata 38141055  T
Q  190 atgaagagtaatcggtgttaattttcttcaagtattttacatacatataa 239  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  38141056 atgaaaagtaatcggtgttaattttcttcaattattttacatacatataa 38141105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 133 - 252
Target Start/End: Original strand, 21813066 - 21813185
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacata 232  Q
    ||||||| |||||||||||||||||  ||||||||| ||||||||||||||| |||||||||||||||||  |  | ||||||||| | ||||||||||     
T  21813066 ttattttgatcacatgtattattttaaaaaaattgtgacttttataataatataataatgaagagtaatcaatactgattttcttcgattattttacatg 21813165  T
Q  233 catataagttttattataaa 252  Q
     |||||||||||| ||||||    
T  21813166 aatataagttttagtataaa 21813185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 30485743 - 30485824
Alignment:
Q  29 tgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaaat 110  Q
    ||||||| |||||||| |||||||||| ||||||||||||||||||||||||| |||| || ||||||||||||||||||||    
T  30485743 tgattcaattaatcaacattagataaagtttgtgttgagttcttttaatgatgtttctttctatatcccaacatatgaaaat 30485824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 40498765 - 40498821
Alignment:
Q  21 gagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaat 77  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40498765 gagagagctgattcagttaatcaacattagataaaatttgtgttgagttcttttaat 40498821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 45389018 - 45389124
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacata 232  Q
    ||||||| |||||||||||||||||||  ||||||| |||||||| || ||| | || |||| |||||||| || | ||||| ||||||||||||||||     
T  45389018 ttattttgatcacatgtattattttttgtaaattgtgacttttatgattatatagtattgaaaagtaatcgatgcttatttttttcaagtattttacatg 45389117  T
Q  233 catataa 239  Q
    |||||||    
T  45389118 catataa 45389124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 40498830 - 40498883
Alignment:
Q  210 attttcttcaagtattttacatacatataagttttattataaatttttcttaac 263  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  40498830 attttcttcaagtattttacatacatataagttttagtataaattttttttaac 40498883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 30485858 - 30485962
Alignment:
Q  133 ttattttaatcacatgtatta-ttttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacat 231  Q
    ||||||| |||||| |||||| ||||||||||||| | ||||||||||||||| |||||| ||||||||||  || | || | ||| ||||||||||||     
T  30485858 ttattttgatcacacgtattaattttttaaaaattttgacttttataataatataataataaagagtaatcaatgcttatgtactttaagtattttacac 30485957  T
Q  232 acata 236  Q
    |||||    
T  30485958 acata 30485962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 37272870 - 37272802
Alignment:
Q  40 atcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaa 108  Q
    |||||| ||||| ||||||| ||||||||||||||||||||  || |||||||||||| ||||||||||    
T  37272870 atcaatcttagacaaaatttatgttgagttcttttaatgatatttttctcgatatccctacatatgaaa 37272802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 40364013 - 40364065
Alignment:
Q  205 tgttaattttcttcaagtattttacatacatataagttttattataaattttt 257  Q
    |||| |||||||||||||||||||| ||||||||||||||| |||||||||||    
T  40364013 tgtttattttcttcaagtattttacgtacatataagttttagtataaattttt 40364065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 257
Target Start/End: Original strand, 5591013 - 5591100
Alignment:
Q  170 acttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagttttattataaattttt 257  Q
    |||||||| || ||| |||||| || |||||||  |||| |||||||||||||| ||| |||| |||||||||||| |||||||||||    
T  5591013 acttttatgatgatataataattaaaagtaatcattgtttattttcttcaagtaatttgcataaatataagttttagtataaattttt 5591100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 40083209 - 40083318
Alignment:
Q  133 ttattttaatcacatgtattatttttt---aaaaattgtaacttttataataa-tacaataatgaagagtaatcggtgttaattttcttcaagtatttta 228  Q
    ||||||||||||| |||||||||||||   |||||| || |||| | |||||| || |||||| |||| |||||  |||| |||||||||||||||||||    
T  40083209 ttattttaatcacctgtattatttttttaaaaaaatggtgacttctttaataaatataataataaagaataatcaatgtttattttcttcaagtatttta 40083308  T
Q  229 catacatata 238  Q
    ||| ||||||    
T  40083309 catgcatata 40083318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 44364692 - 44364785
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttac 229  Q
    ||||||| |||| |||| |||||||| ||||||||| ||||  ||||||||| |||||| |||||||| |  |||| ||||||||||||||||||||    
T  44364692 ttattttgatca-atgtgttatttttaaaaaattgtgactt--ataataatataataataaagagtaaccaatgtttattttcttcaagtattttac 44364785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 11457956 - 11458019
Alignment:
Q  21 gagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgctt 84  Q
    |||||||| |||| | |||||||| |||||| ||||||||||||| ||| ||||||||||||||    
T  11457956 gagagagaagatttaattaatcaacattagacaaaatttgtgttgcgttattttaatgatgctt 11458019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 7017979 - 7018028
Alignment:
Q  21 gagagagatgattcagttaatcaatattagataaaatttgtgttgagttc 70  Q
    ||||||| | |||| ||||||||| |||||||||||||||||||||||||    
T  7017979 gagagaggtaattcggttaatcaacattagataaaatttgtgttgagttc 7018028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 40083089 - 40083166
Alignment:
Q  30 gattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaa 107  Q
    |||||| |||||||| |||||  ||||||||||||||||||| ||||| ||| |||| | ||||||| ||||| ||||    
T  40083089 gattcaattaatcaacattaggcaaaatttgtgttgagttctgttaatcatgtttctgtagatatcctaacatttgaa 40083166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 40363953 - 40364009
Alignment:
Q  20 cgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaat 77  Q
    ||||| || ||||||| ||||||| ||||||||||||| |||||||||||||||||||    
T  40363953 cgagataggtgattcaattaatca-tattagataaaatgtgtgttgagttcttttaat 40364009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 11562073 - 11562009
Alignment:
Q  186 aataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagttttattata 250  Q
    |||||||||| ||||||  || | ||||||||||||||||||| |||||||||||| ||| ||||    
T  11562073 aataatgaagggtaatcaatgcttattttcttcaagtattttatatacatataagtgttagtata 11562009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 8948171 - 8948226
Alignment:
Q  22 agagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaat 77  Q
    ||||||| |||||| ||||||||||||| | ||||||| |||||| ||||||||||    
T  8948171 agagagaagattcaattaatcaatattaaacaaaatttatgttgaattcttttaat 8948226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 12599166 - 12599225
Alignment:
Q  21 gagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgat 80  Q
    |||||||  |||||| |||||||| |||||| || |||||||||| ||||||||||||||    
T  12599166 gagagaggagattcaattaatcaacattagacaacatttgtgttgtgttcttttaatgat 12599225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 38595899 - 38595806
Alignment:
Q  160 aaaaattgtaacttttataataatacaa-taatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagttttattataaa 252  Q
    |||| |||| ||||||||||||||| || |||| |||| ||||   || | ||| ||||||||||||||||| |||||| ||||||| ||||||    
T  38595899 aaaatttgtgacttttataataatataaataataaagaataataaatgcttattatcttcaagtattttacacacatatgagttttagtataaa 38595806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 44364609 - 44364650
Alignment:
Q  68 ttcttttaatgatgcttctctcgatatcccaacatatgaaaa 109  Q
    |||||||||||||| |  ||||||||||||||||||||||||    
T  44364609 ttcttttaatgatgttcttctcgatatcccaacatatgaaaa 44364650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 25576205 - 25576241
Alignment:
Q  221 gtattttacatacatataagttttattataaattttt 257  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  25576205 gtattttacatacatataagttttattgtaatttttt 25576241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 36925801 - 36925845
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttat 177  Q
    ||||||| |||||||||||||||||||  ||||||| ||||||||    
T  36925801 ttattttgatcacatgtattattttttgtaaattgtgacttttat 36925845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 43344747 - 43344679
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaat 201  Q
    ||||||| |||||||||||||||||||   |||||| |||||||| || ||| | || |||||||||||    
T  43344747 ttattttgatcacatgtattattttttgtgaattgtgacttttatgattatatagtattgaagagtaat 43344679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 319
Target Start/End: Original strand, 44364867 - 44364915
Alignment:
Q  271 atcctaaattttaaaaaatttgtatatccacgtactcctatcgtatccg 319  Q
    ||||||||||| ||||||||||||||||| ||||| | ||| |||||||    
T  44364867 atcctaaatttgaaaaaatttgtatatccgcgtacccgtattgtatccg 44364915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 133 - 263
Target Start/End: Original strand, 8168 - 8303
Alignment:
Q  133 ttattttaatcacatgtattattttttaaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacata 232  Q
    ||||||| | |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  8168 ttattttgaccacatgtattatttttaaaaaattataacttttataataatacaataatgaagagtaatcaatgttaattttcttcaagtattttacata 8267  T
Q  233 catataag-----ttttattataaatttttcttaac 263  Q
    |||||||      ||||||||||||||||| |||||    
T  8268 catataatataacttttattataaatttttgttaac 8303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 8033 - 8138
Alignment:
Q  9 gatgaacgttgcgagagagatgattcagttaatcaatattagataaaatttgtgttgagttcttttaatgatgcttctctcgatatcccaacatatgaaa 108  Q
    ||||||||| ||||||||  |||||||||||||||| |||||||||||||||||||| |||||||||| |||| ||||||| | ||||||||||||||||    
T  8033 gatgaacgtagcgagagatgtgattcagttaatcaaaattagataaaatttgtgttgggttcttttaacgatgtttctctcaacatcccaacatatgaaa 8132  T
Q  109 atgtaa 114  Q
    ||||||    
T  8133 atgtaa 8138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 38372 - 38306
Alignment:
Q  186 aataatgaagagtaatcggtgttaattttcttcaagtattttacatacatataagttttattataaa 252  Q
    |||||||||| ||||||  |||| |||||||||||||||||||||||||||||||||||| ||||||    
T  38372 aataatgaagggtaatcaatgtttattttcttcaagtattttacatacatataagttttaatataaa 38306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 6364 - 6422
Alignment:
Q  205 tgttaattttcttcaagtattttacatacatataagttttattataaatttttcttaac 263  Q
    |||| ||||| ||||||||||||||||||||||| |||||| ||||||||||| |||||    
T  6364 tgtttattttgttcaagtattttacatacatatatgttttagtataaatttttattaac 6422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 6312 - 6362
Alignment:
Q  29 tgattcagttaatcaatattagataaaatttgtgttgagttcttttaatga 79  Q
    ||||| |||||||||| ||||||||||||||  |||||||| |||||||||    
T  6312 tgatttagttaatcaacattagataaaatttaggttgagttattttaatga 6362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 8296 - 8360
Alignment:
Q  160 aaaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtat 224  Q
    ||||||||| ||||||||||||| | ||||||||| | |||||  || | |||||||||||||||    
T  8296 aaaaattgtgacttttataataacataataatgaaaaataatcaatgcttattttcttcaagtat 8360  T

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