View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17797_low_25 (Length: 351)
Name: NF17797_low_25
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 45889673 - 45889337
Alignment:
| Q |
1 |
atacggacacctattataattagtcctatctattgcttagtgtcaaagtccgtaatgatgaatagctcccaaatttacactttcctagacttgttaattg |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45889673 |
atactgacacctattataattagtcctatctattgcttagtgtcaaagtccgtaatgatgaatagctcccaaatttacactttcctagacttgttaattg |
45889574 |
T |
|
| Q |
101 |
catttgtgagcatgttgtgcatgatccatgtatttgatagtaagctgaaagtggtttatgtaacacaaagacaggatgacagaggtacaagtgtagccta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45889573 |
catttgtgagcatgttgtgcatgatccatgtatttgatagtaagctgaaagtggtttatgtaacacaaagacaggatgacataggtacaagtgtagccta |
45889474 |
T |
|
| Q |
201 |
tagtgagaaaaatcatgcgaagttcacacagaactatacaattactttgataggttaatattctcttatgagaattgatatttgaacacaatagtcgaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45889473 |
tagtgagaaaaatcatgcgaagttcacacagaactatacaattactttgataggttaatattctcttatgagaattgatatttgaacacaatagtcgaca |
45889374 |
T |
|
| Q |
301 |
tctacatcatcgaatctaatacgatcagagacacagg |
337 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
45889373 |
tctacatcatcgaatctaatacgatcagagacacagg |
45889337 |
T |
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