View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17797_low_26 (Length: 346)

Name: NF17797_low_26
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17797_low_26
NF17797_low_26
[»] chr2 (3 HSPs)
chr2 (1-178)||(18805935-18806112)
chr2 (223-335)||(18807093-18807205)
chr2 (261-336)||(14463055-14463130)
[»] chr8 (1 HSPs)
chr8 (202-302)||(33468171-33468271)
[»] chr7 (2 HSPs)
chr7 (201-294)||(6066693-6066786)
chr7 (198-247)||(6650403-6650452)
[»] chr4 (2 HSPs)
chr4 (201-322)||(15994089-15994210)
chr4 (1-133)||(4598411-4598543)
[»] scaffold0495 (1 HSPs)
scaffold0495 (201-280)||(7997-8075)
[»] chr6 (1 HSPs)
chr6 (201-280)||(10231274-10231352)
[»] scaffold0001 (1 HSPs)
scaffold0001 (201-280)||(67535-67614)
[»] chr3 (1 HSPs)
chr3 (200-242)||(21396331-21396373)


Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 18805935 - 18806112
Alignment:
Q  1 ctgcccgttggtttaggaagtttcatgagaaaccttagagagggagcttgatgcatgtcattgtgatcatcaataatattatacgagcttggtcgttaat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  18805935 ctgcccgttggtttaggaagtttcttgagaaaccttagagagggagcttgatgtatgtcattgtgatcaccaataatattatacgagcttggtcgttaat 18806034  T
Q  101 caagagcaactttaatctttaattggttttcttaatcaacacttatctaaatattgtatggtataaattatacggtat 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18806035 caagagcaactttaatctttaattggttttcttaatcaacacttatctaaatattgtatggtataaattataccgtat 18806112  T

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Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 223 - 335
Target Start/End: Original strand, 18807093 - 18807205
Alignment:
Q  223 tatgtccttttcgattttgagtacatggtttggagagcgagtcctttgttatactttcggacggtaacataaatttttatgttctttcggttactgtgta 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| |||||||||    
T  18807093 tatgtccttttcgattttgagtacatggtttggagagcgagtcctttgttatgctttcagacggtaacataaatttttatgttttttcggctactgtgta 18807192  T
Q  323 atagtatgtctgt 335  Q
    |||||||||||||    
T  18807193 atagtatgtctgt 18807205  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 336
Target Start/End: Original strand, 14463055 - 14463130
Alignment:
Q  261 gagtcctttgttatactttcggacggtaacataaatttttatgttctttcggttactgtgtaatagtatgtctgtg 336  Q
    |||||||||||||| |||||   | ||||||||| ||||||| ||||||||| ||||||||| ||| |||||||||    
T  14463055 gagtcctttgttatgctttcaagctgtaacataattttttattttctttcggctactgtgtagtagcatgtctgtg 14463130  T

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Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 202 - 302
Target Start/End: Complemental strand, 33468271 - 33468171
Alignment:
Q  202 tattggtggttaaaatcgtattatgtccttttcgattttgagtacatggtttggagagcgagtcctttgttatactttcggacggtaacataaattttta 301  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||  |||||||||||||| ||||| | | ||||||| | ||||||    
T  33468271 tattggtggttaaaatcgtattatgcccttttcgattttgagtacatgatttagagattgagtcctttgttatgctttcaggctgtaacatgatttttta 33468172  T
Q  302 t 302  Q
    |    
T  33468171 t 33468171  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 294
Target Start/End: Complemental strand, 6066786 - 6066693
Alignment:
Q  201 ttattggtggttaaaatcgtattatgtccttttcgattttgagtacatggtttggagagcgagtcctttgttatactttcggacggtaacataa 294  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||  || ||||||||| | ||||| | | |||||||||    
T  6066786 ttattggtggctaaaatcgtattatgtccttttcgatttggagtacacggtttggagattgactcctttgttgtgctttcaggctgtaacataa 6066693  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 6650452 - 6650403
Alignment:
Q  198 agtttattggtggttaaaatcgtattatgtccttttcgattttgagtaca 247  Q
    ||||||||||||||||||||| || |||||||||||| ||||||| ||||    
T  6650452 agtttattggtggttaaaatcatactatgtccttttcaattttgaataca 6650403  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 322
Target Start/End: Original strand, 15994089 - 15994210
Alignment:
Q  201 ttattggtggttaaaatcgtattatgtccttttcgattttgagtacatggtttggagagcgagtcctttgttatactttcggacggtaacataaattttt 300  Q
    |||||||||| |||||||||| |||| | ||||||||||||| |||||||||||||||  ||| | ||||||||  ||||  |  |||||||||||||||    
T  15994089 ttattggtggctaaaatcgtaatatgactttttcgattttgattacatggtttggagattgagccttttgttatgttttcaaattgtaacataaattttt 15994188  T
Q  301 atgttctttcggttactgtgta 322  Q
    || ||||||||| |||| ||||    
T  15994189 attttctttcggctactctgta 15994210  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 4598543 - 4598411
Alignment:
Q  1 ctgcccgttggtttaggaagtttcatgagaaaccttagagagggagcttgatgcatgtcattgtgatcatcaataatattatacgagcttggtcgttaat 100  Q
    ||||||||||||||||||| |||| ||| |||||| |||    |||||||||| |||| ||  ||| || |||||| |  ||| ||| |||||| |||||    
T  4598543 ctgcccgttggtttaggaaatttcttgaaaaacctcagaattagagcttgatgtatgtaatcatgaccaccaataaaacaatatgagtttggtcattaat 4598444  T
Q  101 caagagcaactttaatctttaattggttttctt 133  Q
    |||||| |||| |||||||  ||||||||||||    
T  4598443 caagagaaactataatcttgcattggttttctt 4598411  T

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Target: scaffold0495 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 280
Target Start/End: Original strand, 7997 - 8075
Alignment:
Q  201 ttattggtggttaaaatcgtattatgtccttttcgattttgagtacatggtttggagagcgagtcctttgttatactttc 280  Q
    |||||||||| ||||||||||||||| ||||| ||||||||| |||| ||||||||||  |||||||||||||| |||||    
T  7997 ttattggtggctaaaatcgtattatgcccttt-cgattttgactacacggtttggagattgagtcctttgttatgctttc 8075  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 280
Target Start/End: Original strand, 10231274 - 10231352
Alignment:
Q  201 ttattggtggttaaaatcgtattatgtccttttcgattttgagtacatggtttggagagcgagtcctttgttatactttc 280  Q
    |||||||||| ||||||||||||||| ||||| ||||||||| |||| ||||||||||  |||||||||||||| |||||    
T  10231274 ttattggtggctaaaatcgtattatgcccttt-cgattttgactacacggtttggagattgagtcctttgttatgctttc 10231352  T

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Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 67614 - 67535
Alignment:
Q  201 ttattggtggttaaaatcgtattatgtccttttcgattttgagtacatggtttggagagcgagtcctttgttatactttc 280  Q
    |||||||||| ||||||| |||||||  |||||||||||||| ||||||||||| |||   |||| |||||||| |||||    
T  67614 ttattggtggctaaaatcttattatgatcttttcgattttgaatacatggtttgaagattaagtcttttgttatgctttc 67535  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 21396373 - 21396331
Alignment:
Q  200 tttattggtggttaaaatcgtattatgtccttttcgattttga 242  Q
    |||||||||||||||||||||||||| || | |||||||||||    
T  21396373 tttattggtggttaaaatcgtattatatcttgttcgattttga 21396331  T

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