View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17797_low_27 (Length: 336)
Name: NF17797_low_27
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 5922011 - 5921684
Alignment:
| Q |
1 |
aaagtggtaactttaacaattcatgtcacgtgactcaatttagatctaattaacttaatctttacaaaaaccggtttgtaagataaggactaccctctat |
100 |
Q |
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| T |
5922011 |
aaagtggtaactctaacaattcatgtcacgtgactcaatttagatctaattaacttaatctttacaaaaaccagtttgtaagataaggactaccctctat |
5921912 |
T |
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| Q |
101 |
ttataaatacattgttggaccgtatctattcaacgtaggtgttttgagcgattataaaacatctatctatctgtagtaaaataaaccacgtgtgactatt |
200 |
Q |
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| T |
5921911 |
ttataaatacattgttggaccgtatctattcaacttaggtgttttgagcgattataaaacatctatctatctgtagtaaaataaaccacgtgtgactatt |
5921812 |
T |
|
| Q |
201 |
tacctccctagcaattgtctaggctgcataccttttatctcttttccaaaaacctttatattgggccaccattgtacagcttacgcgttgaaattaaatc |
300 |
Q |
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| T |
5921811 |
tacctccctagcaattgtctatgctgcataccttttatctcttctccaaaaacctttatattgggccaccattgtacagcttacgcgttgaaattaaatc |
5921712 |
T |
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| Q |
301 |
accacctcagtgcactcacaggttctgc |
328 |
Q |
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| T |
5921711 |
accacctcagtgcactcacagtttctgc |
5921684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 223 - 321
Target Start/End: Complemental strand, 5961019 - 5960926
Alignment:
| Q |
223 |
gctgcataccttttatctcttttccaaaaacctttatattgggccaccattgtacagcttacgcgttgaaattaaatcaccacctcagtgcactcacag |
321 |
Q |
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| T |
5961019 |
gctgcataccttttatcaagtttccaaaaacctttatattgggccaccattgtacagtttccgcattg-----aagtcaccacctcagtgcactcacag |
5960926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 5949667 - 5949612
Alignment:
| Q |
223 |
gctgcataccttttatctcttttccaaaaacctttatattgggccaccattgtaca |
278 |
Q |
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| T |
5949667 |
gctgcataccttttatcaattttccaaaaacctttatattgggccaccattgtaca |
5949612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 328
Target Start/End: Complemental strand, 5985195 - 5985102
Alignment:
| Q |
230 |
accttttatctcttttccaaaaacctttatattgggccaccattgtacagcttacgcgttgaaattaaatcaccacctcagtgcactcacaggttctgc |
328 |
Q |
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|||||| |||| |||||||| || |||||||||||||||||||| |||||||| | ||||| || ||||||||||||||||||||||| |||||| |
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| T |
5985195 |
acctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttg-----aattcaccacctcagtgcactcacagtttctgc |
5985102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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