View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17797_low_28 (Length: 333)
Name: NF17797_low_28
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_low_28 |
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| [»] scaffold0640 (1 HSPs) |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 6 - 321
Target Start/End: Complemental strand, 41200013 - 41199698
Alignment:
| Q |
6 |
actgagaagaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacattcaaaaacagattagtggtatcctcctgtt |
105 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41200013 |
actgataagaaagaatgaatcgtgtgatatgcatttattacgcaaaacatatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgtt |
41199914 |
T |
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| Q |
106 |
ccaacttacacattgtgaagactcctaaaacaagttcatttctagcttccacttttcttaaatagtctctcagccactttctcaccgattactgattact |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41199913 |
ccaacttacacattgtgaagactcctaaaacaagttcatttctagcttccacttttcttaaatagtctctcagccattttctcaccgattactgattact |
41199814 |
T |
|
| Q |
206 |
acagtagcaagagagaagagcttatgtgtttacctcgcgaagcaaagataatttacatttatatttttagatcaagcatttttagttcaaacaaatagaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41199813 |
acagtagcaagagagaagagcttatgtgtttacctcgcgaagcaaagataatttacatttatatttttagatcaagcatttttagttcaaacaaatagaa |
41199714 |
T |
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| Q |
306 |
aaaaggcagaagtttt |
321 |
Q |
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|||||||||||||||| |
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| T |
41199713 |
aaaaggcagaagtttt |
41199698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 14 - 296
Target Start/End: Complemental strand, 1041693 - 1041411
Alignment:
| Q |
14 |
gaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacattcaaaaacagattagtggtatcctcctgttccaactta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1041693 |
gaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaactta |
1041594 |
T |
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| Q |
114 |
cacattgtgaagactcctaaaacaagttcatttctagcttccacttttcttaaatagtctctcagccactttctcaccgattactgattactacagtagc |
213 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1041593 |
cacattgtgaagactgctaaaacaagttcatttctagcttccacttttcttaaatagtctctcagccactttctcaccgattactgattactacagtagc |
1041494 |
T |
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| Q |
214 |
aagagagaagagcttatgtgtttacctcgcgaagcaaagataatttacatttatatttttagatcaagcatttttagttcaaa |
296 |
Q |
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| T |
1041493 |
aagagagaagagcttatgtgtttacctcgcgaagcaaagataatttacatttatatttttagatcaagcatttttagttcaaa |
1041411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 41192758 - 41192633
Alignment:
| Q |
14 |
gaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacattcaaaaacagattagtggtatcctcctgttccaactta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41192758 |
gaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaactta |
41192659 |
T |
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| Q |
114 |
cacattgtgaagactcctaaaacaag |
139 |
Q |
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||||||||||||||| |||||||||| |
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| T |
41192658 |
cacattgtgaagactgctaaaacaag |
41192633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 41407444 - 41407385
Alignment:
| Q |
13 |
agaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactga |
72 |
Q |
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| T |
41407444 |
agaaagaatgaatagtgtgttatgctttaattacgcaaaactaatgagaaatctaactga |
41407385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 14 - 321
Target Start/End: Complemental strand, 33323284 - 33322976
Alignment:
| Q |
14 |
gaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacattcaaaaacagattagtggtatcctcctgttccaactta |
113 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33323284 |
gaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaactta |
33323185 |
T |
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| Q |
114 |
cacattgtgaagactcctaaaacaagttcatttctagcttccacttttcttaaatagtctctcagccactttctcaccgattactgattactacagtagc |
213 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33323184 |
cacattgtgaagactgctaaaacaagttcatttctagcttccacttttcttaaatagtctctcagccactttctcaccgattactgattactacagtagc |
33323085 |
T |
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| Q |
214 |
aagagagaagagcttatgtgtttacctcgcgaagcaaagataatttacatttatatttttagatcaagcatttttagttc-aaacaaatagaaaaaaggc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33323084 |
aagagagaagagcttatgtgtttacctcgcgaagcaaagataatttacatttatatttttagatcaagcatttttagttcaaaacaaatagaaaaaaggc |
33322985 |
T |
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| Q |
313 |
agaagtttt |
321 |
Q |
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||||||||| |
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| T |
33322984 |
agaagtttt |
33322976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 130
Target Start/End: Original strand, 16700400 - 16700496
Alignment:
| Q |
33 |
tatgcatttattacgcaaaactgatgagaaatctaactgacattcaaaaacagattagtggtatcctcctgttccaacttacacattgtgaagactcc |
130 |
Q |
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||||||||||||| |||||||||||||||| ||||||||| |||| |||||| || ||| | ||||| ||||| ||||| ||||||||| |||||||| |
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| T |
16700400 |
tatgcatttattatgcaaaactgatgagaagtctaactgatattcgaaaacatatcagtcgcatcctgctgtttcaactgacacattgt-aagactcc |
16700496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 3490 - 3549
Alignment:
| Q |
13 |
agaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactga |
72 |
Q |
| |
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||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||| |
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| T |
3490 |
agaaagaatgaatagtgtgttatgctttaattacgcaaaactgatgagaaatctaactga |
3549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 24054 - 24113
Alignment:
| Q |
13 |
agaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactga |
72 |
Q |
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||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||| |
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| T |
24054 |
agaaagaatgaatagtgtgttatgctttaattacgcaaaactgatgagaaatctaactga |
24113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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