View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17797_low_3 (Length: 612)
Name: NF17797_low_3
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_low_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 11 - 612
Target Start/End: Original strand, 48254163 - 48254764
Alignment:
| Q |
11 |
tagcataggttataagcttgcttgcagcttctgtagcatgaatcccatcccaactcacatagttgtaagggtcatcacatgctgttgctgtcactctttt |
110 |
Q |
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| T |
48254163 |
tagcataggttataagcttgcttgcagcttctgtggcatgaatcccatcccaactcacatagttgtaagggtcatcacatgctgttgctgtcactctttt |
48254262 |
T |
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| Q |
111 |
tccatttatctcctttgtatttccacaatacactttaggatcgaagttgtattcacctccaccatatccacaacatgcttttgtaccatattgaagacct |
210 |
Q |
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| T |
48254263 |
tccatttatctcctttgtatttccacaatacactttaggattgaagttgtattcacctccaccatatccacaacatgcttttgtaccatattgaagacct |
48254362 |
T |
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| Q |
211 |
gtttcatgtaagaaacnnnnnnncatttaagggatcattacgattaacaatgttcttttaaaacaagccaagagataagtgtttgaaccatgagaagtag |
310 |
Q |
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| T |
48254363 |
gtttcatgtaacaaacaaaaaaacatttaagggatcattacgattaacaatgttcttttaaaacaagccaaaagataagtgtttgaaccatgagaagtag |
48254462 |
T |
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| Q |
311 |
gatgccggaaaagctccaacagaacggtgtaggtatcgacatatatgacagaagcatctgagagactttctctggtttgtttcaatgactctttcaacat |
410 |
Q |
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| T |
48254463 |
gatgccggaaaagctccaacagaacggtgtaggtatcgacatatatgacagaagcatctgagatactttctctggtttgtttcaatgactctttcaacat |
48254562 |
T |
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| Q |
411 |
tttgttatagtccactactgcattgttgtaagaaaccatgcatccaaattcgtcaaggtccgaactattatgaggaagttctactaagaatgaagggtag |
510 |
Q |
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| T |
48254563 |
tttgttatagtccactactgcattgttgtaagaaaccatgcatccaaattcgtcaaggtccgaactattatgaggaagttctactaagaatgaaggatag |
48254662 |
T |
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| Q |
511 |
caccctactggtgcaagattaagcaccataaatgttctcccaccaagattatatagctcctacaaatttcagtcagcaaaatttcaagttaataacaatt |
610 |
Q |
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| T |
48254663 |
caccctactggtgcaagattaagcaccataaatgttctcccaccaagattatatagctcctacaaatttcagtcagcaaaatttcaagttaataataatt |
48254762 |
T |
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| Q |
611 |
tt |
612 |
Q |
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| T |
48254763 |
tt |
48254764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 361 - 545
Target Start/End: Complemental strand, 10499723 - 10499539
Alignment:
| Q |
361 |
gaagcatctgagagactttctctggtttgtttcaatgactctttcaacattttgttatagtccactactgcattgttgtaagaaaccatgcatccaaatt |
460 |
Q |
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||||||||||| | ||||| ||| ||||| |||||| ||||||||||| |||||| || || |||| |||||||| |||| || ||||||||| || |
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| T |
10499723 |
gaagcatctgataaactttttctagtttgagtcaatgtctctttcaacaatttgttgtaatcatctacagcattgttataagtaattatgcatccatgtt |
10499624 |
T |
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| Q |
461 |
cgtcaaggtccgaactattatgaggaagttctactaagaatgaagggtagcaccctactggtgcaagattaagcaccataaatgt |
545 |
Q |
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| T |
10499623 |
catctaagtcagaactagtatgaggaagctccaccaaatatccagggtagcatccaactggaccaagatttaataccataaatgt |
10499539 |
T |
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