View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17797_low_30 (Length: 315)

Name: NF17797_low_30
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17797_low_30
NF17797_low_30
[»] chr4 (23 HSPs)
chr4 (15-241)||(23991206-23991432)
chr4 (15-241)||(23984542-23984768)
chr4 (55-237)||(23967654-23967836)
chr4 (242-298)||(42815532-42815588)
chr4 (241-298)||(3078794-3078851)
chr4 (248-298)||(37514025-37514075)
chr4 (232-285)||(52895397-52895450)
chr4 (246-279)||(25221616-25221649)
chr4 (241-298)||(32696675-32696732)
chr4 (241-298)||(33423466-33423523)
chr4 (238-279)||(50831639-50831680)
chr4 (238-294)||(12799845-12799901)
chr4 (237-279)||(22819795-22819837)
chr4 (250-288)||(52895366-52895404)
chr4 (241-294)||(54669471-54669524)
chr4 (240-281)||(5250017-5250058)
chr4 (239-268)||(12375862-12375891)
chr4 (249-298)||(23662211-23662260)
chr4 (238-267)||(33093000-33093029)
chr4 (239-291)||(37066121-37066173)
chr4 (246-279)||(42491220-42491253)
chr4 (241-293)||(51194401-51194453)
chr4 (241-293)||(42959404-42959456)
[»] chr5 (16 HSPs)
chr5 (241-298)||(18695446-18695503)
chr5 (242-298)||(6940037-6940093)
chr5 (241-298)||(9939318-9939375)
chr5 (241-294)||(41175593-41175646)
chr5 (238-298)||(4098739-4098799)
chr5 (242-282)||(36321684-36321724)
chr5 (247-294)||(15952938-15952985)
chr5 (241-279)||(10658991-10659029)
chr5 (246-279)||(8097396-8097429)
chr5 (241-294)||(10649566-10649619)
chr5 (242-294)||(35098893-35098945)
chr5 (238-279)||(43441884-43441925)
chr5 (247-294)||(2224922-2224969)
chr5 (246-298)||(24859246-24859298)
chr5 (242-294)||(32912169-32912221)
chr5 (247-294)||(42267476-42267523)
[»] chr8 (11 HSPs)
chr8 (242-298)||(10644689-10644745)
chr8 (246-293)||(157189-157236)
chr8 (241-298)||(6445307-6445364)
chr8 (240-288)||(22960304-22960352)
chr8 (240-279)||(10592195-10592234)
chr8 (247-294)||(36568092-36568139)
chr8 (241-298)||(24795376-24795433)
chr8 (245-298)||(25018495-25018548)
chr8 (241-294)||(36885375-36885428)
chr8 (242-294)||(30439394-30439446)
chr8 (242-294)||(31597079-31597131)
[»] chr2 (16 HSPs)
chr2 (242-298)||(34134658-34134714)
chr2 (237-298)||(5032051-5032112)
chr2 (248-298)||(2842771-2842821)
chr2 (242-295)||(25086452-25086504)
chr2 (242-294)||(42866881-42866933)
chr2 (240-294)||(31389678-31389732)
chr2 (247-281)||(44254745-44254779)
chr2 (241-293)||(670359-670411)
chr2 (241-294)||(3012739-3012792)
chr2 (241-294)||(23352794-23352847)
chr2 (241-298)||(44050142-44050199)
chr2 (247-294)||(6941070-6941117)
chr2 (245-281)||(14890979-14891015)
chr2 (238-294)||(36211944-36212000)
chr2 (246-298)||(39147893-39147945)
chr2 (246-298)||(44977391-44977443)
[»] chr7 (10 HSPs)
chr7 (242-298)||(1471178-1471234)
chr7 (252-298)||(46829607-46829653)
chr7 (240-294)||(7817767-7817821)
chr7 (241-298)||(33775067-33775124)
chr7 (242-288)||(35600809-35600855)
chr7 (240-294)||(41458727-41458781)
chr7 (241-279)||(49069390-49069428)
chr7 (248-288)||(15565049-15565089)
chr7 (240-272)||(22315470-22315502)
chr7 (246-294)||(36467765-36467813)
[»] chr1 (21 HSPs)
chr1 (242-298)||(46281564-46281620)
chr1 (241-294)||(50881997-50882050)
chr1 (238-294)||(50781454-50781510)
chr1 (246-288)||(41507086-41507128)
chr1 (247-294)||(33358051-33358098)
chr1 (246-288)||(4629640-4629682)
chr1 (240-298)||(11597764-11597822)
chr1 (247-281)||(23621374-23621408)
chr1 (247-281)||(23738153-23738187)
chr1 (253-294)||(45417903-45417944)
chr1 (243-288)||(50239053-50239098)
chr1 (240-281)||(50824885-50824926)
chr1 (242-293)||(3603243-3603294)
chr1 (247-279)||(7101580-7101612)
chr1 (241-269)||(11037337-11037365)
chr1 (237-277)||(19969457-19969497)
chr1 (242-293)||(26585767-26585818)
chr1 (234-293)||(26837584-26837643)
chr1 (241-281)||(29154922-29154962)
chr1 (247-294)||(36494582-36494629)
chr1 (247-279)||(52714794-52714826)
[»] chr3 (12 HSPs)
chr3 (241-298)||(29573242-29573299)
chr3 (242-298)||(27718673-27718729)
chr3 (241-282)||(23183556-23183597)
chr3 (246-295)||(45754770-45754819)
chr3 (241-298)||(46965987-46966044)
chr3 (239-291)||(41670466-41670518)
chr3 (241-294)||(6999301-6999354)
chr3 (246-279)||(9719340-9719373)
chr3 (246-282)||(29373735-29373771)
chr3 (242-293)||(37508386-37508437)
chr3 (246-294)||(38359208-38359256)
chr3 (242-294)||(46852020-46852072)
[»] chr6 (7 HSPs)
chr6 (239-298)||(33656898-33656957)
chr6 (241-298)||(34570481-34570538)
chr6 (242-294)||(3832594-3832646)
chr6 (250-294)||(26832777-26832821)
chr6 (239-294)||(18141186-18141241)
chr6 (239-268)||(25127715-25127744)
chr6 (241-294)||(35213448-35213501)
[»] scaffold0532 (1 HSPs)
scaffold0532 (241-294)||(11095-11148)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 241
Target Start/End: Original strand, 23991206 - 23991432
Alignment:
Q  15 agcaaaggttccaagactgatgccattcagtggtatcgggaggcgtttggatggtaaaccatcgacacaattagttgaacaagcttccactccagttcca 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23991206 agcaaaggttccaagactgatgccattcagtggtatcgggaggcgtttggatggtaaaccgtcgacacaattagttgaacaagcttccactccagttcca 23991305  T
Q  115 aagaagcaacatactgaaaataactccaacaattccaatagaacttcagggaagcttgtttttgggtcaaatgcaaatgcacccaaagttcaaacacagc 214  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  23991306 aagaagcaacatactgataataactcaaacaattccaatagaacttcagggaatcttgtttttggctcaaaggcaaatgcacccaaagttcaaacacagc 23991405  T
Q  215 taaaggtaagtttcatctatagtaata 241  Q
     ||||||||||||||||||||||||||    
T  23991406 caaaggtaagtttcatctatagtaata 23991432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 241
Target Start/End: Original strand, 23984542 - 23984768
Alignment:
Q  15 agcaaaggttccaagactgatgccattcagtggtatcgggaggcgtttggatggtaaaccatcgacacaattagttgaacaagcttccactccagttcca 114  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  23984542 agcaaaggctccaagactgatgccattcagtggtatcgggaggcgtttggatggtaaaccgtcgacacaatcagttgaacaagcttccactccagttcca 23984641  T
Q  115 aagaagcaacatactgaaaataactccaacaattccaatagaacttcagggaagcttgtttttgggtcaaatgcaaatgcacccaaagttcaaacacagc 214  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  23984642 aagaagcaacatactgaaaataactcaaacaattctaatagaacttcagggaagcttgtttttggctcaaaggcaaatgcacccaaagttcaaacacagc 23984741  T
Q  215 taaaggtaagtttcatctatagtaata 241  Q
     ||||||||||||||||||||||||||    
T  23984742 caaaggtaagtttcatctatagtaata 23984768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 55 - 237
Target Start/End: Original strand, 23967654 - 23967836
Alignment:
Q  55 aggcgtttggatggtaaaccatcgacacaattagttgaacaagcttccactccagttccaaagaagcaacatactgaaaataactccaacaattccaata 154  Q
    |||||||||||||||||||| ||| |||||| | | |||||| |||| |||||| ||  |||| ||||||| |||||||||||  |||||| ||| | ||    
T  23967654 aggcgtttggatggtaaaccgtcggcacaatcaatcgaacaaacttctactccaattataaagcagcaacaaactgaaaataaaaccaacagttcgatta 23967753  T
Q  155 gaacttcagggaagcttgtttttgggtcaaatgcaaatgcacccaaagttcaaacacagctaaaggtaagtttcatctatagt 237  Q
    ||||| | |||||||||||||||||||||||||| |||||| |||| ||||||||||||| ||||||||||||||||||||||    
T  23967754 gaactcctgggaagcttgtttttgggtcaaatgccaatgcatccaatgttcaaacacagccaaaggtaagtttcatctatagt 23967836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 42815588 - 42815532
Alignment:
Q  242 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42815588 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaaccataaattt 42815532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 3078794 - 3078851
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||    
T  3078794 agaggtgtcttatttgaacaatcatttgatagacaacttatttgacaaccataaattt 3078851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 37514025 - 37514075
Alignment:
Q  248 tgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    |||||||||||||||||||||||||| || ||||||||||| |||||||||    
T  37514025 tgttatttgaacaaccatttgatagagaatttatttgacaaccataaattt 37514075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 52895450 - 52895397
Alignment:
Q  232 tatagtaatagaggtgtgttatttgaacaaccatttgatagacaacttatttga 285  Q
    |||||| | |||| ||||||||||||||||||||||||| ||||||||||||||    
T  52895450 tatagttaaagagttgtgttatttgaacaaccatttgattgacaacttatttga 52895397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 279
Target Start/End: Original strand, 25221616 - 25221649
Alignment:
Q  246 tgtgttatttgaacaaccatttgatagacaactt 279  Q
    ||||||||||||||||||||||||||||||||||    
T  25221616 tgtgttatttgaacaaccatttgatagacaactt 25221649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 32696675 - 32696732
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    |||||||||||||||||||||||||||| | ||||| |||||  |||| |||||||||    
T  32696675 agaggtgtgttatttgaacaaccatttggttgacaatttattgtacaaccataaattt 32696732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 33423523 - 33423466
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    |||| ||||||||||| |||||||||| || |||||||||||||| || |||||||||    
T  33423523 agagatgtgttatttgcacaaccattttatggacaacttatttgataaccataaattt 33423466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 50831639 - 50831680
Alignment:
Q  238 aatagaggtgtgttatttgaacaaccatttgatagacaactt 279  Q
    ||||||| ||||||||||||||||||||||||| ||||||||    
T  50831639 aatagagttgtgttatttgaacaaccatttgattgacaactt 50831680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 12799901 - 12799845
Alignment:
Q  238 aatagaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    ||||||||  ||||||||||||||||||||| |  ||||||||| ||||||||||||    
T  12799901 aatagaggaatgttatttgaacaaccatttggttaacaacttatgtgacaatcataa 12799845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 279
Target Start/End: Complemental strand, 22819837 - 22819795
Alignment:
Q  237 taatagaggtgtgttatttgaacaaccatttgatagacaactt 279  Q
    ||||||||| |||||||||||||||||||||| | ||||||||    
T  22819837 taatagaggagtgttatttgaacaaccatttggttgacaactt 22819795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 52895404 - 52895366
Alignment:
Q  250 ttatttgaacaaccatttgatagacaacttatttgacaa 288  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  52895404 ttatttgaacaaccatttgattgacaactcatttgacaa 52895366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 54669471 - 54669524
Alignment:
Q  241 agaggtgtgttatttgaacaacc-atttgatagacaacttatttgacaatcataa 294  Q
    ||||| ||||||||||||||||| ||||||| ||||||||||||||||| |||||    
T  54669471 agaggagtgttatttgaacaaccaatttgat-gacaacttatttgacaaccataa 54669524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 5250058 - 5250017
Alignment:
Q  240 tagaggtgtgttatttgaacaaccatttgatagacaacttat 281  Q
    ||||| ||||||||||||||||||||||| | ||||||||||    
T  5250058 tagagttgtgttatttgaacaaccatttgttggacaacttat 5250017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 268
Target Start/End: Original strand, 12375862 - 12375891
Alignment:
Q  239 atagaggtgtgttatttgaacaaccatttg 268  Q
    ||||||||||||||||||||||||||||||    
T  12375862 atagaggtgtgttatttgaacaaccatttg 12375891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 23662211 - 23662260
Alignment:
Q  249 gttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    ||||||||||||||||||| || ||||| |||||||| || |||||||||    
T  23662211 gttatttgaacaaccatttaattgacaatttatttgataaccataaattt 23662260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 33093000 - 33093029
Alignment:
Q  238 aatagaggtgtgttatttgaacaaccattt 267  Q
    ||||||||||||||||||||||||||||||    
T  33093000 aatagaggtgtgttatttgaacaaccattt 33093029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 37066173 - 37066121
Alignment:
Q  239 atagaggtgtgttatttgaacaacc-atttgatagacaacttatttgacaatca 291  Q
    ||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||    
T  37066173 atagaggagtgttatttgaacaaccaatttggt-gacaacttatttgacaatca 37066121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 279
Target Start/End: Complemental strand, 42491253 - 42491220
Alignment:
Q  246 tgtgttatttgaacaaccatttgatagacaactt 279  Q
    ||||||||||||||||||||||||| ||||||||    
T  42491253 tgtgttatttgaacaaccatttgattgacaactt 42491220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 51194453 - 51194401
Alignment:
Q  241 agaggtgtgttatttgaacaacc-atttgatagacaacttatttgacaatcata 293  Q
    ||||| ||||||||||||||||| ||||||| ||||||||||||||||| ||||    
T  51194453 agaggagtgttatttgaacaaccaatttgat-gacaacttatttgacaaccata 51194401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 42959456 - 42959404
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcata 293  Q
    ||||| |||||||||||||||||| || |  || |||||||||||||||||||    
T  42959456 agaggagtgttatttgaacaaccaatttagtgataacttatttgacaatcata 42959404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 18695503 - 18695446
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18695503 agaggtgtgttatttgaacaaccatttgatagacaacttatttgacaaccataaattt 18695446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 6940037 - 6940093
Alignment:
Q  242 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6940037 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaaccataaattt 6940093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 9939318 - 9939375
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  9939318 agaggtgtgttatttgaacaaccatttgatagacaatttatttgacaaccataaattt 9939375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 41175593 - 41175646
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    ||||| |||||||||||||||||||||| | |||||||||| |||||| |||||    
T  41175593 agaggagtgttatttgaacaaccatttggttgacaacttatgtgacaaccataa 41175646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 298
Target Start/End: Complemental strand, 4098799 - 4098739
Alignment:
Q  238 aatagaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    ||||||| |||||||||| |||||||||||  | ||||||||||| |||||| ||||||||    
T  4098799 aatagagctgtgttattttaacaaccattttgttgacaacttattagacaataataaattt 4098739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 36321684 - 36321724
Alignment:
Q  242 gaggtgtgttatttgaacaaccatttgatagacaacttatt 282  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  36321684 gaggtgtgttatttgaacaaccatttgattaacaacttatt 36321724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 15952938 - 15952985
Alignment:
Q  247 gtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    |||||||||||||||||||||| | |||||||||| |||||| |||||    
T  15952938 gtgttatttgaacaaccatttggttgacaacttatgtgacaaccataa 15952985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 10658991 - 10659029
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaactt 279  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  10658991 agaggagtgttatttgaacaaccatttgattgacaactt 10659029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 279
Target Start/End: Complemental strand, 8097429 - 8097396
Alignment:
Q  246 tgtgttatttgaacaaccatttgatagacaactt 279  Q
    ||||||||||||||||||||||||| ||||||||    
T  8097429 tgtgttatttgaacaaccatttgattgacaactt 8097396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 10649619 - 10649566
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    ||||| |||||||||||||||||||||| | |||||||| | |||||| |||||    
T  10649619 agaggagtgttatttgaacaaccatttggttgacaacttttgtgacaaccataa 10649566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 35098893 - 35098945
Alignment:
Q  242 gaggtgtgttatttgaacaacca-tttgatagacaacttatttgacaatcataa 294  Q
    |||| |||||||||||||||||| |||| | |||||||||||||||||||||||    
T  35098893 gaggagtgttatttgaacaaccaatttggt-gacaacttatttgacaatcataa 35098945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 43441925 - 43441884
Alignment:
Q  238 aatagaggtgtgttatttgaacaaccatttgatagacaactt 279  Q
    |||||||| |||||||||||||||||||||| | ||||||||    
T  43441925 aatagaggagtgttatttgaacaaccatttggttgacaactt 43441884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 294
Target Start/End: Complemental strand, 2224969 - 2224922
Alignment:
Q  247 gtgttatttgaacaacca-tttgatagacaacttatttgacaatcataa 294  Q
    |||||||||||||||||| |||||| ||||||||||||||||| |||||    
T  2224969 gtgttatttgaacaaccaatttgat-gacaacttatttgacaaccataa 2224922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 24859246 - 24859298
Alignment:
Q  246 tgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    ||||||||||||| ||  ||||| | |||||||||||||||||||||| ||||    
T  24859246 tgtgttatttgaataattatttggttgacaacttatttgacaatcatatattt 24859298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 32912221 - 32912169
Alignment:
Q  242 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    |||| |||||||||||||||||||||| | |||||||| |  |||||||||||    
T  32912221 gaggagtgttatttgaacaaccatttggttgacaacttttgggacaatcataa 32912169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 294
Target Start/End: Complemental strand, 42267523 - 42267476
Alignment:
Q  247 gtgttatttgaacaacca-tttgatagacaacttatttgacaatcataa 294  Q
    |||||||||||||||||| |||||| ||||||||||||||||| |||||    
T  42267523 gtgttatttgaacaaccaatttgat-gacaacttatttgacaaccataa 42267476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 10644689 - 10644745
Alignment:
Q  242 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10644689 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaaccataaattt 10644745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 157236 - 157189
Alignment:
Q  246 tgtgttatttgaacaaccatttgatagacaacttatttgacaatcata 293  Q
    ||||||||||||||||| ||||||| ||||||||||||||||| ||||    
T  157236 tgtgttatttgaacaacaatttgattgacaacttatttgacaagcata 157189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 6445364 - 6445307
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    |||| |||||||||||||| |||||||||| ||||||||||  ||||| |||||||||    
T  6445364 agagatgtgttatttgaacgaccatttgattgacaacttatgggacaaccataaattt 6445307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 22960304 - 22960352
Alignment:
Q  240 tagaggtgtgttatttgaacaaccatttgatagacaacttatttgacaa 288  Q
    ||||| |||||||||| |||||| ||||||| |||||||||||||||||    
T  22960304 tagagatgtgttatttaaacaacaatttgattgacaacttatttgacaa 22960352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 279
Target Start/End: Original strand, 10592195 - 10592234
Alignment:
Q  240 tagaggtgtgttatttgaacaaccatttgatagacaactt 279  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  10592195 tagagttgtgttatttgaacaaccatttgattgacaactt 10592234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 294
Target Start/End: Complemental strand, 36568139 - 36568092
Alignment:
Q  247 gtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    |||||||||||||||||||||||| ||||||||||  ||||| |||||    
T  36568139 gtgttatttgaacaaccatttgattgacaacttatgggacaaccataa 36568092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 24795433 - 24795376
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    |||||| ||||||||||||||| ||||| | ||||||||||  ||||| |||||||||    
T  24795433 agaggtatgttatttgaacaactatttgtttgacaacttatgagacaaccataaattt 24795376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 25018548 - 25018495
Alignment:
Q  245 gtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    |||||||||||||||||  |||||  |||||| |||| ||||||||||||||||    
T  25018548 gtgtgttatttgaacaattatttgtaagacaatttatatgacaatcataaattt 25018495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 36885375 - 36885428
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    ||||| |||||||||||||||||||||| | ||||||||||  ||||| |||||    
T  36885375 agaggagtgttatttgaacaaccatttggtggacaacttatgggacaaccataa 36885428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 30439394 - 30439446
Alignment:
Q  242 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    |||| |||||||||||||||||||||| | || ||||||| |||||| |||||    
T  30439394 gaggagtgttatttgaacaaccatttggttgataacttatgtgacaaccataa 30439446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 31597131 - 31597079
Alignment:
Q  242 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    |||| |||||||||||||||||||||||| || ||||| |  |||||||||||    
T  31597131 gaggagtgttatttgaacaaccatttgattgataacttttgagacaatcataa 31597079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 34134658 - 34134714
Alignment:
Q  242 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34134658 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaaccataaattt 34134714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 5032112 - 5032051
Alignment:
Q  237 taatagaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  5032112 taatagagatgtgttatttgaacaaccttttgatagacaacttatttgacaaccataaattt 5032051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 2842771 - 2842821
Alignment:
Q  248 tgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    ||||||||||| |||||||||||||||||||||||| |||| |||||||||    
T  2842771 tgttatttgaataaccatttgatagacaacttatttaacaaccataaattt 2842821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 25086504 - 25086452
Alignment:
Q  242 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaa 295  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  25086504 gaggtgtgttatttgaacaac-atttgattgacaacttatttgacaaccataaa 25086452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 42866933 - 42866881
Alignment:
Q  242 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    |||| ||||||||| |||||||||||||| |||||||||  ||||||||||||    
T  42866933 gaggagtgttattttaacaaccatttgatcgacaacttacgtgacaatcataa 42866881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 31389732 - 31389678
Alignment:
Q  240 tagaggtgtgttatttgaacaacc-atttgatagacaacttatttgacaatcataa 294  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||||||| |||||    
T  31389732 tagaggagtgttatttgaacaaccaatttgat-gacaacttatttgacaaccataa 31389678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 44254779 - 44254745
Alignment:
Q  247 gtgttatttgaacaaccatttgatagacaacttat 281  Q
    |||||||||||||||||||||||| ||||||||||    
T  44254779 gtgttatttgaacaaccatttgattgacaacttat 44254745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 670359 - 670411
Alignment:
Q  241 agaggtgtgttatttgaacaacc-atttgatagacaacttatttgacaatcata 293  Q
    ||||| ||||||||||||||||| ||||||| ||||||||||||||||| ||||    
T  670359 agaggagtgttatttgaacaaccaatttgat-gacaacttatttgacaaccata 670411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 3012739 - 3012792
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    ||||| |||||||||||||||||||||| | ||||||||||  ||||| |||||    
T  3012739 agaggagtgttatttgaacaaccatttggttgacaacttatgggacaaccataa 3012792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 23352794 - 23352847
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    ||||| |||||||||||||||||||||| | ||||||||||  ||||| |||||    
T  23352794 agaggagtgttatttgaacaaccatttggttgacaacttatgggacaaccataa 23352847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 44050199 - 44050142
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    ||||||||||||||||||||||||||||   |||||||| |  ||||| |||||||||    
T  44050199 agaggtgtgttatttgaacaaccatttgtgcgacaacttttgagacaaccataaattt 44050142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 294
Target Start/End: Complemental strand, 6941117 - 6941070
Alignment:
Q  247 gtgttatttgaacaacca-tttgatagacaacttatttgacaatcataa 294  Q
    |||||||||||||||||| |||||| || ||||||||||||||||||||    
T  6941117 gtgttatttgaacaaccaatttgat-gataacttatttgacaatcataa 6941070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 14890979 - 14891015
Alignment:
Q  245 gtgtgttatttgaacaaccatttgatagacaacttat 281  Q
    ||||||||||||||||||||||||||  |||||||||    
T  14890979 gtgtgttatttgaacaaccatttgattaacaacttat 14891015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 36211944 - 36212000
Alignment:
Q  238 aatagaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    |||||| | |||||||||||||||||||||| | || || |||| ||||||||||||    
T  36211944 aatagatgagtgttatttgaacaaccatttggttgataaattatgtgacaatcataa 36212000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 39147945 - 39147893
Alignment:
Q  246 tgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    |||||||||||||||||||||| |  |||||||| |  |||||||||||||||    
T  39147945 tgtgttatttgaacaaccattttaatgacaacttttgggacaatcataaattt 39147893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 44977391 - 44977443
Alignment:
Q  246 tgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    ||||||||||||||||||||||||  || |||||||  ||||| |||||||||    
T  44977391 tgtgttatttgaacaaccatttgaacgaaaacttatgagacaaccataaattt 44977443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 1471178 - 1471234
Alignment:
Q  242 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  1471178 gaggtgtgttatttgaacaactatttgatagacaacttatttgacaaccataaattt 1471234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 46829653 - 46829607
Alignment:
Q  252 atttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  46829653 atttgaacaaccatttgatagacaacttatttgacaaccataaattt 46829607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 7817821 - 7817767
Alignment:
Q  240 tagaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    |||||| |||||||||||||||||||||| | |||||||||| |||||| |||||    
T  7817821 tagaggagtgttatttgaacaaccatttggttgacaacttatgtgacaaccataa 7817767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 33775124 - 33775067
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    |||| |||||||||||||||| | |||||| ||||||||||||||||| ||| |||||    
T  33775124 agagatgtgttatttgaacaatcgtttgattgacaacttatttgacaaccatgaattt 33775067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 288
Target Start/End: Complemental strand, 35600855 - 35600809
Alignment:
Q  242 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaa 288  Q
    ||||||||||||||||||||||||||||  |||||||| | ||||||    
T  35600855 gaggtgtgttatttgaacaaccatttgagtgacaacttttgtgacaa 35600809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 41458781 - 41458727
Alignment:
Q  240 tagaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    |||||| |||||||||||||||||||||| | |||||||||  |||||| |||||    
T  41458781 tagaggagtgttatttgaacaaccatttggttgacaacttacatgacaaccataa 41458727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Complemental strand, 49069428 - 49069390
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaactt 279  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  49069428 agagttgtgttatttgaacaaccatttgattgacaactt 49069390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 15565089 - 15565049
Alignment:
Q  248 tgttatttgaacaaccatttgatagacaacttatttgacaa 288  Q
    |||||||| |||||||||||| | |||||||||||||||||    
T  15565089 tgttatttaaacaaccatttggttgacaacttatttgacaa 15565049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 22315502 - 22315470
Alignment:
Q  240 tagaggtgtgttatttgaacaaccatttgatag 272  Q
    ||||| |||||||||||||||||||||||||||    
T  22315502 tagagttgtgttatttgaacaaccatttgatag 22315470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 36467813 - 36467765
Alignment:
Q  246 tgtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    ||||||||||||| ||| |||||||  ||||||||||| ||||||||||    
T  36467813 tgtgttatttgaataactatttgattaacaacttatttaacaatcataa 36467765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 46281620 - 46281564
Alignment:
Q  242 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  46281620 gaggtgtgttatttgaacaaccatttgatagacaacatatttgacaaccataaattt 46281564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 50881997 - 50882050
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    ||||| |||||||||||||||||||||||| ||||| |||| ||||||||||||    
T  50881997 agaggagtgttatttgaacaaccatttgattgacaatttatgtgacaatcataa 50882050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 50781454 - 50781510
Alignment:
Q  238 aatagaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    |||||||| |||||||||||||||||||||| |||||||||| |  |||||||||||    
T  50781454 aatagaggagtgttatttgaacaaccatttggtagacaacttttaggacaatcataa 50781510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 41507086 - 41507128
Alignment:
Q  246 tgtgttatttgaacaaccatttgatagacaacttatttgacaa 288  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  41507086 tgtgttatttgaacaaccatttggttgacaacttatttgacaa 41507128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 33358051 - 33358098
Alignment:
Q  247 gtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    |||||||||||||||||||||| | |||||||||| |||||| |||||    
T  33358051 gtgttatttgaacaaccatttggttgacaacttatgtgacaaccataa 33358098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 4629640 - 4629682
Alignment:
Q  246 tgtgttatttgaacaaccatttgatagacaacttatttgacaa 288  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||    
T  4629640 tgtgttatttgaacaactattagattgacaacttatttgacaa 4629682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 298
Target Start/End: Complemental strand, 11597822 - 11597764
Alignment:
Q  240 tagaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    ||||||||||||||||||||| ||||||| | ||||||||||  ||||| |||| ||||    
T  11597822 tagaggtgtgttatttgaacatccatttgcttgacaacttatgggacaaccatagattt 11597764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 23621374 - 23621408
Alignment:
Q  247 gtgttatttgaacaaccatttgatagacaacttat 281  Q
    |||||||||||||||||||||||| ||||||||||    
T  23621374 gtgttatttgaacaaccatttgattgacaacttat 23621408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 23738153 - 23738187
Alignment:
Q  247 gtgttatttgaacaaccatttgatagacaacttat 281  Q
    |||||||||||||||||||||||| ||||||||||    
T  23738153 gtgttatttgaacaaccatttgattgacaacttat 23738187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 294
Target Start/End: Complemental strand, 45417944 - 45417903
Alignment:
Q  253 tttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    |||||||||||||||||| |||||||||| |||||| |||||    
T  45417944 tttgaacaaccatttgattgacaacttatgtgacaaccataa 45417903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 50239053 - 50239098
Alignment:
Q  243 aggtgtgttatttgaacaaccatttgatagacaacttatttgacaa 288  Q
    |||||||||||||||||||||||||||  |||||||| | ||||||    
T  50239053 aggtgtgttatttgaacaaccatttgagtgacaacttttgtgacaa 50239098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 50824926 - 50824885
Alignment:
Q  240 tagaggtgtgttatttgaacaaccatttgatagacaacttat 281  Q
    |||||| |||||||||||||||||||||| | ||||||||||    
T  50824926 tagaggagtgttatttgaacaaccatttggtggacaacttat 50824885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 3603294 - 3603243
Alignment:
Q  242 gaggtgtgttatttgaacaacc-atttgatagacaacttatttgacaatcata 293  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||||||| ||||    
T  3603294 gaggagtgttatttgaacaaccaatttgat-gacaacttatttgacaaccata 3603243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 7101580 - 7101612
Alignment:
Q  247 gtgttatttgaacaaccatttgatagacaactt 279  Q
    |||||||||||||||||||||||| ||||||||    
T  7101580 gtgttatttgaacaaccatttgattgacaactt 7101612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 11037365 - 11037337
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttga 269  Q
    |||||||||||||||||||||||||||||    
T  11037365 agaggtgtgttatttgaacaaccatttga 11037337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 19969457 - 19969497
Alignment:
Q  237 taatagaggtgtgttatttgaacaaccatttgatagacaac 277  Q
    ||||||||| |||||||||||||||||||||| | ||||||    
T  19969457 taatagaggagtgttatttgaacaaccatttggttgacaac 19969497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 26585767 - 26585818
Alignment:
Q  242 gaggtgtgttatttgaacaacc-atttgatagacaacttatttgacaatcata 293  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||||||| ||||    
T  26585767 gaggagtgttatttgaacaaccaatttgat-gacaacttatttgacaaccata 26585818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 26837643 - 26837584
Alignment:
Q  234 tagtaatagaggtgtgttatttgaacaacc-atttgatagacaacttatttgacaatcata 293  Q
    ||||| |||||| ||||||||||||||||| ||||| | ||||||||||||||||| ||||    
T  26837643 tagtattagaggagtgttatttgaacaaccaatttggt-gacaacttatttgacaaccata 26837584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 29154962 - 29154922
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaacttat 281  Q
    ||||| |||||||||||||||||||||| | ||||||||||    
T  29154962 agaggagtgttatttgaacaaccatttggttgacaacttat 29154922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 294
Target Start/End: Complemental strand, 36494629 - 36494582
Alignment:
Q  247 gtgttatttgaacaacca-tttgatagacaacttatttgacaatcataa 294  Q
    |||||||||||||||||| |||| | |||||||||||||||||||||||    
T  36494629 gtgttatttgaacaaccaatttggt-gacaacttatttgacaatcataa 36494582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 52714794 - 52714826
Alignment:
Q  247 gtgttatttgaacaaccatttgatagacaactt 279  Q
    |||||||||||||||||||||||| ||||||||    
T  52714794 gtgttatttgaacaaccatttgattgacaactt 52714826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 29573242 - 29573299
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  29573242 agaggtatgttatttgaacaaccatttgatagacaatttatttgacaaccataaattt 29573299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 27718673 - 27718729
Alignment:
Q  242 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||    
T  27718673 gaggtgtgttatttgaacaaccatttgatagccaacatatttgacaaccataaattt 27718729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 23183597 - 23183556
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaacttatt 282  Q
    ||||| |||||||||||||||||||||||| |||||||||||    
T  23183597 agaggagtgttatttgaacaaccatttgattgacaacttatt 23183556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 45754819 - 45754770
Alignment:
Q  246 tgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaa 295  Q
    ||||||||||||||||||||||||| || |||||||| ||||| ||||||    
T  45754819 tgtgttatttgaacaaccatttgattgataacttattagacaaccataaa 45754770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 46965987 - 46966044
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    ||||||||||||||||||||||||||||   |||||||| |  |||||||||||||||    
T  46965987 agaggtgtgttatttgaacaaccatttgtgtgacaacttttcggacaatcataaattt 46966044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 41670466 - 41670518
Alignment:
Q  239 atagaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatca 291  Q
    |||||| ||||||||||||||||||||||||  |||||||| | |||||||||    
T  41670466 atagagatgtgttatttgaacaaccatttgagtgacaacttttgtgacaatca 41670518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 6999354 - 6999301
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    ||||| |||||||||||||||||||||| | ||||||||||  ||||| |||||    
T  6999354 agaggagtgttatttgaacaaccatttggttgacaacttatgggacaaccataa 6999301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 279
Target Start/End: Original strand, 9719340 - 9719373
Alignment:
Q  246 tgtgttatttgaacaaccatttgatagacaactt 279  Q
    ||||||||||||||||||||||||| ||||||||    
T  9719340 tgtgttatttgaacaaccatttgattgacaactt 9719373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 29373735 - 29373771
Alignment:
Q  246 tgtgttatttgaacaaccatttgatagacaacttatt 282  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  29373735 tgtgttatttgaacaaccacttgattgacaacttatt 29373771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 37508386 - 37508437
Alignment:
Q  242 gaggtgtgttatttgaacaacc-atttgatagacaacttatttgacaatcata 293  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||||||| ||||    
T  37508386 gaggagtgttatttgaacaaccaatttgat-gacaacttatttgacaaccata 37508437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 38359208 - 38359256
Alignment:
Q  246 tgtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    ||||||||||||||||||||||||| || ||||| || ||||| |||||    
T  38359208 tgtgttatttgaacaaccatttgattgagaactttttggacaaccataa 38359256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 46852020 - 46852072
Alignment:
Q  242 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    |||| |||||||||||||||||||||| | |||||||| |  |||||||||||    
T  46852020 gaggagtgttatttgaacaaccatttggttgacaacttttgggacaatcataa 46852072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 298
Target Start/End: Complemental strand, 33656957 - 33656898
Alignment:
Q  239 atagaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    |||||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  33656957 atagagatgtgttatttgaacaaccatttgattgacaatttatttgacaaccataaattt 33656898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 34570481 - 34570538
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataaattt 298  Q
    |||||||||||||||||| |||| |||||||||||| ||||||||||| |||||||||    
T  34570481 agaggtgtgttatttgaataaccttttgatagacaatttatttgacaaccataaattt 34570538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 3832646 - 3832594
Alignment:
Q  242 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    |||| |||||||||||||||||||||||| ||||||||||  ||||| |||||    
T  3832646 gaggagtgttatttgaacaaccatttgattgacaacttatgggacaaccataa 3832594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 26832821 - 26832777
Alignment:
Q  250 ttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    ||||||||||||||||||||| |||||||||| |||||| |||||    
T  26832821 ttatttgaacaaccatttgattgacaacttatgtgacaaccataa 26832777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 294
Target Start/End: Original strand, 18141186 - 18141241
Alignment:
Q  239 atagaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    ||||||| |||||||||||||||||||||| | |||||||| | |||||| |||||    
T  18141186 atagaggagtgttatttgaacaaccatttggttgacaacttttgtgacaaccataa 18141241  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 268
Target Start/End: Original strand, 25127715 - 25127744
Alignment:
Q  239 atagaggtgtgttatttgaacaaccatttg 268  Q
    ||||||||||||||||||||||||||||||    
T  25127715 atagaggtgtgttatttgaacaaccatttg 25127744  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 35213448 - 35213501
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    ||||| |||||||||||||||||||||| | |||||||| |  |||||||||||    
T  35213448 agaggagtgttatttgaacaaccatttggttgacaacttttgggacaatcataa 35213501  T

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Target: scaffold0532 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 11148 - 11095
Alignment:
Q  241 agaggtgtgttatttgaacaaccatttgatagacaacttatttgacaatcataa 294  Q
    ||||| ||||||||||||||||| |||| | |||||||||| ||||||||||||    
T  11148 agaggagtgttatttgaacaaccttttggttgacaacttatgtgacaatcataa 11095  T

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