View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17797_low_33 (Length: 306)
Name: NF17797_low_33
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_low_33 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 17846248 - 17845957
Alignment:
| Q |
1 |
gtttttgcaaagcataggaaagattacctttagaagcattttgtatgcctccaataaccgattggcagctggtccaaacccatgtagttgtggaacctcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17846248 |
gtttttgcaaagcataggaaagattacctttagaagcattttgtatgcctccaataaccgattggcagctggtccaaacccatgtagttgtggaacctcc |
17846149 |
T |
|
| Q |
101 |
atcatatgtgtccatggacgaatttcctacacaataacaatcttttataagcttccccaaatattgcgcgcgtgtgtaggggtgatgggggtggcatatc |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
17846148 |
atcatatgtgtccatggacgtatttcctacacaacaacaatcttttataagcttccccaaatattgtgcgtgtgtgtaggggtgatgggggtggcatatc |
17846049 |
T |
|
| Q |
201 |
aagtgaaagaattgtcctataacgagtaaagctaataacatccatgcactcccacatgaattgtcaagattgaaaactactcaaagatcaca |
292 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17846048 |
aagtgaaagaattgtcgtataacgagtgaagctaataacgtccatgcactcccacatgaattgtcaagattgaaaaccactcaaagatcaca |
17845957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 2 - 292
Target Start/End: Complemental strand, 20413482 - 20413191
Alignment:
| Q |
2 |
tttttgcaaagcataggaaagattacctttagaagcattttgtatgcctccaataaccgattggcagctggtccaaacccatgtagttgtggaacctcca |
101 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20413482 |
tttttgccaaccataggaaagattacctttagaagcattttgtatgcctccaataaccgattggcagctggtccaaacccatgtagttgtggaacctcca |
20413383 |
T |
|
| Q |
102 |
tcatatgtgtccatggacgaatttcctacacaataacaatcttttataagcttccccaaatattgcgcgcgtgtgtaggggtgatgggggt-ggcatatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||| |||||| |||||||||||||||||| ||| | || |
|
|
| T |
20413382 |
tcatatgtgtccatggacgaatttcctacacaacaataatcttttataagcttcgccaaatattgtgcgcgtatgtaggggtgatgggggtgggcttgtc |
20413283 |
T |
|
| Q |
201 |
aagtgaaagaattgtcctataacgagtaaagctaataacatccatgcactcccacatgaattgtcaagattgaaaactactcaaagatcaca |
292 |
Q |
| |
|
|||||| |||||| || |||||||||||||||||||| |||||||| |||||||||||||| |||||| ||||| ||||| ||||||||| |
|
|
| T |
20413282 |
aagtgacagaattatcgtataacgagtaaagctaatagtgtccatgcaatcccacatgaattgacaagatcgaaaattactcgaagatcaca |
20413191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 2 - 292
Target Start/End: Complemental strand, 5310622 - 5310331
Alignment:
| Q |
2 |
tttttgcaaagcataggaaagattacctttagaagcattttgtatgcctccaataaccgattggcagctggtccaaacccatgtagttgtggaacctcca |
101 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5310622 |
tttttgccaaccataggaaagattacctttagaagcattttgtatgcctccaataaccgattggcagctggtccaaacccatgtagttgtggaacctcca |
5310523 |
T |
|
| Q |
102 |
tcatatgtgtccatggacgaatttcctacacaataacaatcttttataagcttccccaaatattgcgcgcgtgtgtaggggtgatgggggt-ggcatatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||| || ||| |||||||||||||||||| ||| | || |
|
|
| T |
5310522 |
tcatatgtgtccatggacgaatttcctacacaacaataatcttttataagcttcgccaaatattgtgcacgtatgtaggggtgatgggggtgggcttgtc |
5310423 |
T |
|
| Q |
201 |
aagtgaaagaattgtcctataacgagtaaagctaataacatccatgcactcccacatgaattgtcaagattgaaaactactcaaagatcaca |
292 |
Q |
| |
|
|||||| |||||| || |||||||||||||||||||| |||||||| |||||||||||||| |||||| ||||| ||||| ||||||||| |
|
|
| T |
5310422 |
aagtgacagaattatcgtataacgagtaaagctaatagtgtccatgcaatcccacatgaattgacaagatcgaaaattactcgaagatcaca |
5310331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 38640415 - 38640475
Alignment:
| Q |
26 |
acctttagaagcattttgtatgcctccaataaccgattggcagctggtccaaacccatgta |
86 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||||| |||||||||||||||| ||||||||| |
|
|
| T |
38640415 |
acctttataagcactttgtatgccttcaataacttattggcagctggtccagacccatgta |
38640475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 32552570 - 32552704
Alignment:
| Q |
24 |
ttacctttagaagcattttgtatgcctccaataaccgattggcagctggtccaaacccatgtagttgtggaacctccatcatatgtgtccatggacgaat |
123 |
Q |
| |
|
||||||| | |||||||||||| || ||||||| |||||||||||||||||| || ||||| |||||||||||||||||||| || |||||||| || || |
|
|
| T |
32552570 |
ttaccttcaaaagcattttgtaagcttccaatagccgattggcagctggtccgaatccatgaagttgtggaacctccatcatgtgcgtccatggccggat |
32552669 |
T |
|
| Q |
124 |
ttcctacacaataacaatcttttataagcttcccc |
158 |
Q |
| |
|
||||||||||| | |||| ||||||| ||||||| |
|
|
| T |
32552670 |
ttcctacacaaaagcaattgtttataatcttcccc |
32552704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University