View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17797_low_34 (Length: 306)
Name: NF17797_low_34
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_low_34 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 25254147 - 25254457
Alignment:
| Q |
1 |
taagacataaaaagaagaaaaaatatatataagaacgaatctaacttcgtcaacaccaaacagcatacttagcaaacaatccnnnnnnn-----ggctta |
95 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
25254147 |
taagacataaaaagaagaaaaagtatatataagaacgaatctaacttcgtccacaccaaacagcatacttagcaaacaatccaaaaaaaaaaaaggctta |
25254246 |
T |
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| Q |
96 |
cttgattatagtatgttggcatccatgtaagaagaatgaaagttccccagttgtggcaaaagtgggacacaatcagggcccagactggtggtttcgacaa |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25254247 |
cttgattatagtatgttggcatccatgtaagaagaatgaaagttccccagttgtggcaaaagtgggacacaatcagggcccagaccggtggtttcgacaa |
25254346 |
T |
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| Q |
196 |
aattaatccccaaggtatttccttcacaggttccttggaaaaaccatttgtagcaatcaacttcttttcttctggccgcatttcaggatcatcaagtggt |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25254347 |
aattaatccccaaggtatttccttcacaggttccttggagaaaccatttgtagcaatcaacttcttttcttctggccgcatttcaggatcatcaagtggc |
25254446 |
T |
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| Q |
296 |
gaactatgtgc |
306 |
Q |
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||||||||||| |
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| T |
25254447 |
gaactatgtgc |
25254457 |
T |
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