View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17797_low_35 (Length: 280)

Name: NF17797_low_35
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17797_low_35
NF17797_low_35
[»] chr5 (19 HSPs)
chr5 (1-144)||(25484910-25485053)
chr5 (179-225)||(28446205-28446251)
chr5 (179-225)||(6130321-6130367)
chr5 (180-225)||(40276086-40276131)
chr5 (182-225)||(36798377-36798420)
chr5 (179-225)||(3333758-3333804)
chr5 (180-225)||(19340828-19340873)
chr5 (180-225)||(30603680-30603725)
chr5 (179-225)||(2974834-2974880)
chr5 (179-225)||(9852986-9853032)
chr5 (179-225)||(12406108-12406153)
chr5 (191-225)||(16132930-16132964)
chr5 (191-225)||(32391797-32391831)
chr5 (180-225)||(21066541-21066586)
chr5 (191-224)||(22300814-22300847)
chr5 (179-220)||(31080686-31080727)
chr5 (180-225)||(37897785-37897830)
chr5 (181-225)||(2974702-2974746)
chr5 (199-227)||(3999172-3999200)
[»] chr2 (19 HSPs)
chr2 (179-226)||(35718856-35718903)
chr2 (179-225)||(6510201-6510247)
chr2 (179-225)||(34679294-34679340)
chr2 (179-225)||(4576610-4576656)
chr2 (179-225)||(6592935-6592981)
chr2 (179-225)||(15023040-15023086)
chr2 (183-225)||(34100811-34100853)
chr2 (179-225)||(39918643-39918689)
chr2 (180-225)||(32969726-32969771)
chr2 (179-223)||(35718712-35718756)
chr2 (191-226)||(4925647-4925682)
chr2 (179-225)||(5470394-5470440)
chr2 (179-225)||(19206207-19206253)
chr2 (191-225)||(31827734-31827768)
chr2 (179-225)||(34761061-34761107)
chr2 (179-225)||(36195657-36195702)
chr2 (179-225)||(37431739-37431785)
chr2 (179-225)||(43028995-43029041)
chr2 (179-225)||(44297628-44297674)
[»] chr4 (22 HSPs)
chr4 (179-225)||(23759627-23759673)
chr4 (180-225)||(53924814-53924859)
chr4 (179-225)||(6614912-6614958)
chr4 (183-222)||(21597472-21597511)
chr4 (179-225)||(2654021-2654067)
chr4 (179-221)||(10059750-10059792)
chr4 (179-225)||(16292469-16292515)
chr4 (183-225)||(18937311-18937353)
chr4 (179-225)||(21597603-21597649)
chr4 (179-225)||(14060821-14060867)
chr4 (191-225)||(20737435-20737469)
chr4 (179-225)||(21957668-21957714)
chr4 (179-225)||(27978900-27978946)
chr4 (179-221)||(29697727-29697769)
chr4 (179-225)||(35393870-35393916)
chr4 (179-224)||(2837102-2837147)
chr4 (180-225)||(6637133-6637178)
chr4 (179-224)||(10059899-10059944)
chr4 (179-224)||(21871447-21871491)
chr4 (179-224)||(21927308-21927352)
chr4 (179-223)||(1420601-1420645)
chr4 (180-220)||(34771338-34771378)
[»] chr1 (22 HSPs)
chr1 (179-220)||(16545766-16545807)
chr1 (180-225)||(1096650-1096695)
chr1 (179-224)||(3377714-3377759)
chr1 (179-225)||(8301546-8301592)
chr1 (179-221)||(14979006-14979048)
chr1 (179-225)||(17692887-17692933)
chr1 (179-225)||(23891726-23891772)
chr1 (179-225)||(30849287-30849333)
chr1 (179-222)||(12961049-12961092)
chr1 (180-223)||(48319609-48319652)
chr1 (179-218)||(50401580-50401619)
chr1 (180-226)||(6320631-6320677)
chr1 (179-225)||(12960912-12960958)
chr1 (179-225)||(15659047-15659093)
chr1 (179-225)||(17760891-17760937)
chr1 (179-221)||(23220767-23220809)
chr1 (179-225)||(39642267-39642313)
chr1 (179-225)||(41997706-41997752)
chr1 (180-225)||(6569594-6569639)
chr1 (144-225)||(39642409-39642491)
chr1 (180-225)||(45739137-45739182)
chr1 (179-223)||(7579866-7579909)
[»] chr7 (16 HSPs)
chr7 (179-223)||(36580340-36580384)
chr7 (179-224)||(8074076-8074121)
chr7 (179-223)||(3247377-3247421)
chr7 (179-227)||(15029258-15029306)
chr7 (179-222)||(23746093-23746136)
chr7 (179-225)||(4049923-4049969)
chr7 (179-221)||(5172729-5172771)
chr7 (179-225)||(15348158-15348204)
chr7 (179-225)||(20185118-20185164)
chr7 (179-225)||(28472580-28472625)
chr7 (180-225)||(17876359-17876404)
chr7 (182-225)||(35250321-35250364)
chr7 (179-224)||(28785824-28785869)
chr7 (179-224)||(40872233-40872278)
chr7 (179-223)||(18186506-18186550)
chr7 (183-223)||(18504444-18504484)
[»] scaffold0062 (1 HSPs)
scaffold0062 (179-225)||(46143-46189)
[»] chr6 (15 HSPs)
chr6 (179-221)||(2853494-2853536)
chr6 (179-225)||(33401256-33401302)
chr6 (180-225)||(2840857-2840902)
chr6 (179-225)||(238994-239040)
chr6 (179-225)||(3579661-3579707)
chr6 (179-225)||(12766416-12766462)
chr6 (179-225)||(28011327-28011373)
chr6 (183-220)||(26601666-26601703)
chr6 (179-225)||(1377409-1377455)
chr6 (179-225)||(1385157-1385203)
chr6 (179-225)||(10727257-10727303)
chr6 (179-225)||(10727395-10727441)
chr6 (195-225)||(11351845-11351875)
chr6 (179-225)||(17248843-17248888)
chr6 (183-224)||(3812949-3812990)
[»] chr3 (26 HSPs)
chr3 (179-225)||(44436455-44436501)
chr3 (179-225)||(44585854-44585900)
chr3 (180-225)||(51315562-51315607)
chr3 (179-225)||(15978893-15978939)
chr3 (179-225)||(25154382-25154428)
chr3 (179-225)||(38958046-38958092)
chr3 (179-225)||(46226891-46226937)
chr3 (183-225)||(54719061-54719103)
chr3 (180-225)||(4474271-4474316)
chr3 (180-225)||(8024842-8024887)
chr3 (179-223)||(12759575-12759618)
chr3 (182-225)||(3192983-3193026)
chr3 (179-225)||(17773237-17773282)
chr3 (179-225)||(19074538-19074583)
chr3 (179-225)||(19404463-19404509)
chr3 (191-225)||(25902480-25902514)
chr3 (179-221)||(28204544-28204586)
chr3 (179-225)||(28712663-28712709)
chr3 (179-225)||(28944167-28944213)
chr3 (179-225)||(44436599-44436645)
chr3 (179-225)||(51315685-51315731)
chr3 (179-225)||(54464364-54464410)
chr3 (180-221)||(86768-86809)
chr3 (183-224)||(47189667-47189708)
chr3 (179-227)||(3192839-3192887)
chr3 (182-226)||(14992691-14992735)
[»] chr8 (14 HSPs)
chr8 (179-223)||(41487267-41487311)
chr8 (179-225)||(30539192-30539238)
chr8 (179-225)||(41487411-41487457)
chr8 (181-225)||(17070975-17071019)
chr8 (181-225)||(17577253-17577297)
chr8 (179-222)||(22192502-22192545)
chr8 (179-225)||(29657770-29657816)
chr8 (179-225)||(30539055-30539101)
chr8 (179-225)||(37813292-37813338)
chr8 (180-225)||(20853580-20853625)
chr8 (192-225)||(37263441-37263474)
chr8 (189-225)||(14880412-14880448)
chr8 (189-221)||(37535862-37535894)
chr8 (180-220)||(45457197-45457237)
[»] scaffold0137 (1 HSPs)
scaffold0137 (179-225)||(20121-20167)
[»] scaffold0067 (1 HSPs)
scaffold0067 (179-220)||(4220-4261)
[»] scaffold0016 (1 HSPs)
scaffold0016 (179-224)||(203255-203300)
[»] scaffold0015 (1 HSPs)
scaffold0015 (179-224)||(77063-77108)
[»] scaffold0250 (1 HSPs)
scaffold0250 (183-219)||(3644-3680)
[»] scaffold0025 (1 HSPs)
scaffold0025 (179-223)||(19106-19150)
[»] scaffold0809 (1 HSPs)
scaffold0809 (179-222)||(2819-2862)
[»] scaffold0041 (1 HSPs)
scaffold0041 (179-224)||(94004-94049)


Alignment Details
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 25485053 - 25484910
Alignment:
Q  1 gctttcatttcataatttataactccaactcaatttatattttgcaacgtttcttcgacaaataatgggattctcgcaggatcaaaagttgcaataagac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||| ||  ||||||||||||||||||||    
T  25485053 gctttcatttcataatttataactccaactcaatttatattttgcaatgtttcttcaacaaatgatgggattctcacataatcaaaagttgcaataagac 25484954  T
Q  101 tttgatattgcatggaaaaatatttagtggagacatattaagaa 144  Q
    |||||||||||||||| || | ||||||||||||||||||||||    
T  25484953 tttgatattgcatggagaattgtttagtggagacatattaagaa 25484910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 28446251 - 28446205
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  28446251 ctacaaaaccgtcccctaagttttgcaactgtagcagttttggcccc 28446205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 6130321 - 6130367
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||    
T  6130321 ctacaaaaccatcccctaagttttgcaactgtagcagttttggcccc 6130367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 40276086 - 40276131
Alignment:
Q  180 tacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||    
T  40276086 tacaaaatcgtcccctaagttttgcaactgtagcagttttggcccc 40276131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 36798420 - 36798377
Alignment:
Q  182 caaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||| ||||||| |||||||||||||||||||||||||||    
T  36798420 caaaaccgccccctaagttttgcaactgtagcagttttggcccc 36798377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 3333758 - 3333804
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||||||||| |||| |||||||| ||||||||||||||||||    
T  3333758 ctacaaaaccgtcctctaagttttgcaaatgtagcagttttggcccc 3333804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 19340828 - 19340873
Alignment:
Q  180 tacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||| || ||||||| |||||||||||||||||||||||||||    
T  19340828 tacaaaatcgccccctaagttttgcaactgtagcagttttggcccc 19340873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 30603680 - 30603725
Alignment:
Q  180 tacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||| | ||||||| |||||||||||||||||||||||||||    
T  30603680 tacaaaactgccccctaagttttgcaactgtagcagttttggcccc 30603725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 2974880 - 2974834
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||| ||||| ||||||| ||||||| |||||||||||||||||||    
T  2974880 ctacagaaccgccccctaagttttgcacctgtagcagttttggcccc 2974834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 9853032 - 9852986
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||| |||||| ||||||| ||||||||||||| |||||||||||||    
T  9853032 ctactaaaccgccccctaagttttgcaactgtatcagttttggcccc 9852986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 12406108 - 12406153
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||||||| ||||||||||||| |||||||||||||    
T  12406108 ctacaaaaccgccccctaagttttgcaactgta-cagttttggcccc 12406153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 225
Target Start/End: Complemental strand, 16132964 - 16132930
Alignment:
Q  191 cccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||||||||| ||||||||||||||||||||    
T  16132964 cccctaaattttgccactgtagcagttttggcccc 16132930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 225
Target Start/End: Original strand, 32391797 - 32391831
Alignment:
Q  191 cccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||| |||||||||||||||||||||||||||    
T  32391797 cccctaagttttgcaactgtagcagttttggcccc 32391831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 21066586 - 21066541
Alignment:
Q  180 tacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||  || ||| |||||||||||||||||||||||||||    
T  21066586 tacaaaaccgctccttaagttttgcaactgtagcagttttggcccc 21066541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 22300847 - 22300814
Alignment:
Q  191 cccctaaattttgcaactgtagcagttttggccc 224  Q
    ||||||| ||||||||||||||||||||||||||    
T  22300847 cccctaagttttgcaactgtagcagttttggccc 22300814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 31080727 - 31080686
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttg 220  Q
    ||||||||||| || |||| ||||||||||||||||||||||    
T  31080727 ctacaaaaccgccctctaagttttgcaactgtagcagttttg 31080686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 37897785 - 37897830
Alignment:
Q  180 tacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||||| ||||||| |||||||| |||||| |||||||||||    
T  37897785 tacaaaaccgccccctaagttttgcaattgtagctgttttggcccc 37897830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 2974702 - 2974746
Alignment:
Q  181 acaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||| ||||||| ||||||| |||| ||||||||||||||    
T  2974702 acaaaaccgccccctaagttttgcatctgtggcagttttggcccc 2974746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 3999172 - 3999200
Alignment:
Q  199 ttttgcaactgtagcagttttggcccctc 227  Q
    |||||||||||||||||||||||||||||    
T  3999172 ttttgcaactgtagcagttttggcccctc 3999200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 35718903 - 35718856
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccct 226  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35718903 ctacaaaaccgtcccctaagttttgcaactgtagcagttttggcccct 35718856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 6510247 - 6510201
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||    
T  6510247 ctacaaaaccgccccctaagttttgcaactgtagcagttttggcccc 6510201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 34679340 - 34679294
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||    
T  34679340 ctacaaaaccgccccctaagttttgcaactgtagcagttttggcccc 34679294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 4576610 - 4576656
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||| |||||| ||| |||||||||||||||||||||||||||    
T  4576610 ctacaaaatcgtcccataagttttgcaactgtagcagttttggcccc 4576656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 6592981 - 6592935
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||| | ||||||| |||||||||||||||||||||||||||    
T  6592981 ctacaaaactgccccctaagttttgcaactgtagcagttttggcccc 6592935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 15023086 - 15023040
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  15023086 ctacaaaaccgtcccctaagttttgtaactgtagcaattttggcccc 15023040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 34100811 - 34100853
Alignment:
Q  183 aaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||||||| |||||||||||||||||||||| ||||    
T  34100811 aaaaccgtcccctaagttttgcaactgtagcagttttgacccc 34100853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 39918689 - 39918643
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||||||    
T  39918689 ctacaaaaccgccccctaagttttgcaactgtagcaattttggcccc 39918643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 32969771 - 32969726
Alignment:
Q  180 tacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||||| ||||||| ||||||||| |||||||||||||||||    
T  32969771 tacaaaaccgccccctaagttttgcaacagtagcagttttggcccc 32969726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 35718712 - 35718756
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcc 223  Q
    |||||||||||||||||| |||||||| |||| ||||||||||||    
T  35718712 ctacaaaaccgtcccctacattttgcatctgtggcagttttggcc 35718756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 226
Target Start/End: Complemental strand, 4925682 - 4925647
Alignment:
Q  191 cccctaaattttgcaactgtagcagttttggcccct 226  Q
    ||||||| ||||||||||||||||||||||||||||    
T  4925682 cccctaagttttgcaactgtagcagttttggcccct 4925647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 5470394 - 5470440
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||| | ||||||| |||||||| ||||||||||||||||||    
T  5470394 ctacaaaactgccccctaagttttgcaattgtagcagttttggcccc 5470440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 19206207 - 19206253
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||  ||||||| |||| ||||||||||||||||||||||    
T  19206207 ctacaaaaccaccccctaagttttacaactgtagcagttttggcccc 19206253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 225
Target Start/End: Complemental strand, 31827768 - 31827734
Alignment:
Q  191 cccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||| |||||||||||||||||||||||||||    
T  31827768 cccctaagttttgcaactgtagcagttttggcccc 31827734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 34761107 - 34761061
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| | ||||| |||||||| ||||||||||||||||||    
T  34761107 ctacaaaaccgccacctaagttttgcaattgtagcagttttggcccc 34761061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 36195657 - 36195702
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||||||| ||| |||||||||||||||||||||||    
T  36195657 ctacaaaaccgccccctaagttt-gcaactgtagcagttttggcccc 36195702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 37431785 - 37431739
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||| ||| |||||||||||||||| ||||||||||    
T  37431785 ctacaaaaccgccccttaagttttgcaactgtagcatttttggcccc 37431739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 43029041 - 43028995
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||||||| |||| ||| ||||||||||||||||||    
T  43029041 ctacaaaaccgccccctaagttttacaattgtagcagttttggcccc 43028995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 44297628 - 44297674
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||| | ||||||| ||||| |||||||||||||||||||||    
T  44297628 ctacaaaactgccccctaagttttgtaactgtagcagttttggcccc 44297674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 23759627 - 23759673
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  23759627 ctacaaaaccgtcccctaaattttgcaactgtagtagttttggcccc 23759673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 53924814 - 53924859
Alignment:
Q  180 tacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  53924814 tacaaaaccgtcccctaagttttgcaactgtagcagttttggcccc 53924859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 6614912 - 6614958
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||    
T  6614912 ctacaaaaccatcccctaagttttgcaactgtagcagttttggcccc 6614958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 21597472 - 21597511
Alignment:
Q  183 aaaaccgtcccctaaattttgcaactgtagcagttttggc 222  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  21597472 aaaaccgtcccctaagttttgcaactgtagcagttttggc 21597511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 2654021 - 2654067
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||||| || ||||| |||||||||||||||||||||||||||    
T  2654021 ctacaaaaccatctcctaagttttgcaactgtagcagttttggcccc 2654067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 10059750 - 10059792
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttgg 221  Q
    ||||||||||| ||||||| |||||||||||||||||||||||    
T  10059750 ctacaaaaccgccccctaagttttgcaactgtagcagttttgg 10059792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 16292515 - 16292469
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||| |||||||||| |||||||||||||| ||||||||||||    
T  16292515 ctacaaaatcgtcccctaagttttgcaactgtagtagttttggcccc 16292469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 18937311 - 18937353
Alignment:
Q  183 aaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||| |||||||||| |||||||||||||||||||||||||||    
T  18937311 aaaatcgtcccctaagttttgcaactgtagcagttttggcccc 18937353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 21597649 - 21597603
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||||||||||||||||||||||  ||| ||||||||||||||    
T  21597649 ctacaaaaccgtcccctaaattttgcatatgtggcagttttggcccc 21597603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 14060821 - 14060867
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| |||||||  ||||||||| ||||||||||||||||    
T  14060821 ctacaaaaccgccccctaagctttgcaactatagcagttttggcccc 14060867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 225
Target Start/End: Complemental strand, 20737469 - 20737435
Alignment:
Q  191 cccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||||||||||||| ||||||||||||||||    
T  20737469 cccctaaattttgcaactatagcagttttggcccc 20737435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 21957714 - 21957668
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| | ||||| |||||||||||||||||||||| ||||    
T  21957714 ctacaaaaccgcctcctaagttttgcaactgtagcagttttgacccc 21957668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 27978946 - 27978900
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||||||||||| |||| ||||| ||||||||||| ||||    
T  27978946 ctacaaaaccgtcccctaagttttacaactctagcagttttgacccc 27978900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 29697769 - 29697727
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttgg 221  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||    
T  29697769 ctacaaacccgtcccctaagttttgcaactgtagtagttttgg 29697727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 35393916 - 35393870
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||||||  ||||| |||||||||||||||||||||    
T  35393916 ctacaaaaccgccccctaggttttgtaactgtagcagttttggcccc 35393870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 2837147 - 2837102
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggccc 224  Q
    ||||||||||| ||||||| |||| ||| |||||||||||||||||    
T  2837147 ctacaaaaccgccccctaagttttacaattgtagcagttttggccc 2837102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 6637133 - 6637178
Alignment:
Q  180 tacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||||||||| ||| ||||||||||||||| |||||| ||||    
T  6637133 tacaaaaccgtcccttaagttttgcaactgtagcggttttgacccc 6637178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 10059944 - 10059899
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggccc 224  Q
    ||||||||||| ||||||| ||||||| |||| |||||||||||||    
T  10059944 ctacaaaaccgccccctaagttttgcatctgtggcagttttggccc 10059899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 21871447 - 21871491
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggccc 224  Q
    ||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  21871447 ctacaaaactgtccc-taagttttgcaactgtagcagttttggccc 21871491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 21927308 - 21927352
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggccc 224  Q
    ||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  21927308 ctacaaaactgtccc-taagttttgcaactgtagcagttttggccc 21927352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 1420601 - 1420645
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcc 223  Q
    ||||||||||| ||||||| |||||||||| || |||||||||||    
T  1420601 ctacaaaaccgccccctaagttttgcaactatatcagttttggcc 1420645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 34771338 - 34771378
Alignment:
Q  180 tacaaaaccgtcccctaaattttgcaactgtagcagttttg 220  Q
    |||||||| ||| ||||| ||||||||||||||||||||||    
T  34771338 tacaaaactgtctcctaagttttgcaactgtagcagttttg 34771378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 16545807 - 16545766
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16545807 ctacaaaaccgtcccctaaattttgcaactgtagcagttttg 16545766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 1096695 - 1096650
Alignment:
Q  180 tacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||    
T  1096695 tacaaaaccgtcccctaagctttgcaactgtagcagttttggcccc 1096650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 3377759 - 3377714
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggccc 224  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||    
T  3377759 ctacaaaaccgtcccctaagttttgcaactttagcagttttggccc 3377714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 8301592 - 8301546
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||||||||||||||||||| |||| ||||||||| ||||    
T  8301592 ctacaaaaccgtcccctaaattttgcatctgtggcagttttgacccc 8301546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 14979048 - 14979006
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttgg 221  Q
    ||||||||||| |||||||||||||||||||||| ||||||||    
T  14979048 ctacaaaaccgccccctaaattttgcaactgtagtagttttgg 14979006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 17692933 - 17692887
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||    
T  17692933 ctacaaaaccgtcccctaagttttgcaattgtagaagttttggcccc 17692887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 23891726 - 23891772
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  23891726 ctacaaaaccgccccttaagttttgcaactgtagcagttttggcccc 23891772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 30849287 - 30849333
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||||||||| ||||||||||||||| ||||||||||| ||||    
T  30849287 ctacaaaaccgtcctctaaattttgcaactatagcagttttgacccc 30849333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 12961092 - 12961049
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggc 222  Q
    ||||||||  |||||||||||||||||||||| |||||||||||    
T  12961092 ctacaaaattgtcccctaaattttgcaactgtggcagttttggc 12961049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 48319652 - 48319609
Alignment:
Q  180 tacaaaaccgtcccctaaattttgcaactgtagcagttttggcc 223  Q
    |||||| ||| ||||||| |||||||||||||||||||||||||    
T  48319652 tacaaagccgccccctaagttttgcaactgtagcagttttggcc 48319609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 50401619 - 50401580
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttt 218  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  50401619 ctacaaaaccgtcctctaagttttgcaactgtagcagttt 50401580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 6320631 - 6320677
Alignment:
Q  180 tacaaaaccgtcccctaaattttgcaactgtagcagttttggcccct 226  Q
    |||||||||||||||||||||||||| |||| | ||||||| |||||    
T  6320631 tacaaaaccgtcccctaaattttgcatctgtggtagttttgacccct 6320677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 12960912 - 12960958
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| | ||||| |||||||||| ||||||||||||||||    
T  12960912 ctacaaaaccgcctcctaagttttgcaactatagcagttttggcccc 12960958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 15659047 - 15659093
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||| ||||| ||||||| ||||||||||| |||||||||||||||    
T  15659047 ctacacaaccgccccctaagttttgcaactggagcagttttggcccc 15659093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 17760937 - 17760891
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||| ||| |||||||| ||||||||||||||||||    
T  17760937 ctacaaaaccgccccttaagttttgcaattgtagcagttttggcccc 17760891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 23220809 - 23220767
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttgg 221  Q
    ||||||||||| ||||||| |||| ||||||||||||||||||    
T  23220809 ctacaaaaccgccccctaagttttacaactgtagcagttttgg 23220767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 39642267 - 39642313
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||||||| || ||||| ||||||||||||||||||    
T  39642267 ctacaaaaccgccccctaagttctgcaattgtagcagttttggcccc 39642313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 41997706 - 41997752
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| | | ||| |||||||||||||||||||||||||||    
T  41997706 ctacaaaaccgcctcataagttttgcaactgtagcagttttggcccc 41997752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 6569594 - 6569639
Alignment:
Q  180 tacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||||| |||  ||||||||||| ||||||||||||||||||    
T  6569594 tacaaaaccgcccctaaaattttgcaattgtagcagttttggcccc 6569639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 39642491 - 39642409
Alignment:
Q  144 aggcttaataacagtttt-gccccctaagnnnnnnnctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||||| ||||||| ||||||||||       ||||||||||| ||||||| |||||||  ||| ||||||||||||||    
T  39642491 aggcttaatagcagttttagccccctaagaaaaaaactacaaaaccgccccctaagttttgcatttgtggcagttttggcccc 39642409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 45739182 - 45739137
Alignment:
Q  180 tacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||| | ||| ||| |||||||||||||||||||||||||||    
T  45739182 tacaaaactgccccataagttttgcaactgtagcagttttggcccc 45739137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 7579909 - 7579866
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcc 223  Q
    ||||||||||| |||||||||||||||| ||||| ||||||||||    
T  7579909 ctacaaaaccg-cccctaaattttgcaattgtagtagttttggcc 7579866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 36580340 - 36580384
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcc 223  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  36580340 ctacaaaaccgtcccctaagttttgcaactgtagcagttttggcc 36580384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 8074121 - 8074076
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggccc 224  Q
    |||||||||||||||| || ||||||||||||||||||||||||||    
T  8074121 ctacaaaaccgtccccaaagttttgcaactgtagcagttttggccc 8074076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 3247421 - 3247377
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcc 223  Q
    ||||||||||| | |||||||||||||||||||||||||||||||    
T  3247421 ctacaaaaccgcctcctaaattttgcaactgtagcagttttggcc 3247377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 15029306 - 15029258
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccctc 227  Q
    ||||||||||||||||||| |||| ||||||||||||||||| ||||||    
T  15029306 ctacaaaaccgtcccctaagttttccaactgtagcagttttgacccctc 15029258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 23746136 - 23746093
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggc 222  Q
    |||||||||||||| |||| ||||||||||||||||||||||||    
T  23746136 ctacaaaaccgtcctctaagttttgcaactgtagcagttttggc 23746093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 4049969 - 4049923
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| |||||||  ||||||||||||||||||||||||||    
T  4049969 ctacaaaaccgccccctaaggtttgcaactgtagcagttttggcccc 4049923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 5172771 - 5172729
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttgg 221  Q
    ||||||||||| ||||||| |||||||||||||||||||||||    
T  5172771 ctacaaaaccgccccctaagttttgcaactgtagcagttttgg 5172729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 15348204 - 15348158
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||||||| ||||||||| |||||||||||||||||    
T  15348204 ctacaaaaccgccccctaagttttgcaaccgtagcagttttggcccc 15348158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 20185164 - 20185118
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| | ||||| |||||||||||||||||||||||||||    
T  20185164 ctacaaaaccgcctcctaagttttgcaactgtagcagttttggcccc 20185118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 28472625 - 28472580
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||    
T  28472625 ctacaaaaccg-cccctaagttttgcaactgtagcagttttggcccc 28472580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 17876404 - 17876359
Alignment:
Q  180 tacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||||||||  ||| |||||||||||||||||||||||||||    
T  17876404 tacaaaaccgtccattaagttttgcaactgtagcagttttggcccc 17876359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 35250364 - 35250321
Alignment:
Q  182 caaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||| | ||||||| |||||||||||||||||||||||||||    
T  35250364 caaaactgccccctaagttttgcaactgtagcagttttggcccc 35250321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 28785824 - 28785869
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggccc 224  Q
    ||||||||||| ||||||| |||||||||||| | |||||||||||    
T  28785824 ctacaaaaccgccccctaagttttgcaactgttgtagttttggccc 28785869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 40872233 - 40872278
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggccc 224  Q
    ||||||||||||||| ||| ||||| |||||||||||||| |||||    
T  40872233 ctacaaaaccgtcccataagttttgtaactgtagcagtttaggccc 40872278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 18186506 - 18186550
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcc 223  Q
    ||||||||||| | ||||| |||||||||| ||||||||||||||    
T  18186506 ctacaaaaccgcctcctaagttttgcaactatagcagttttggcc 18186550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 18504484 - 18504444
Alignment:
Q  183 aaaaccgtcccctaaattttgcaactgtagcagttttggcc 223  Q
    ||||||||||| ||| |||||||| ||||||||||||||||    
T  18504484 aaaaccgtcccttaagttttgcaattgtagcagttttggcc 18504444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 46143 - 46189
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||    
T  46143 ctacaaaaccgccccctaagttttgcaactgtagcagttttggcccc 46189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 2853494 - 2853536
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttgg 221  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  2853494 ctacaaaaccgtcccctaagttttgcaactgtagcagttttgg 2853536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 33401302 - 33401256
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||    
T  33401302 ctacaaaactgtcccctaagttttgcaactgtagcagttttggcccc 33401256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 2840857 - 2840902
Alignment:
Q  180 tacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||    
T  2840857 tacaaaaccgtcccctaagttttgcaattgtagcagttttggcccc 2840902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 238994 - 239040
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||| |||||||||| ||||||||| |||||||||||||||||    
T  238994 ctacaaaatcgtcccctaagttttgcaaccgtagcagttttggcccc 239040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 3579661 - 3579707
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||||||    
T  3579661 ctacaaaaccgccccctaagttttgcaactgtagcacttttggcccc 3579707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 12766462 - 12766416
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  12766462 ctacaaaaccgccccttaagttttgcaactgtagcagttttggcccc 12766416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 28011373 - 28011327
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  28011373 ctacaaaaccgccccttaagttttgcaactgtagcagttttggcccc 28011327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 26601703 - 26601666
Alignment:
Q  183 aaaaccgtcccctaaattttgcaactgtagcagttttg 220  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  26601703 aaaaccgccccctaaattttgcaactgtagcagttttg 26601666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 1377455 - 1377409
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||| || |||||| ||||||||||||| |||||||||||||    
T  1377455 ctacaaaactgttccctaagttttgcaactgtaacagttttggcccc 1377409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 1385203 - 1385157
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||| || |||||| ||||||||||||| |||||||||||||    
T  1385203 ctacaaaactgttccctaagttttgcaactgtaacagttttggcccc 1385157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 10727257 - 10727303
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||| | || |||| |||||||||||||||||||||||||||    
T  10727257 ctacaaaactgccctctaagttttgcaactgtagcagttttggcccc 10727303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 10727441 - 10727395
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||||||| ||||||| |||| ||||||||||||||    
T  10727441 ctacaaaaccgccccctaagttttgcatctgtggcagttttggcccc 10727395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 225
Target Start/End: Complemental strand, 11351875 - 11351845
Alignment:
Q  195 taaattttgcaactgtagcagttttggcccc 225  Q
    |||||||||||||||||||||||||||||||    
T  11351875 taaattttgcaactgtagcagttttggcccc 11351845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 17248888 - 17248843
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||||||||||| || |||||||| ||||||||||||||||||    
T  17248888 ctacaaaaccgtcccc-aagttttgcaattgtagcagttttggcccc 17248843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 3812990 - 3812949
Alignment:
Q  183 aaaaccgtcccctaaattttgcaactgtagcagttttggccc 224  Q
    |||| ||||||||||||||||||| ||||| |||||||||||    
T  3812990 aaaatcgtcccctaaattttgcaattgtagtagttttggccc 3812949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 44436455 - 44436501
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||    
T  44436455 ctacaaaaccgccccctaagttttgcaactgtagcagttttggcccc 44436501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 44585854 - 44585900
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||    
T  44585854 ctacaaaaccgccccctaaattttgcaactgtagcagttttcgcccc 44585900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 51315562 - 51315607
Alignment:
Q  180 tacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||    
T  51315562 tacaaaaccgccccctaagttttgcaactgtagcagttttggcccc 51315607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 15978939 - 15978893
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||||||| |||||||||| ||||||||||||||||    
T  15978939 ctacaaaaccgccccctaagttttgcaactatagcagttttggcccc 15978893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 25154428 - 25154382
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  25154428 ctacaaaaccgccccttaagttttgcaactgtagcagttttggcccc 25154382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 38958092 - 38958046
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||||||| |||||||||||||||||||||| ||||    
T  38958092 ctacaaaaccgccccctaagttttgcaactgtagcagttttgacccc 38958046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 46226937 - 46226891
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  46226937 ctacaaaaccgtcccataacttttgcaactgtagcagttttagcccc 46226891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 54719061 - 54719103
Alignment:
Q  183 aaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||||| |||| |||||||||||||||||||||||||||    
T  54719061 aaaaccgtcctctaagttttgcaactgtagcagttttggcccc 54719103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 4474316 - 4474271
Alignment:
Q  180 tacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||||| || |||| |||||||||||||||||||||||||||    
T  4474316 tacaaaaccgccctctaagttttgcaactgtagcagttttggcccc 4474271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 8024842 - 8024887
Alignment:
Q  180 tacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||||| ||||||  |||||||||||||||||||||||||||    
T  8024842 tacaaaaccgccccctacgttttgcaactgtagcagttttggcccc 8024887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 12759575 - 12759618
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcc 223  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||    
T  12759575 ctacaaaaccg-cccctaagttttgcaactgtagcagttttggcc 12759618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 3193026 - 3192983
Alignment:
Q  182 caaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||| ||||||| ||||||||||||| |||||||||||||    
T  3193026 caaaaccgacccctaagttttgcaactgtaacagttttggcccc 3192983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 17773237 - 17773282
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||||||| |||||||||||| ||||||||||||||    
T  17773237 ctacaaaaccg-cccctaagttttgcaactgtggcagttttggcccc 17773282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 19074538 - 19074583
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||||||| |||||||||||| ||||||||||||||    
T  19074538 ctacaaaaccg-cccctaagttttgcaactgtggcagttttggcccc 19074583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 19404463 - 19404509
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||| | |||||||||||||||||| |||||||||| |||||    
T  19404463 ctacaaaactgccccctaaattttgcaactatagcagttttagcccc 19404509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 225
Target Start/End: Original strand, 25902480 - 25902514
Alignment:
Q  191 cccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||||||||||||| |||||||||||||    
T  25902480 cccctaaattttgcaactgtaacagttttggcccc 25902514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 28204544 - 28204586
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttgg 221  Q
    |||||||| || |||||||||||| ||||||||||||||||||    
T  28204544 ctacaaaatcgccccctaaattttacaactgtagcagttttgg 28204586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 28712709 - 28712663
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||| || ||||||| |||||||||||||||||||||| ||||    
T  28712709 ctacaaaatcgccccctaagttttgcaactgtagcagttttgacccc 28712663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 28944213 - 28944167
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||||||| ||| ||||||||||  |||||||||||||||    
T  28944213 ctacaaaaccgtcccttaagttttgcaacttcagcagttttggcccc 28944167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 44436645 - 44436599
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||||||| ||||||| |||| ||||||||||||||    
T  44436645 ctacaaaaccgccccctaagttttgcatctgtggcagttttggcccc 44436599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 51315731 - 51315685
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||||||| ||||||| |||| ||||||||||||||    
T  51315731 ctacaaaaccgccccctaagttttgcacctgtggcagttttggcccc 51315685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 54464410 - 54464364
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||||||| |||||||||| | ||||||||||||||    
T  54464410 ctacaaaaccggcccctaagttttgcaactctggcagttttggcccc 54464364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 86809 - 86768
Alignment:
Q  180 tacaaaaccgtcccctaaattttgcaactgtagcagttttgg 221  Q
    |||||||||| | ||||| |||||||||||||||||||||||    
T  86809 tacaaaaccgcctcctaagttttgcaactgtagcagttttgg 86768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 47189667 - 47189708
Alignment:
Q  183 aaaaccgtcccctaaattttgcaactgtagcagttttggccc 224  Q
    ||||||| ||| ||| ||||||||||||||||||||||||||    
T  47189667 aaaaccgccccttaagttttgcaactgtagcagttttggccc 47189708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 3192839 - 3192887
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccctc 227  Q
    ||||||||||| ||||||| |||| ||||||||| ||||| ||||||||    
T  3192839 ctacaaaaccgacccctaagtttttcaactgtagtagtttaggcccctc 3192887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 14992691 - 14992735
Alignment:
Q  182 caaaaccgtcccctaaattttgcaactgtagcagttttggcccct 226  Q
    ||||||||  || ||| ||||||||||||||||||||||||||||    
T  14992691 caaaaccgcaccttaagttttgcaactgtagcagttttggcccct 14992735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 41487267 - 41487311
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcc 223  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||    
T  41487267 ctacaaaaccgccccctaagttttgcaactgtagcagttttggcc 41487311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 30539238 - 30539192
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||||||||||| ||||||| |||| ||||||||||||||    
T  30539238 ctacaaaaccgtcccctaagttttgcatctgtggcagttttggcccc 30539192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 41487457 - 41487411
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||||||| ||||||||||||||| |||||||||||    
T  41487457 ctacaaaaccgccccctaagttttgcaactgtagctgttttggcccc 41487411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 17070975 - 17071019
Alignment:
Q  181 acaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||| | |||||| |||||||||||||||||||||||||||    
T  17070975 acaaaaccattccctaagttttgcaactgtagcagttttggcccc 17071019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 17577297 - 17577253
Alignment:
Q  181 acaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||| | |||||| |||||||||||||||||||||||||||    
T  17577297 acaaaaccattccctaagttttgcaactgtagcagttttggcccc 17577253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 22192545 - 22192502
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggc 222  Q
    ||||||||||||| ||||| ||||||||||||||| ||||||||    
T  22192545 ctacaaaaccgtctcctaagttttgcaactgtagccgttttggc 22192502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 29657770 - 29657816
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| |||||||||||||||  ||| ||||||||||||||    
T  29657770 ctacaaaaccgccccctaaattttgcatatgtggcagttttggcccc 29657816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 30539055 - 30539101
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||| | ||||||| |||| ||||||||||||||||||||||    
T  30539055 ctacaaaactgccccctaagttttacaactgtagcagttttggcccc 30539101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 37813338 - 37813292
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||||||| ||||||| |||| ||||||||||||||    
T  37813338 ctacaaaaccgccccctaagttttgcatctgtggcagttttggcccc 37813292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 20853625 - 20853580
Alignment:
Q  180 tacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||||||||| ||| ||||| |||||||||| ||||||||||    
T  20853625 tacaaaaccgtcccttaagttttgtaactgtagcaattttggcccc 20853580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 37263441 - 37263474
Alignment:
Q  192 ccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||| ||||||||||||||||||||||    
T  37263441 ccctaaattttacaactgtagcagttttggcccc 37263474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 14880412 - 14880448
Alignment:
Q  189 gtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  14880412 gtcccctaaattttgcatctgtggcagttttggcccc 14880448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 37535894 - 37535862
Alignment:
Q  189 gtcccctaaattttgcaactgtagcagttttgg 221  Q
    |||||||||||||||||||||||||| ||||||    
T  37535894 gtcccctaaattttgcaactgtagcaattttgg 37535862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 45457237 - 45457197
Alignment:
Q  180 tacaaaaccgtcccctaaattttgcaactgtagcagttttg 220  Q
    ||||||| |||||||||||||||||| |||| |||||||||    
T  45457237 tacaaaatcgtcccctaaattttgcatctgtggcagttttg 45457197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 20167 - 20121
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcccc 225  Q
    |||||||| ||||||||||||||||||| ||||| ||||||||||||    
T  20167 ctacaaaatcgtcccctaaattttgcaattgtagtagttttggcccc 20121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 4261 - 4220
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttg 220  Q
    ||||||||||| ||||||| ||||||||||||||||||||||    
T  4261 ctacaaaaccgccccctaagttttgcaactgtagcagttttg 4220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 203255 - 203300
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggccc 224  Q
    ||||||||||| | |||||||||||||||||||| |||||||||||    
T  203255 ctacaaaaccgcctcctaaattttgcaactgtagaagttttggccc 203300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 77108 - 77063
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggccc 224  Q
    |||||||| |||||||||| |||| |||||||||||||||||||||    
T  77108 ctacaaaatcgtcccctaagttttacaactgtagcagttttggccc 77063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 3644 - 3680
Alignment:
Q  183 aaaaccgtcccctaaattttgcaactgtagcagtttt 219  Q
    ||||||||||||||||||| |||||||||||||||||    
T  3644 aaaaccgtcccctaaatttcgcaactgtagcagtttt 3680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 19106 - 19150
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggcc 223  Q
    ||||||||||||||||||| ||||||||| ||||||| |||||||    
T  19106 ctacaaaaccgtcccctaagttttgcaaccgtagcagatttggcc 19150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 2819 - 2862
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggc 222  Q
    ||||||||| | |||||||||||| |||||||||||||||||||    
T  2819 ctacaaaactgccccctaaattttacaactgtagcagttttggc 2862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 94049 - 94004
Alignment:
Q  179 ctacaaaaccgtcccctaaattttgcaactgtagcagttttggccc 224  Q
    ||||||||||||||| ||| ||||| |||||||||||||| |||||    
T  94049 ctacaaaaccgtcccataagttttgtaactgtagcagtttaggccc 94004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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