View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17797_low_43 (Length: 246)
Name: NF17797_low_43
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 16867845 - 16868057
Alignment:
| Q |
16 |
atcctacaaaaggtaaattaaaattaactagagttagacgataaataatttcaaatcattgaatacgttacttatgagatgaacatgtaccacattgtcc |
115 |
Q |
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| T |
16867845 |
atcctacaaaaggtaaattaaaattaactagagttagacgataaataatttcgaatcattgaatatgttacttatgagatgaacacgtaccacattgtcc |
16867944 |
T |
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| Q |
116 |
ttggttcttcacaggtgtaacggctcctttcttcgtccaatccaccgaggatggaattgcacttgcattttcatacttaaaagtacttgtccttgtgatt |
215 |
Q |
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| T |
16867945 |
ttggttcttcacaggtgtaactgctcctttcttcctccaatccaccgaggatggaattgcacttgcattttcatacttaaaagtacttgtccttgtgatt |
16868044 |
T |
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| Q |
216 |
gaagagcacatat |
228 |
Q |
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||||||||||||| |
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| T |
16868045 |
gaagagcacatat |
16868057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 103 - 228
Target Start/End: Original strand, 30720123 - 30720245
Alignment:
| Q |
103 |
taccacattgtccttggttcttcacaggtgtaacggctcctttcttcgtccaatccaccgaggatggaattgcacttgcattttcatacttaaaagtact |
202 |
Q |
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| T |
30720123 |
taccacattgaccttggttcttcactggtgttactgctcctttctttctccaatccactgttgatggaa---cacttgcattttcatacttaaaagtact |
30720219 |
T |
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| Q |
203 |
tgtccttgtgattgaagagcacatat |
228 |
Q |
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|||| |||||||||| |||||||||| |
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| T |
30720220 |
tgtctttgtgattgaggagcacatat |
30720245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 103 - 228
Target Start/End: Complemental strand, 30881236 - 30881114
Alignment:
| Q |
103 |
taccacattgtccttggttcttcacaggtgtaacggctcctttcttcgtccaatccaccgaggatggaattgcacttgcattttcatacttaaaagtact |
202 |
Q |
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| T |
30881236 |
taccacattgaccttggttcttcactggtgttactgctcctttctttctccaatccactgttgatggaa---cacttgcattttcatacttaaaagtact |
30881140 |
T |
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| Q |
203 |
tgtccttgtgattgaagagcacatat |
228 |
Q |
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|||| |||||||||| |||||||||| |
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| T |
30881139 |
tgtctttgtgattgaggagcacatat |
30881114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 103 - 228
Target Start/End: Complemental strand, 30892319 - 30892197
Alignment:
| Q |
103 |
taccacattgtccttggttcttcacaggtgtaacggctcctttcttcgtccaatccaccgaggatggaattgcacttgcattttcatacttaaaagtact |
202 |
Q |
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| T |
30892319 |
taccacattgaccttggttcttcactggtgttactgctcctttctttctccaatccactgttgatggaa---cacttgcattttcatacttaaaagtact |
30892223 |
T |
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| Q |
203 |
tgtccttgtgattgaagagcacatat |
228 |
Q |
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|||| |||||||||| |||||||||| |
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| T |
30892222 |
tgtctttgtgattgaggagcacatat |
30892197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 103 - 228
Target Start/End: Original strand, 44731558 - 44731683
Alignment:
| Q |
103 |
taccacattgtccttggttcttcacaggtgtaacggctcctttcttcgtccaatccaccgaggatggaattgcacttgcattttcatacttaaaagtact |
202 |
Q |
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| T |
44731558 |
taccacattgaccttggttcttcacaggtgtcactgctcctttcttcctccaatccactgtggacgggattgcacttacattttcatacttaaaagtagt |
44731657 |
T |
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| Q |
203 |
tgtccttgtgattgaagagcacatat |
228 |
Q |
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||| | | |||||| |||||||||| |
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| T |
44731658 |
tgttttcgcgattgaggagcacatat |
44731683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 102 - 228
Target Start/End: Complemental strand, 8898858 - 8898732
Alignment:
| Q |
102 |
gtaccacattgtccttggttcttcacaggtgtaacggctcctttcttcgtccaatccaccgaggatggaattgcacttgcattttcatacttaaaagtac |
201 |
Q |
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||||||||||| |||||||||||||||||||| || |||||||||||| |||||||||| | ||||| ||||||||| |||||||||||||||||||| |
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| T |
8898858 |
gtaccacattggccttggttcttcacaggtgtcactgctcctttcttcctccaatccactgtagatgggattgcacttacattttcatacttaaaagtag |
8898759 |
T |
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| Q |
202 |
ttgtccttgtgattgaagagcacatat |
228 |
Q |
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|||||||| ||||||| |||||||||| |
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| T |
8898758 |
ttgtccttatgattgatgagcacatat |
8898732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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