View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17797_low_45 (Length: 240)
Name: NF17797_low_45
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 41173277 - 41173060
Alignment:
| Q |
11 |
agcataggcaacttaaaattctggatcgtagctctatcattgccaatctagtaaatgcaatgtctaggggaaaagtggtagaagaatacaaaatgatttg |
110 |
Q |
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| T |
41173277 |
agcataggcaacttaaaattctggatcgtagctctatcattgccaatctagtaaatgcaacgtctaggggaaaagtggtagaagaatacaaaatgatttg |
41173178 |
T |
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| Q |
111 |
cctcacatagagtcatgccaaattgcttgatgacttatactataacta-nnnnnnnactgcactattaattcaatttaattccattagtcacttttatgg |
209 |
Q |
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| T |
41173177 |
cctcacatagagtcatgccaaattgcttgatgatttatactataactattttttttactgcactattaactcaatttaattccattagtcacttttatgg |
41173078 |
T |
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| Q |
210 |
atttatataaagcacagg |
227 |
Q |
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|||||||||||||||||| |
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| T |
41173077 |
atttatataaagcacagg |
41173060 |
T |
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