View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17797_low_49 (Length: 235)
Name: NF17797_low_49
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_low_49 |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 64 - 205
Target Start/End: Original strand, 19661157 - 19661298
Alignment:
| Q |
64 |
ggaaatgctagtgttcccgacaaattataccaccagagatcacgatgttagttaattaatacaccacctccacctcttcaatctttagccatccatgttt |
163 |
Q |
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| T |
19661157 |
ggaaatgctagtgttcccgacaaattataccaccagagatcacgatgttagttaattactacaccaccttcacctcttcaatctttagccatccatgttt |
19661256 |
T |
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| Q |
164 |
tccaattaaactaagatctgactgtttgaattattcttgata |
205 |
Q |
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| T |
19661257 |
tccaattaaactaagatctgacggtttgaattattcttgata |
19661298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 63 - 201
Target Start/End: Original strand, 33910163 - 33910301
Alignment:
| Q |
63 |
gggaaatgctagtgttcccgacaaattataccaccagagatcacgatgttagttaattaatacaccacctccacctcttcaatctttagccatccatgtt |
162 |
Q |
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| T |
33910163 |
gggaaatgctagtgttccccacaaattataccccgagagatcacgatgttagttaattaataccccacctccacctcttcaatctttagccatccatgtt |
33910262 |
T |
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| Q |
163 |
ttccaattaaactaagatctgactgtttgaattattctt |
201 |
Q |
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| T |
33910263 |
ttccaattaaaccaagatctaacggtttgaattattctt |
33910301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 66 - 205
Target Start/End: Original strand, 1750727 - 1750866
Alignment:
| Q |
66 |
aaatgctagtgttcccgacaaattataccaccagagatcacgatgttagttaattaatacaccacctccacctcttcaatctttagccatccatgttttc |
165 |
Q |
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| T |
1750727 |
aaatgctaatcttcccgaaaaattataccacgagagatcacgatgttagttaattaataccccacctccacctcttcaatcattagccatccatgttttc |
1750826 |
T |
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| Q |
166 |
caattaaactaagatctgactgtttgaattattcttgata |
205 |
Q |
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| T |
1750827 |
caattaagccaagatctaactgtttaaattattcttgata |
1750866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 207
Target Start/End: Complemental strand, 3609202 - 3609075
Alignment:
| Q |
85 |
aaattataccaccaga-gatcacgatgttagtt----aattaatacaccacctccacctcttcaatctttagccatccatgttttccaattaaactaaga |
179 |
Q |
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|||||||||||| ||| |||||||||| ||||| ||||||||| || ||||||||| |||||||||| | || |||||||||||| || | | |||| |
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| T |
3609202 |
aaattataccacgagaagatcacgatgctagttcattaattaatacccctcctccaccttttcaatctttggtcacccatgttttccacttgagccaaga |
3609103 |
T |
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| Q |
180 |
tctgactgtttgaattattcttgatatt |
207 |
Q |
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||| || |||| ||||| || ||||||| |
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| T |
3609102 |
tctaacggttttaattactcgtgatatt |
3609075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 32928475 - 32928394
Alignment:
| Q |
100 |
agatcacgatgttagttaattaatacaccacctccacctcttcaatctttagccatccatgttttccaattaaactaagatct |
182 |
Q |
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|||||||||| |||||| |||||||| | ||||||||||||| |||||| |||||||||||||||||||||| | ||||||| |
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| T |
32928475 |
agatcacgat-ttagttcattaatacccttcctccacctcttcgatctttggccatccatgttttccaattaagccaagatct |
32928394 |
T |
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