View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17797_low_50 (Length: 227)
Name: NF17797_low_50
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_low_50 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 32182615 - 32182390
Alignment:
| Q |
1 |
tccatgttgcatgaccctattacaaagttattacaataacactataagttatgtttagattgacttatttgaacttgcatagtgacataacacatatgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32182615 |
tccatgttgcatgaccctattacaaaattattacaataacactataagttatgtttagattgacttatttgaacttgcatagtgacataacacatatgca |
32182516 |
T |
|
| Q |
101 |
aacgtgaagctatttggaagagcttataaaaacaatttatgacatgtatattatgnnnnnnnagcttatttccataaactcttcataagagcttctgaaa |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32182515 |
aacgtgaagctatttgaaagagcttataaaaacaatttatgacatgt-ccgtatgtttttttagcttatttccataaactcttcataagagcttctgaaa |
32182417 |
T |
|
| Q |
201 |
acagtctatgacattccatatgttttt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
32182416 |
acagtctatgacattccatatgttttt |
32182390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 45927396 - 45927359
Alignment:
| Q |
163 |
agcttatttccataaactcttcataagagcttctgaaa |
200 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
45927396 |
agcttatttccataaactctccataatagcttctgaaa |
45927359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 7871690 - 7871649
Alignment:
| Q |
163 |
agcttatttccataaactcttcataagagcttctgaaaacag |
204 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| ||||||||| |
|
|
| T |
7871690 |
agcttatttccataagctcttcaaaagagcttatgaaaacag |
7871649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 10391439 - 10391399
Alignment:
| Q |
113 |
tttggaagagcttataaaaacaatttatgacatgtatatta |
153 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||| ||||| |
|
|
| T |
10391439 |
tttggaagagtttataaaaacactttatgacatgtctatta |
10391399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University