View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17797_low_52 (Length: 211)
Name: NF17797_low_52
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_low_52 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 40953803 - 40953904
Alignment:
| Q |
1 |
acccgactcttaacctgataaaatttggtcagacgttacaaagacaaccgattgatcccaagaagagccgacaaa---tagtaatacataaagttatttt |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40953803 |
acccgactcttaacctgataaaatttggtcagacgttacaaagacaaccgattgatcccaagaagagccgacaaatagtagtaatacataaagttatttt |
40953902 |
T |
|
| Q |
98 |
at |
99 |
Q |
| |
|
|| |
|
|
| T |
40953903 |
at |
40953904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University