View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17797_low_6 (Length: 564)
Name: NF17797_low_6
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 127 - 549
Target Start/End: Complemental strand, 40312488 - 40312065
Alignment:
| Q |
127 |
tgtgtaaccaagtaaaaaagaccaagtatcacagaaacttcagaagtgaaactgaactaaaaaccaatagttccaactagtgaaacatgaaatccttgtt |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40312488 |
tgtgtaaccaagtaaaaaagaccaagtatcacagaaacttcagaagtgaaactgaactaaaaaccaatagttccaactagtgaaacatgaaatccttgtt |
40312389 |
T |
|
| Q |
227 |
cgcacaaccttaaaaaccgttac-nnnnnnnnnncctcttctggttttcaacaaaaccagtggcagcaaatgnnnnnnngtctcnnnnnnnccggaattt |
325 |
Q |
| |
|
| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
40312388 |
cacacaaccttaaaaaccgttactttttttttttccttttctggttttcaacaaaaccagtggcagcaaatgtttttttgtctcaaaaaaaccggaattt |
40312289 |
T |
|
| Q |
326 |
tttgctgtcttatctctagaagaagtnnnnnnnncagcttctaacttggaagcttctcaactaaatttacgcgtttttcttttatttgggcaaaagccca |
425 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40312288 |
tttgctgtcttatctctagaagaagt-aaaaaaacagcttctaacttggaagcttctcaactaaatttacgcgtttttcttttatttgggcaaaagccca |
40312190 |
T |
|
| Q |
426 |
atgtaaaagccat-nnnnnnnnngttgtaaaaatttgaactttgaaccgacccttttaacttaagtgcttcttcttcctctatggagcttgaggaagaag |
524 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40312189 |
atgtaaaagccataaaaaaaaaagttgtaaaaatttgaactttgaaccgacccttttaacttaagtgcttcttcttcctctatggagcttgaggaagaag |
40312090 |
T |
|
| Q |
525 |
aaagagaaagatggtatgaagaaaa |
549 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
40312089 |
aaagagaaagatggtatgaagaaaa |
40312065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 40312604 - 40312559
Alignment:
| Q |
11 |
cagcacagaacactcttaagaccccaaataagggttgtgtttatag |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40312604 |
cagcacagaacactcttaagaccccaaataagggttgtgtttatag |
40312559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University