View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17797_low_9 (Length: 538)
Name: NF17797_low_9
Description: NF17797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17797_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 59 - 524
Target Start/End: Complemental strand, 47693481 - 47693016
Alignment:
| Q |
59 |
tgtataatacctatatgcaacatcagcaactgcaaatacatgagggctcaactctccaaatggcgctcccttgtactgttgcatcatgtgtgcatcataa |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47693481 |
tgtataatacctatatgcaacatcagcaactgcaaatacatgagggctcaactctccaaatggcgctcccttgtactgttgcatcatgtgtgcatcataa |
47693382 |
T |
|
| Q |
159 |
agatgaggtaatctttggaatggatttattgcaatcaatatgtttccggtataagtctgtaaaagcaattaagaagatggttaagtgcttttagggctga |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47693381 |
agatgaggtaatctttggaatggatttattgcaatcaatatgtttccggtataagtctgtaaaaggaattaagaagatggttaagtgcttttagggctga |
47693282 |
T |
|
| Q |
259 |
taaaaacaagttgcaaacttatcatggtaaggggaaatgagccttacatatatttcattcaattcatatctaatttttaaattctccaggactccaggct |
358 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47693281 |
taaaaacaagttgcaaacttatcatagtaaagggaaatgagccttacatatatttcattcaattcatatctaatttttaaattctccaggactccaggct |
47693182 |
T |
|
| Q |
359 |
catgcaaataggacaatttagtcatatcatccactcccccagctggagcttccatatctttgggtaatatttttgataactttgcaacaacctagaaata |
458 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47693181 |
catgcaaataggacaatttagtcatatcatccactcccccagctggagcttccatatctttgggtaatatttttgataactttgcaacaacctagaaata |
47693082 |
T |
|
| Q |
459 |
tccaaaatagaatcacacgtattcagaaatcagaagtagctttttccttgtataacattttgtaac |
524 |
Q |
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| T |
47693081 |
tccaaaatagaatcacatgtattcagaaatcagaagtagctttttccttgtataacattttgtaac |
47693016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 298 - 446
Target Start/End: Original strand, 35832609 - 35832757
Alignment:
| Q |
298 |
agccttacatatatttcattcaattcatatctaatttttaaattctccaggactccaggctcatgcaaataggacaatttagtcatatcatccactcccc |
397 |
Q |
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|
|||||||||||||||| |||||||||||||||| |||||| |||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||| | |
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| T |
35832609 |
agccttacatatattttattcaattcatatctagcttttaagttctgcaggactccaggctcgtgcaaataggacagtttagtcatatcatccactccac |
35832708 |
T |
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| Q |
398 |
cagctggagcttccatatctttgggtaatatttttgataactttgcaac |
446 |
Q |
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||| || ||||| |||| || || | |||||||||||| |||||||| |
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| T |
35832709 |
caggaagaacttccgtatccttaggaagtatttttgataaatttgcaac |
35832757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 66 - 217
Target Start/End: Original strand, 35832380 - 35832531
Alignment:
| Q |
66 |
tacctatatgcaacatcagcaactgcaaatacatgagggctcaactctccaaatggcgctcccttgtactgttgcatcatgtgtgcatcataaagatgag |
165 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||| | ||||||| ||| || ||||||| ||||||||||||| ||| |||||| ||||| |
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| T |
35832380 |
tacctatatgcaacctcagctactgcaaatacatgagggcttagttctccaagtggatcttccttgtatcgttgcatcatgtgcgcaccataaatatgag |
35832479 |
T |
|
| Q |
166 |
gtaatctttggaatggatttattgcaatcaatatgtttccggtataagtctg |
217 |
Q |
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| | ||||||||||||||||||| |||| |||||||| ||||||||||| |
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| T |
35832480 |
gcagcgtttggaatggatttattgcgatcagaatgtttccagtataagtctg |
35832531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 87 - 217
Target Start/End: Original strand, 49001059 - 49001189
Alignment:
| Q |
87 |
actgcaaatacatgagggctcaactctccaaatggcgctcccttgtactgttgcatcatgtgtgcatcataaagatgaggtaatctttggaatggattta |
186 |
Q |
| |
|
|||||||||||||||||| | | |||||||||||| ||||||| || ||||| ||||||| ||| |||||| |||||| |||||||| ||||||| |
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| T |
49001059 |
actgcaaatacatgagggtttagttctccaaatggctctcccttatatcgttgcttcatgtgcgcaccataaatatgaggcggcctttggaacggattta |
49001158 |
T |
|
| Q |
187 |
ttgcaatcaatatgtttccggtataagtctg |
217 |
Q |
| |
|
||||||||| |||||||||||||||||||| |
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| T |
49001159 |
ttgcaatcagaatgtttccggtataagtctg |
49001189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 298 - 393
Target Start/End: Original strand, 49001267 - 49001362
Alignment:
| Q |
298 |
agccttacatatatttcattcaattcatatctaatttttaaattctccaggactccaggctcatgcaaataggacaatttagtcatatcatccact |
393 |
Q |
| |
|
|||||||||||||||| |||||||| |||||| |||||| |||| ||||||||||| ||| ||||||||||||| |||| |||||||||||||| |
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| T |
49001267 |
agccttacatatattttattcaattgatatctggcttttaagttctgcaggactccagactcgtgcaaataggacattttattcatatcatccact |
49001362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 67 - 217
Target Start/End: Original strand, 52155273 - 52155423
Alignment:
| Q |
67 |
acctatatgcaacatcagcaactgcaaatacatgagggctcaactctccaaatggcgctcccttgtactgttgcatcatgtgtgcatcataaagatgagg |
166 |
Q |
| |
|
|||| ||||||||||| ||||||||||| ||||| || || ||||||||||||| ||||| ||||| |||||||||||||| | |||||| |||||||| |
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| T |
52155273 |
acctgtatgcaacatctgcaactgcaaaaacatggggacttaactctccaaatgcagctcctttgtattgttgcatcatgtgggtatcatatagatgagg |
52155372 |
T |
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| Q |
167 |
taatctttggaatggatttattgcaatcaatatgtttccggtataagtctg |
217 |
Q |
| |
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|| ||||| || || ||||| ||||||| || ||||| ||||| ||||| |
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| T |
52155373 |
caacctttgaaaagggtttatcgcaatcaggatatttccagtatatgtctg |
52155423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 44576169 - 44576133
Alignment:
| Q |
1 |
aggtcttggactattatccattggggctggtggaatt |
37 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||| |
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| T |
44576169 |
aggtcttggactattatccattggtgctggtggaatt |
44576133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 195
Target Start/End: Original strand, 28999075 - 28999179
Alignment:
| Q |
91 |
caaatacatgagggctcaactctccaaatggcgctcccttgtactgttgcatcatgtgtgcatcataaagatgaggtaatctttggaatggatttattgc |
190 |
Q |
| |
|
||||||||||||| || || |||| || |||| |||||||||| |||||||||| | ||| |||||| |||||| | |||| |||| ||||||||| |
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| T |
28999075 |
caaatacatgaggacttaattctcaaagtggctctcccttgtatcattgcatcatgcgcgcaccataaatatgaggcagcttttgaaatgaatttattgc |
28999174 |
T |
|
| Q |
191 |
aatca |
195 |
Q |
| |
|
||||| |
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|
| T |
28999175 |
aatca |
28999179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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