View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17798_high_1 (Length: 626)

Name: NF17798_high_1
Description: NF17798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17798_high_1
NF17798_high_1
[»] chr8 (9 HSPs)
chr8 (188-611)||(27664971-27665393)
chr8 (321-611)||(27676797-27677079)
chr8 (12-123)||(27664795-27664906)
chr8 (335-549)||(21401378-21401595)
chr8 (335-549)||(21795871-21796088)
chr8 (12-123)||(27644056-27644167)
chr8 (493-606)||(11197771-11197886)
chr8 (379-494)||(13502198-13502307)
chr8 (406-480)||(10363653-10363727)
[»] chr5 (3 HSPs)
chr5 (321-549)||(11273441-11273677)
chr5 (344-539)||(20161903-20162101)
chr5 (256-317)||(23276008-23276069)
[»] chr4 (2 HSPs)
chr4 (328-539)||(24902807-24903021)
chr4 (256-318)||(24904278-24904340)
[»] chr2 (1 HSPs)
chr2 (340-480)||(19989032-19989172)
[»] chr7 (1 HSPs)
chr7 (462-568)||(23197895-23198001)


Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 188 - 611
Target Start/End: Original strand, 27664971 - 27665393
Alignment:
Q  188 tgtgaccattacgaaaaaatggcagaatataaaggtgttagatgatgtattaattacctannnnnnnnacgtttgatgagcatagaaacttgcttcctat 287  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||| |||||||||||||||    
T  27664971 tgtgagcattacgaaaaaatggcagaatataaaggtgttagatgatgtattaattacctattttttt-acgtttgatgagcataaaaacttgcttcctat 27665069  T
Q  288 ccttttctaatgatttgagcccaagctttttcatgacagagacactgctcttatgaatgttgttgccaaagttcatcctgaaacagctgccttacttttt 387  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27665070 ccttttctaatgatttgagcccaaactttttcatgacagagacattgctcttatgaatgttgttgccaaagttcatcctgaaacagctgccttacttttt 27665169  T
Q  388 cattttcatattgagagaaatgtaagagctaaatgcatcatggactgtagagtcaatccaaagttgaaggatgtaaaagtagatgagaaagaaaaataag 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27665170 cattttcatattgagagaaatgtaagagctaaatgcatcatggactgtagagtcaatccaaagttgaaggatgtaaaagtagatgagaaagaaaaataag 27665269  T
Q  488 tgaaggaggtgaaggctagtgacatagttaacaaaatcatgacagcttgggacaacgtggttaagtcttcttcataagaattatgcagatgccgttgtgt 587  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  27665270 tgaaggaggtgaaggctagtgacatagttaacaaaatcatgacagcttgggacaatgtggttaagtcttcttcataagaattatgtagatgccgttgtgt 27665369  T
Q  588 atttctgagatgtatgcaaaaatt 611  Q
    ||||||||||||||||||||||||    
T  27665370 atttctgagatgtatgcaaaaatt 27665393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 321 - 611
Target Start/End: Complemental strand, 27677079 - 27676797
Alignment:
Q  321 tgacagagacactgctcttatgaatgttgttgccaaagttcatcctgaaacagctgccttactttttcattttcatattgagagaaatgtaagagctaaa 420  Q
    |||||| |||||| |||||||||||||||||||||||||||  ||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  27677079 tgacagggacactactcttatgaatgttgttgccaaagttctccctaaaacgattgccttactttttcattttcatattgagagaaatgtaagagctaaa 27676980  T
Q  421 tgcatcatggactgtagagtcaatccaaagttgaaggatgtaaaagtagatgagaaagaaaaataagtgaaggaggtgaaggctagtgacatagttaaca 520  Q
    | |||||| ||||| |||||          ||||||||||||||||| |||| |||||| ||| |||||||||||||||| || ||||||||||||||||    
T  27676979 tccatcatagactgcagagt----------ttgaaggatgtaaaagttgatgggaaagataaagaagtgaaggaggtgaatgcaagtgacatagttaaca 27676890  T
Q  521 aaatcatgacagcttgggacaacgtggttaagtcttcttcataagaat--tatgcagatgccgttgtgtatttctgagatgtatgcaaaaatt 611  Q
    | ||||||||| ||||||||||| ||  | ||||| ||||||| ||||  |||||||||||| | ||| |||| | |||||||||||||||||    
T  27676889 acatcatgacaacttgggacaacatgaatgagtctccttcataggaatcatatgcagatgccatcgtgcattttttagatgtatgcaaaaatt 27676797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 27664795 - 27664906
Alignment:
Q  12 gagatgaaataacattctagagcttgtattttagtaattgttaaataatatcagctatgaaaattagtttttgcaaataatatgcacaacgatcctaacc 111  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27664795 gagatgaaataacattctagagcttgtattttagtaattgtcaaataatatcagctatgaaaattagtttttgcaaataatatgcacaacgatcctaacc 27664894  T
Q  112 attgaacatgga 123  Q
    ||||||||||||    
T  27664895 attgaacatgga 27664906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 335 - 549
Target Start/End: Complemental strand, 21401595 - 21401378
Alignment:
Q  335 ctcttatgaatgttgttgccaaagttcatcctgaaacagctgccttactttttcattttcatattgagagaaatgtaagagctaaatgcatcatggactg 434  Q
    |||| ||||||||| ||||||| ||||  |||||||| || || ||||||| | |||||||||||| ||  | ||||| |||||||||||||| |||||     
T  21401595 ctctgatgaatgttattgccaatgttctacctgaaactgccgctttactttgttattttcatattgggaagagtgtaaaagctaaatgcatcacggactc 21401496  T
Q  435 tagagtcaatccaaagttgaaggatgtaaaagtagatgagaaagaa---aaataagtgaaggaggtgaaggctagtgacatagttaacaaaatcatgaca 531  Q
     | |||||| || |||||||||||||||||||| |||| |||||||   ||  ||||||||||||||||||  |||||| |||| ||||| ||||||| |    
T  21401495 caaagtcaaaccgaagttgaaggatgtaaaagttgatgggaaagaagtgaaggaagtgaaggaggtgaaggaaagtgacgtagtgaacaacatcatgaga 21401396  T
Q  532 gcttgggacaacgtggtt 549  Q
    ||||| || || ||||||    
T  21401395 gcttgtgataatgtggtt 21401378  T

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Target: chr8; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 335 - 549
Target Start/End: Complemental strand, 21796088 - 21795871
Alignment:
Q  335 ctcttatgaatgttgttgccaaagttcatcctgaaacagctgccttactttttcattttcatattgagagaaatgtaagagctaaatgcatcatggactg 434  Q
    |||| ||||||||| ||||||| ||||  |||||||| || || ||||||| | |||||||||||| ||  | ||||| |||||||||||||| |||||     
T  21796088 ctctgatgaatgttattgccaatgttctacctgaaactgccgctttactttgttattttcatattgggaagagtgtaaaagctaaatgcatcacggactc 21795989  T
Q  435 tagagtcaatccaaagttgaaggatgtaaaagtagatgagaaagaa---aaataagtgaaggaggtgaaggctagtgacatagttaacaaaatcatgaca 531  Q
     | |||||| || |||||||||||||||||||| |||| |||||||   ||  ||||||||||||||||||  |||||| |||| ||||| ||||||| |    
T  21795988 caaagtcaaaccgaagttgaaggatgtaaaagttgatgggaaagaagtgaaggaagtgaaggaggtgaaggaaagtgacgtagtgaacaacatcatgaga 21795889  T
Q  532 gcttgggacaacgtggtt 549  Q
    ||||| || || ||||||    
T  21795888 gcttgtgataatgtggtt 21795871  T

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Target: chr8; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 27644056 - 27644167
Alignment:
Q  12 gagatgaaataacattctagagcttgtattttagtaattgttaaataatatcagctatgaaaattagtttttgcaaataatatgcacaacgatcctaacc 111  Q
    |||||||||||| ||| ||||||||||| |||||||||||| | |||| |||||||| ||  |||||||| ||||||||||| |||||| |||||| | |    
T  27644056 gagatgaaataagattttagagcttgtaatttagtaattgtcacataagatcagctaggagcattagtttgtgcaaataatacgcacaaggatcctgatc 27644155  T
Q  112 attgaacatgga 123  Q
    ||||||||||||    
T  27644156 attgaacatgga 27644167  T

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Target: chr8; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 493 - 606
Target Start/End: Original strand, 11197771 - 11197886
Alignment:
Q  493 gaggtgaaggctagtgacatagttaacaaaatcatgacagcttgggacaacgtggttaagtcttcttcataagaat--tatgcagatgccgttgtgtatt 590  Q
    ||||||||||| ||||||||||||||||| || |||| ||||||||| ||| |||||||||||  |||| | ||||  ||||||||||  || ||| |||    
T  11197771 gaggtgaaggcaagtgacatagttaacaatattatgagagcttgggaaaacatggttaagtctctttcaaaggaatcatatgcagatgtagtggtgcatt 11197870  T
Q  591 tctgagatgtatgcaa 606  Q
    ||||||||||||||||    
T  11197871 tctgagatgtatgcaa 11197886  T

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Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 379 - 494
Target Start/End: Original strand, 13502198 - 13502307
Alignment:
Q  379 ttactttttcattttcatattgagagaaatgtaagagctaaatgcatcatggactgtagagtcaatccaaagttgaaggatgtaaaagtagatgagaaag 478  Q
    ||||||| ||||||||||||||||| ||||||||| |||||||| ||||  || ||||||||||| ||       |||||||||||||| ||||||||||    
T  13502198 ttactttgtcattttcatattgagaaaaatgtaagggctaaatgtatcacagagtgtagagtcaaacc------taaggatgtaaaagtggatgagaaag 13502291  T
Q  479 aaaaataagtgaagga 494  Q
    | ||| |||| |||||    
T  13502292 ataaagaagtcaagga 13502307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 406 - 480
Target Start/End: Original strand, 10363653 - 10363727
Alignment:
Q  406 aatgtaagagctaaatgcatcatggactgtagagtcaatccaaagttgaaggatgtaaaagtagatgagaaagaa 480  Q
    |||||||||| ||| ||||||||||| |  |||||||| ||||||  |||||||||||||||  ||| |||||||    
T  10363653 aatgtaagagttaactgcatcatggattacagagtcaacccaaagccgaaggatgtaaaagtttatgggaaagaa 10363727  T

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Target: chr5 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 321 - 549
Target Start/End: Original strand, 11273441 - 11273677
Alignment:
Q  321 tgacagagacactgctcttatgaatgttgttgccaaagttcatcctgaaacagctgccttactttttcattttcatattgagagaaatgtaagagctaaa 420  Q
    |||||| ||||||||| | ||||||||||||| ||||||||  |||||||  | ||| ||||||| ||||||||||||||||| ||||||||||||||||    
T  11273441 tgacagggacactgctgtgatgaatgttgttggcaaagttctccctgaaattgttgctttactttgtcattttcatattgagaaaaatgtaagagctaaa 11273540  T
Q  421 tgcatcatggactgtagagtcaatccaaagttgaaggatgtaaaagtagatgagaaagaaaaataag---------tgaaggaggtgaaggctagtgaca 511  Q
    |||||||  ||||| || |||||    |||   || ||||||||||| |||| |||||| ||| |||         ||||||||||||||||  ||||||    
T  11273541 tgcatca-cgactgcagtgtcaaaatgaagccaaatgatgtaaaagttgatgggaaagataaagaagtgaaggaaatgaaggaggtgaaggcaggtgaca 11273639  T
Q  512 tagttaacaaaatcatgacagcttgggacaacgtggtt 549  Q
    |||||||||| ||||||| |||||||||  ||||||||    
T  11273640 tagttaacaatatcatgagagcttgggatgacgtggtt 11273677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 344 - 539
Target Start/End: Complemental strand, 20162101 - 20161903
Alignment:
Q  344 atgttgttgccaaagttcatcctgaaacagctgccttactttttcattttcatattgagagaaatgtaagagctaaatgcatcatggactgtagagtcaa 443  Q
    ||||||||||||||||||    |||||| | ||| |||| ||||||||||||||||| ||  |||||||||  |||| |||| | | |||| | ||||||    
T  20162101 atgttgttgccaaagttctctgtgaaactgttgctttaccttttcattttcatattgggaagaatgtaagatgtaaacgcattacgaactgcaaagtcaa 20162002  T
Q  444 tccaaagttgaaggatgtaaaagtagatgagaaagaa---aaataagtgaaggaggtgaaggctagtgacatagttaacaaaatcatgacagcttggga 539  Q
    |||||||| ||| ||||||||| |  ||  |||||||   ||  ||| |||||| |||||||| ||||||||||||||||||||||||| || ||||||    
T  20162001 tccaaagtcgaatgatgtaaaatttaataggaaagaagtgaaggaagagaaggatgtgaaggcaagtgacatagttaacaaaatcatgagagtttggga 20161903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 23276069 - 23276008
Alignment:
Q  256 acgtttgatgagcatagaaacttgcttcctatccttttctaatgatttgagcccaagctttt 317  Q
    |||||| |||||  ||||||||||||||||| | ||||| |||||||||||| ||| |||||    
T  23276069 acgttttatgagtgtagaaacttgcttcctaacgttttccaatgatttgagctcaaactttt 23276008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 328 - 539
Target Start/End: Complemental strand, 24903021 - 24902807
Alignment:
Q  328 gacactgctcttatgaatgttgttgccaaagttcatcctgaaacagctgccttactttttcattttcatattgagagaaatgtaagagctaaatgcatca 427  Q
    |||| |||||| |||| |||||||||||||||||   ||||||| || || ||||||| | ||||||||||||| |  |||||||| |||||||| ||||    
T  24903021 gacaatgctctgatgattgttgttgccaaagttctctctgaaactgccgctttactttgttattttcatattgaaaagaatgtaagggctaaatgaatca 24902922  T
Q  428 tggactgtagagtcaatccaaagttgaaggatgtaaaagtagatgagaaagaa---aaataagtgaaggaggtgaaggctagtgacatagttaacaaaat 524  Q
     ||| |||||||||||  | |||| || |||||||||||| |||| || ||||   ||| |||||||||| |||||  | |||||| |||||||||| ||    
T  24902921 cggaatgtagagtcaaatcgaagtcgatggatgtaaaagttgatgggagagaagtgaaaaaagtgaaggatgtgaaaacaagtgacgtagttaacaacat 24902822  T
Q  525 catgacagcttggga 539  Q
    ||||| || ||||||    
T  24902821 catgagagtttggga 24902807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 256 - 318
Target Start/End: Original strand, 24904278 - 24904340
Alignment:
Q  256 acgtttgatgagcatagaaacttgcttcctatccttttctaatgatttgagcccaagcttttt 318  Q
    ||||||||||||| |||||||||||||| |    |||| ||||||||||||| ||||||||||    
T  24904278 acgtttgatgagcgtagaaacttgcttcatgatgttttttaatgatttgagctcaagcttttt 24904340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 340 - 480
Target Start/End: Original strand, 19989032 - 19989172
Alignment:
Q  340 atgaatgttgttgccaaagttcatcctgaaacagctgccttactttttcattttcatattgagagaaatgtaagagctaaatgcatcatggactgtagag 439  Q
    |||||||| |||||||||||||  ||||| ||  |||| ||||||| | |||||||||| | ||  |||||||||||||| |||||||| ||  | ||||    
T  19989032 atgaatgtcgttgccaaagttctccctgatacttctgctttactttgttattttcatatcgtgaagaatgtaagagctaagtgcatcatagatcgcagag 19989131  T
Q  440 tcaatccaaagttgaaggatgtaaaagtagatgagaaagaa 480  Q
    ||||  | |||  ||||||||||||||| |||| |||||||    
T  19989132 tcaaagcgaagccgaaggatgtaaaagttgatgggaaagaa 19989172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 568
Target Start/End: Complemental strand, 23198001 - 23197895
Alignment:
Q  462 aaaagtagatgagaaagaaaaataagtgaaggaggtgaaggctagtgacatagttaacaaaatcatgacagcttgggacaacgtggttaagtcttcttca 561  Q
    |||||| |||||| |||||||  |||| || ||||| ||||| ||||  ||||||||||| ||||||| ||||| ||| || |||||| ||||| |||||    
T  23198001 aaaagtggatgagtaagaaaaggaagtcaatgaggtaaaggcaagtgggatagttaacaatatcatgagagcttcggataatgtggttgagtctccttca 23197902  T
Q  562 taagaat 568  Q
     ||||||    
T  23197901 aaagaat 23197895  T

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