View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17798_high_12 (Length: 260)
Name: NF17798_high_12
Description: NF17798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17798_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 90 - 245
Target Start/End: Original strand, 39747836 - 39748007
Alignment:
| Q |
90 |
tattattaaataggcttgaatctcatcccaaaagatatagctcaaataacaaactacaaataactttgaaaccaacttca----------------taaa |
173 |
Q |
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| T |
39747836 |
tattattaaataggtttgaatctcatcctaagagatataacttaaataataaactacaaacaactttgaaaccaacttcaaccaatatagcctccataaa |
39747935 |
T |
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| Q |
174 |
ttcaaaataagtccagcaagtagtatttcctcctcttattgttgttggtttataagtttttagtgataaaaa |
245 |
Q |
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| T |
39747936 |
ttcaaaataagtccagcaagtagtatttcctcctcttattgttgttggtttataagtttttagtgataaaaa |
39748007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 39747390 - 39747473
Alignment:
| Q |
15 |
tatcttaactatttcatggtgaatttagtatgccaaattagatttaagaactccactaagaatttattccaatgatattattaa |
98 |
Q |
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| T |
39747390 |
tatcataactatttcatggtgaatttagtatgccaaattagatttaagaactccactaagaatttattccaatgatattattaa |
39747473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 20982667 - 20982703
Alignment:
| Q |
133 |
aaataacaaactacaaataactttgaaaccaacttca |
169 |
Q |
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| T |
20982667 |
aaataacaaactacaaacaactttaaaaccaacttca |
20982703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 20995550 - 20995586
Alignment:
| Q |
133 |
aaataacaaactacaaataactttgaaaccaacttca |
169 |
Q |
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| T |
20995550 |
aaataacaaactacaaacaactttaaaaccaacttca |
20995586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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