View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17798_high_3 (Length: 558)
Name: NF17798_high_3
Description: NF17798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17798_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 8951714 - 8952246
Alignment:
| Q |
1 |
atgaagaagatgagttgaataacaccaaaatgatgccaattcaaacacgtactatttcattccataagagacaggccttaggtaaatggaaatttattac |
100 |
Q |
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| T |
8951714 |
atgaagaggatgagttgaataacaccaaaatgatgccaattcaaacacgtactatttcattccataagagacaggccttaggtaaatggaaatttattac |
8951813 |
T |
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| Q |
101 |
ttgtannnnnnnnnnnnagtcaaattttgctttgtcctgaattacttgcattttaatgcagtgacatatatggagaacaatagagcaggaatcacagttt |
200 |
Q |
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| T |
8951814 |
ttgtattttcttttt--agt--------gctttgtcctgaattacttgcattttaatgcagtgacatatatggagaacaatagagcaggaatcacagttt |
8951903 |
T |
|
| Q |
201 |
atggattcatgcttgacagaacttggcttcactccatttttggtattcaattggctctttgtctttggctactgaacaagacggtcggtatctagaaaca |
300 |
Q |
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| T |
8951904 |
atggattcatgcttgacagaacttggcttcactccatttttggtattcaattggctctttgtctttggctactgaacaagacggtcggtatctagaaaca |
8952003 |
T |
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| Q |
301 |
gaaaggaactacaatgatcctcctagtcctagtcctgccttgtgtgatgtacagtacatcttttgaatagtcatcttttcgtttgaatctcgttctggtt |
400 |
Q |
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| T |
8952004 |
gaaaggaactacaatgatcctcctagttctagtcctgccttgtgtgatgtacagtacatcttttgaatagtcatcttttcgtttgaatcttgttctggtt |
8952103 |
T |
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| Q |
401 |
atgacatacaaaatgtaaatgatacgcattttttgcgaatagtgttgagactattgtaaatgtgtctgcgtgactgcgtctcctactactcaggggaata |
500 |
Q |
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| T |
8952104 |
atgacatacgaaatgtaaatgatacgcattttttgcaaatagtgttgagactattgtaaatgtgtctgcgtgactgcgtctcctactagtcaggggaaga |
8952203 |
T |
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| Q |
501 |
tcctcatatcagatgacacgcaagacagacacgttgaagtgaa |
543 |
Q |
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| T |
8952204 |
tcctcatatcagatggcacgcaagacagacacgttgaagtgaa |
8952246 |
T |
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