View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17798_high_5 (Length: 524)
Name: NF17798_high_5
Description: NF17798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17798_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 10 - 489
Target Start/End: Complemental strand, 1896447 - 1895969
Alignment:
| Q |
10 |
attatactgtatgattgtagttagtgggtttaaaatgggtgttgcaattgatggatgtagcattttgcataattctctctttatttttatttgtcagatg |
109 |
Q |
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| T |
1896447 |
attagactgtatgattgtagttagtgggtttaaaatgggtgttgcaattgatggatgtagcattttgcataattctctctttatttttatttgtcagatg |
1896348 |
T |
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| Q |
110 |
tattacatgattcattccatgtacctcgtgctaatgtacttgctttaagtgggggcaattgggcccttaagttggttgaatttcaattgctactgtgcta |
209 |
Q |
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| T |
1896347 |
tattacatgattcattccatgtacctcgtgctaatgtacttactttaagtgggggcaattgggcccttaagttggttgaatttcaattgctactgtgcta |
1896248 |
T |
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| Q |
210 |
attaagaacaaattaggttgctaatgagtatctgtgtgagtaaattgcacatgtatatgtctcttaactgatacttctgtttcaccaatgttattatcat |
309 |
Q |
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| T |
1896247 |
attaagaacaaattaggttgctaatgagtatctgtgtgagtaaattgcacatgtatatgtctcttaactgatacttctgtttcaccaatgttattatcat |
1896148 |
T |
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| Q |
310 |
cattccttcnnnnnnnnnnnnnnnntgttattatcaatttatcatcaattataattatgaataattcaactgtatgataagtatcctcatgctttgatag |
409 |
Q |
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| T |
1896147 |
cattccttc-aaaaaagaaaaaaaatgttattatcaatttatcatcaattataattatgaataattcaactgtatgataagtatcctcatgctttgatag |
1896049 |
T |
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| Q |
410 |
tcacattaattaatcagggccacaaaatatcaatttatctttttcagtaataaaacatcaattcattttcaagcaaactc |
489 |
Q |
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| T |
1896048 |
tcacattaattaatcagggccacaaaatatcaatttatctttttcagtaataaaacatcaattcattttcaagcaaactc |
1895969 |
T |
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