View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17798_low_10 (Length: 485)
Name: NF17798_low_10
Description: NF17798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17798_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 31896505 - 31896971
Alignment:
| Q |
1 |
ttgtacacatccttaaacccctgccacacaacaaagggagaatgcagaaggaatagaaattgaggagttaagatttcatattcaaatgatttaattttca |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31896505 |
ttgtacacatccttaaacccctgccacacaacaaattgagaatgcagaatgtatagaaattgaggagttaagatttcatattcaaatgatttaattttca |
31896604 |
T |
|
| Q |
101 |
tgaagaatgtagtgaagttgacaggaattaacatacttcagctagaagatcagcagttgcatacacagatctcactccactttggcaaccctgaaataca |
200 |
Q |
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| T |
31896605 |
tgaagaatgtagtgaagttgacaggaattaacatacttcagctagaagatcagcagttgcatacacagatctcactccactttggcaaccctgaaataca |
31896704 |
T |
|
| Q |
201 |
aaatttggttttaatagtttgcaatttagcagtgatattcaaagaacttaagtacaaggtataatactcgtgttatagtcgtataattgaagtaaacttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31896705 |
aaatttggttttaatagtttgcaatttagcagtgatattcaaagaacttaagtacaaggtataatactcgtgttatagtcatataattgaagtaaacttc |
31896804 |
T |
|
| Q |
301 |
tattaaccataccactatgaggtgatcttctttattgcaaagagacgaaacttccttcagaaactctgggttcttcaccctccctgttttaaaaaatcac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31896805 |
tattaaccataccactatgaggtgatcttctttattgcaaagagacgaaacttccttcagaaactctgggttcttcaccctccctgtttt-aaaaatcac |
31896903 |
T |
|
| Q |
401 |
atcattttcattctaacaattgaatttacaaaccttcactaaataaagaatacaaaaaatgtttcaat |
468 |
Q |
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|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31896904 |
atgattttcattctaagaattgaatttacaaaccttcactaaataaagaatacaaaaaatgtttcaat |
31896971 |
T |
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