View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17798_low_13 (Length: 354)

Name: NF17798_low_13
Description: NF17798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17798_low_13
NF17798_low_13
[»] chr3 (3 HSPs)
chr3 (139-336)||(39950797-39950994)
chr3 (16-94)||(39950719-39950797)
chr3 (130-241)||(6473536-6473648)
[»] chr8 (2 HSPs)
chr8 (134-329)||(7406471-7406666)
chr8 (20-94)||(7406394-7406468)
[»] chr1 (1 HSPs)
chr1 (38-100)||(20415951-20416013)
[»] chr4 (3 HSPs)
chr4 (125-170)||(27007189-27007234)
chr4 (125-187)||(41908153-41908215)
chr4 (19-100)||(41908203-41908284)
[»] chr2 (2 HSPs)
chr2 (38-100)||(22381880-22381941)
chr2 (38-100)||(22913906-22913967)
[»] chr5 (1 HSPs)
chr5 (130-241)||(15029978-15030090)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 139 - 336
Target Start/End: Original strand, 39950797 - 39950994
Alignment:
Q  139 taaagtgaggtgtatagaccaaccgtcaacacataaagaattcaagaacaacgattcattgtaacaaccacaaacataatgtatctttcgagccaaagag 238  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||    
T  39950797 taaattgaggtgtataaaccaaccgtcaacacataaagaattcaagaacaacatttcattgtaacaaccacaaacataatgtatctttcgagctaaagag 39950896  T
Q  239 tcccaactcaaacaaagcagacttaagtgagtgtttaaagcatctaaatagacatatgaatcgcctgtcaacacagaagcgattcaagatcaatttgt 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||    
T  39950897 tcccaactcaaacaaagcagacttaagtgagtgtttaaagcatctaaacagacatatgaatcgtctgtcaacacaaaagcgattcaagatccatttgt 39950994  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 39950719 - 39950797
Alignment:
Q  16 atgaacctaactcattaaatttacacaaagtatacgtcaactcaatcagataatacgaaaaaatgaaaacaacactagt 94  Q
    ||||| ||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||| | ||||||||||||    
T  39950719 atgaatctaactcattaaatttacacagagtatatgtcaactcaatcaggtaatacgaaaaaataagaacaacactagt 39950797  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 241
Target Start/End: Original strand, 6473536 - 6473648
Alignment:
Q  130 gtgaatgtttaaagtgaggtgtatagaccaaccgtcaacacataaagaattcaagaa-caacgattcattgtaacaaccacaaacataatgtatctttcg 228  Q
    |||||||| |||  || ||||||| ||||||||||||||||  || | || |||||| |||| | || ||| |||||| ||||  ||||||| |||||||    
T  6473536 gtgaatgtctaacttgcggtgtatggaccaaccgtcaacacgaaatggatccaagaaccaacaactctttgcaacaacaacaagaataatgtctctttcg 6473635  T
Q  229 agccaaagagtcc 241  Q
    ||| |||||||||    
T  6473636 agctaaagagtcc 6473648  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 329
Target Start/End: Original strand, 7406471 - 7406666
Alignment:
Q  134 atgtttaaagtgaggtgtatagaccaaccgtcaacacataaagaattcaagaa-caacgattcattgtaacaaccacaaacataatgtatctttcgagcc 232  Q
    |||| |||| || ||||||| ||||||||||||||||| || ||||||||||| |||| | |  ||| |||||| |||| ||||| || ||||| |||||    
T  7406471 atgtctaaaatgtggtgtatggaccaaccgtcaacacaaaacgaattcaagaaccaacaactacttgcaacaacaacaagcataacgtctcttttgagcc 7406570  T
Q  233 aaagagtcccaactcaaacaaagcagacttaagtgagtgtttaaagcatctaaatagacatatgaatcgcctgtcaacacagaagcgattcaagatc 329  Q
    ||| ||||| |  ||||||||||| ||| |||||||||||||| ||||||||||  | | ||||||||| ||  ||||||||| ||| | |||||||    
T  7406571 aaaaagtccaacatcaaacaaagcggac-taagtgagtgtttagagcatctaaactggcgtatgaatcgtctaccaacacagaggcgttccaagatc 7406666  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 7406394 - 7406468
Alignment:
Q  20 acctaactcattaaatttacacaaagtatacgtcaactcaatcagataatacgaaaaaatgaaaacaacactagt 94  Q
    ||||||| || |||||| | ||||||| || |||||||||||||| | ||||||||||||||||||||| |||||    
T  7406394 acctaacccagtaaattcatacaaagtgtatgtcaactcaatcaggtgatacgaaaaaatgaaaacaacgctagt 7406468  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 20415951 - 20416013
Alignment:
Q  38 acacaaagtatacgtcaactcaatcagataatacgaaaaaatgaaaacaacactagtgaatgt 100  Q
    ||||||||| ||||||||| ||||||| | |||||||||||| ||||||||||| ||| ||||    
T  20415951 acacaaagtgtacgtcaacccaatcaggtgatacgaaaaaataaaaacaacactggtggatgt 20416013  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 27007189 - 27007234
Alignment:
Q  125 cactagtgaatgtttaaagtgaggtgtatagaccaaccgtcaacac 170  Q
    ||||||||||||| ||||||| ||||||| ||||||||||||||||    
T  27007189 cactagtgaatgtctaaagtgcggtgtatggaccaaccgtcaacac 27007234  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 41908215 - 41908153
Alignment:
Q  125 cactagtgaatgtttaaagtgaggtgtatagaccaaccgtcaacacataaagaattcaagaac 187  Q
    |||||||| |||| ||||||| |  |||| ||||||||||||||||| || ||||||||||||    
T  41908215 cactagtggatgtctaaagtgcgacgtatggaccaaccgtcaacacaaaacgaattcaagaac 41908153  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 41908284 - 41908203
Alignment:
Q  19 aacctaactcattaaatttacacaaagtatacgtcaactcaatcagataatacgaaaaaatgaaaacaacactagtgaatgt 100  Q
    |||||||| || |||||  ||||||||| || ||  || ||||||| | |||||||| ||||||||||||||||||| ||||    
T  41908284 aacctaacccagtaaatccacacaaagtgtaggtttacccaatcaggtgatacgaaagaatgaaaacaacactagtggatgt 41908203  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 22381941 - 22381880
Alignment:
Q  38 acacaaagtatacgtcaactcaatcagataatacgaaaaaatgaaaacaacactagtgaatgt 100  Q
    ||||||||| || |||||| ||||||| |||||||||||||| |||||| |||||||| ||||    
T  22381941 acacaaagtgtatgtcaacccaatcaggtaatacgaaaaaat-aaaacagcactagtggatgt 22381880  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 22913967 - 22913906
Alignment:
Q  38 acacaaagtatacgtcaactcaatcagataatacgaaaaaatgaaaacaacactagtgaatgt 100  Q
    ||||||||| || |||||| ||||||| |||||||||||||| |||||| |||||||| ||||    
T  22913967 acacaaagtgtatgtcaacccaatcaggtaatacgaaaaaat-aaaacagcactagtggatgt 22913906  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 241
Target Start/End: Original strand, 15029978 - 15030090
Alignment:
Q  130 gtgaatgtttaaagtgaggtgtatagaccaaccgtcaacacataaagaattcaagaa-caacgattcattgtaacaaccacaaacataatgtatctttcg 228  Q
    |||||||| |||  || ||||||| ||||||||||||||||| || | || |||||| |||| | || |||  ||||| |||| ||||| || |||||||    
T  15029978 gtgaatgtctaacttgcggtgtatggaccaaccgtcaacacaaaatggatccaagaaccaacaactccttgcgacaacaacaagcataacgtctctttcg 15030077  T
Q  229 agccaaagagtcc 241  Q
    ||||||| |||||    
T  15030078 agccaaacagtcc 15030090  T

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