View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17798_low_14 (Length: 326)
Name: NF17798_low_14
Description: NF17798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17798_low_14 |
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| [»] scaffold0272 (1 HSPs) |
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| [»] scaffold0016 (3 HSPs) |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 21 - 310
Target Start/End: Complemental strand, 33715380 - 33715091
Alignment:
| Q |
21 |
ctaatgtagaaggaaaagacagccttgaaattaccttcactaccgcgtatgacaccaccgcagccagcaactcctctgtcaattgccacaaaatctgctg |
120 |
Q |
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| T |
33715380 |
ctaatgtagaaggaaaagacagccttgaaattaccttcactaccgcgtatgacaccaccacagccagcaactcctctgtcattcgccacaaaatctgctg |
33715281 |
T |
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| Q |
121 |
gaggttacttccttctactatttaccggatttccatctctcatggcataaatagtactagcaatgtgcgaaggagggattcctcgtgtacattacatcgc |
220 |
Q |
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| T |
33715280 |
gaggttacttccttctactatttaccggatttccatctctcatggcataaatagtactagcaatgtgcgaaggagggattcctcgtgtacattacatcgc |
33715181 |
T |
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| Q |
221 |
agaaaatcgttatcaacacaagaaacaagccgcgcaacacattttcttctatcattaatttaataaaaactttgatgttaataccctatg |
310 |
Q |
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| T |
33715180 |
agaaaatcgttatcaacacaagaaacaagctgcccaacacattttcttctatcattaatttaataaaaactttgatgttaataccctatg |
33715091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 21183467 - 21183388
Alignment:
| Q |
21 |
ctaatgtagaaggaaaagacagccttgaaattaccttcactaccgcgtatgacaccaccgcagccagcaactcctctgtc |
100 |
Q |
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| T |
21183467 |
ctaatgtagacggaaaagacaacattgaaattaccttcactatcacatatgacaccaccgcagtcagcaactcctttgtc |
21183388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 21137545 - 21137482
Alignment:
| Q |
21 |
ctaatgtagaaggaaaagacagccttgaaattaccttcactaccgcgtatgacaccaccgcagc |
84 |
Q |
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| T |
21137545 |
ctaatgtagaaggaaaagacagccatgaaattaccttcacaattgcgtatgacaccaccacagc |
21137482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 21313210 - 21313170
Alignment:
| Q |
21 |
ctaatgtagaaggaaaagacagccttgaaattaccttcact |
61 |
Q |
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| T |
21313210 |
ctaatgtagaaggaaaagacagccttgaaattaccttcact |
21313170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 33704804 - 33704760
Alignment:
| Q |
46 |
tgaaattaccttcactaccgcgtatgacaccaccgcagccagcaa |
90 |
Q |
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| T |
33704804 |
tgaaattaccttcactatcgcgtatgacacctccgcagccagcaa |
33704760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 10310 - 10398
Alignment:
| Q |
22 |
taatgtagaaggaaaagacagccttgaaattaccttcactaccgcgtatgacaccaccgcagccagcaactcctctgtcaattgccaca |
110 |
Q |
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| T |
10310 |
taatgtagagggaaaagacagccttgaaattaccttcactttcgcgtatgccaacacggcagccagcaactcctctgtcgatcgccaca |
10398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 71608 - 71696
Alignment:
| Q |
22 |
taatgtagaaggaaaagacagccttgaaattaccttcactaccgcgtatgacaccaccgcagccagcaactcctctgtcaattgccaca |
110 |
Q |
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| T |
71608 |
taatgtagagggaaaagacagccttgaaattaccttcactttcgcgtatgccaacacggcagccagcaactcctctgtcgatcgccaca |
71696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 46763 - 46842
Alignment:
| Q |
21 |
ctaatgtagaaggaaaagacagccttgaaattaccttcactaccgcgtatgacaccaccgcagccagcaactcctctgtc |
100 |
Q |
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| T |
46763 |
ctaatatagaaggaaaagacagccttgaaattaacttcactactgcgtatgataccaccgcagctagcaacttctctgtc |
46842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 61413 - 61492
Alignment:
| Q |
21 |
ctaatgtagaaggaaaagacagccttgaaattaccttcactaccgcgtatgacaccaccgcagccagcaactcctctgtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| || | | |||||||| |||||| ||| ||| |||| |||| |
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| T |
61413 |
ctaatgtagaaggaaaagacagccttgaaattaccttcggtatcacatatgacactaccgcatccatcaattcctttgtc |
61492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 13263 - 13206
Alignment:
| Q |
43 |
ccttgaaattaccttcactaccgcgtatgacaccaccgcagccagcaactcctctgtc |
100 |
Q |
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| T |
13263 |
ccttgaaattaccttccttatcgcatatgataccaccgcagccaacaaatcctctgtc |
13206 |
T |
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