View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17798_low_3 (Length: 625)
Name: NF17798_low_3
Description: NF17798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17798_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 16 - 529
Target Start/End: Original strand, 28703071 - 28703585
Alignment:
| Q |
16 |
aggaggagaccatgcaaaatgacgactaagctaaagacatcctatgtctatttcaagtaatttcgtgatggcaacacataa---ttaaggacaatatgca |
112 |
Q |
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| T |
28703071 |
aggaggagaccatgcaaaatgacgactaagctaaagacatcctatgtctatttcaagtaatttcgtgatggcaacacataaatattaaggacaatatgca |
28703170 |
T |
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| Q |
113 |
tatgcttcttttgcctctgcatacttatataatcacttttacatttgccaataatttccatttcatccatcagttgttatgatttaagattgatttaact |
212 |
Q |
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| T |
28703171 |
tatgcttcttttgcctctgcatacttatataatcacttttacatttgccaataattgccatttcatccatcaattgttatgatttaagattgatttaatt |
28703270 |
T |
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| Q |
213 |
atgatcgatgaattgtcggtc-ggtctcagaatatgttatttaattaaagatagttgttttatgaatttaacactgaaaataatatcctcgtttaaaggt |
311 |
Q |
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| T |
28703271 |
atgatcgatgaattgtcggcctggtctcagaatatgttatttaattaaagatagttgttttatgaatttaacactgaaaataatatcctcgtttaaaggt |
28703370 |
T |
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| Q |
312 |
atggatgacgttttatcccaagtttggaaactcactta-aannnnnnnnnnnnnnnnnatctcaatccactattatttaatctttttcagacgtttgcaa |
410 |
Q |
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| T |
28703371 |
atggatgacgttttatcctaagtttggaaactcatttagatttattttttttttttttatctcaatccactattatttaatctttttcagacgtttgcaa |
28703470 |
T |
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| Q |
411 |
ggatcattcaaagttcgatcacaattgattctaggtttaggaatgnnnnnnnnnnnaagttgcttacttnnnnnnnntagttatgtaaacaattatttga |
510 |
Q |
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| T |
28703471 |
ggatcattcaaaattcgatcacaattgattctaggtttaggaatg----tttttttaagttgcttacttaaaaaaaatagttatgtaaacaattatttga |
28703566 |
T |
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| Q |
511 |
gtttaatgtctaaactaat |
529 |
Q |
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| T |
28703567 |
gtttaatgtctaaagtaat |
28703585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 526 - 610
Target Start/End: Original strand, 28703620 - 28703704
Alignment:
| Q |
526 |
taatcaagtttttaagcatttcaaagaaagttttccatgtatcgttctatattcttctgaaaatgagtttaaatttctattttat |
610 |
Q |
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| T |
28703620 |
taatcaagttttcaagcatctcaaagccagttttccatgtatcgttctatattcttctgaaaatgagtttaaatttctattttat |
28703704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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