View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17798_low_4 (Length: 574)
Name: NF17798_low_4
Description: NF17798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17798_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 18 - 558
Target Start/End: Original strand, 2503651 - 2504194
Alignment:
| Q |
18 |
atagcactttcatctgaaccatgtatgttgttaggagtgagtgttggagttatttgtaaccttgtttttcctgaatggttgataaccttaatgtttgctg |
117 |
Q |
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| T |
2503651 |
atagcactttcatctgaaccatgtatgttgttaggagtgagtgttggagttatttgtaaccttgtttttcctgaatggttgataaccttaatgtttgctg |
2503750 |
T |
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| Q |
118 |
tttttcttgcttggtctacctcaaaaacttgtaaaagtggggttatgttttggaatattgaatcagaagagataaggaaaaatattggagttcaggaaat |
217 |
Q |
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| T |
2503751 |
tttttcttgcttggtctacctcaaaaacttgtaaaagtggggttatgttttggaatattgaatcagaagagataaggaaaaatattggagttcaggaaat |
2503850 |
T |
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| Q |
218 |
tgaaaaagggttgctagaaaatgagattactatgcacaaggataatgatgggtcaaaaactgttgaagagaatcttgttttggtccctcaagaaaattct |
317 |
Q |
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| T |
2503851 |
tgaaaaagggttgctagaaaatgagattactatgcacaaggataatgatgggtcaaaaactgttgaagagaatcttgttttggtccctcaagaaaattct |
2503950 |
T |
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| Q |
318 |
agcaagttgtgtatcccttggttgaaattaggggtgttactcttgatttggttctctttcttttccatttatcttattcgtggcaatggatatggatagg |
417 |
Q |
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| T |
2503951 |
agcaagttgtgtatcccttggttgaaattaggggtgttactcttgatttggttctctttcttttccatttatcttattcgtggcaatggatatggacagg |
2504050 |
T |
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| Q |
418 |
tgaggtctcttttttcttcaaccttcatggtccaatcatgaggctac---ttattattaaatcttctaaacaaattttaattagatgcatgatttggtta |
514 |
Q |
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| T |
2504051 |
tgaggtctcttttttcttcaaccttcatggtccaatcatgaggctacttattattattaaattttctaaacaaattttaattagatgcatgatttggtta |
2504150 |
T |
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| Q |
515 |
gcatactagaattggaattggacaaatactaacaatgatatata |
558 |
Q |
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| T |
2504151 |
gcatactagaattggaattgaacaaatactaacaatgatatata |
2504194 |
T |
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