View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17798_low_5 (Length: 560)
Name: NF17798_low_5
Description: NF17798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17798_low_5 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 320 - 560
Target Start/End: Complemental strand, 4872958 - 4872718
Alignment:
| Q |
320 |
caactttaaatagttcaagagtaaatgtaatagggttgtccaatggaaagtttgttaagtagcaaagtttccatgatttttgcaatcttactaactcttt |
419 |
Q |
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| T |
4872958 |
caactttaaatagttcaagagtaaatgtaatatggttgtccaatggaaagtttgttaaatagcaaagtttccatgatttttgcaatcttactaactcttt |
4872859 |
T |
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| Q |
420 |
gacctttgtatagttcatcaatgattgaatgataactagcaacgttaggttttaccatcacagcaactacagttttagcatctttaaactctccatcagt |
519 |
Q |
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| T |
4872858 |
gacctttgtatagttcatcaatgattgaatgatacctagcaacgttaggttttaccatcacagcaactacagttttagcatctttaacctctccatcagt |
4872759 |
T |
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| Q |
520 |
aacaaaagcagaggcaagggcaacattaaaaatttgacagg |
560 |
Q |
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| T |
4872758 |
aacaaaagcagaggcaagggcaacattaaaacttggacagg |
4872718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 158 - 326
Target Start/End: Complemental strand, 4877702 - 4877533
Alignment:
| Q |
158 |
aaagcatgtaatctaatagacctctagcaatcaa-tccgcgaacaaacaagttccgatccttatttccatagcttatggagagagcgtgcaaagttgctc |
256 |
Q |
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| T |
4877702 |
aaagcatgtaatctaatagacctctagcaatcaaatccgcgaacaaacaagttccgatccttatttccatagcttatggagagagcgtgcaaagttgctc |
4877603 |
T |
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| Q |
257 |
agcaagttatggtatgagagccaccgctgtcttttggtaacttcgatgcttcaccaaacaagccaacttt |
326 |
Q |
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| T |
4877602 |
agcaagttatggtatgagagccaccgctgtcttttggtaacttcgatgcttcaccaaacaagccaacttt |
4877533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 4877798 - 4877690
Alignment:
| Q |
13 |
cataggcataatcaaaagcttaatcaaaaagcataaaagaagaaacataggtatctgttaatttgaaggacatatttgccttatttaacaaactagaaag |
112 |
Q |
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| T |
4877798 |
cataggcataatcaaaagcttaatcaaaaagcataaaagaagaaacataggtatctgttaatttgaaggacatatttgccttatttaacaaactagaaag |
4877699 |
T |
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| Q |
113 |
catgtaatc |
121 |
Q |
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| T |
4877698 |
catgtaatc |
4877690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 670434 - 670484
Alignment:
| Q |
134 |
atagttctttaattagcaaaccaaaaagcatgtaatctaatagacctctag |
184 |
Q |
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| T |
670434 |
atagttctttaattagaaaactggaaagcatgtaatctaatagacctctag |
670484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 2288345 - 2288395
Alignment:
| Q |
14 |
ataggcataatcaaaagcttaatcaaaaagcataaaagaagaaacataggtat |
66 |
Q |
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| T |
2288345 |
ataggcataatcaa--gcttaatcaaaaagcataaatcaagaaacataggtat |
2288395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 28326916 - 28326870
Alignment:
| Q |
128 |
aaaagcatagttctttaattagcaaac-caaaaagcatgtaatctaa |
173 |
Q |
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| T |
28326916 |
aaaagcatagtcctttaattagcaaactaaaaaagcatgtaatctaa |
28326870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 47569592 - 47569542
Alignment:
| Q |
284 |
tgtcttttggtaacttcgatgcttcaccaaacaagccaactttaaatagtt |
334 |
Q |
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| T |
47569592 |
tgtctttggataacgtcaatgcttcaccaaacaagcccactttaaatagtt |
47569542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 469 - 527
Target Start/End: Original strand, 47924738 - 47924796
Alignment:
| Q |
469 |
ttttaccatcacagcaactacagttttagcatctttaaactctccatcagtaacaaaag |
527 |
Q |
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| T |
47924738 |
ttttaccatcacagccactacagttttagcatctttaacctctccttcagtaactaaag |
47924796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 206
Target Start/End: Original strand, 47923009 - 47923090
Alignment:
| Q |
128 |
aaaagcatagttctttaattagcaaaccaaaaagcatgtaatc---taatagacctctagcaatcaatccgcgaacaaacaa |
206 |
Q |
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| T |
47923009 |
aaaatcatagttctttgattagcaaaccaataagcatataatctgataatagacctctagcaatcaacccacgaacgaacaa |
47923090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 9066898 - 9066862
Alignment:
| Q |
128 |
aaaagcatagttctttaattagcaaaccaaaaagcat |
164 |
Q |
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| T |
9066898 |
aaaagcatagtccttcaattagcaaaccaaaaagcat |
9066862 |
T |
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