View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17798_low_7 (Length: 546)
Name: NF17798_low_7
Description: NF17798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17798_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 108 - 409
Target Start/End: Original strand, 18082351 - 18082649
Alignment:
| Q |
108 |
ccaaaattagctaacttatgagcaatttgattagcttcctgcctttcataatcatgtattgcattgctaaaaactgatataaaagaggataaaaatgctt |
207 |
Q |
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| T |
18082351 |
ccaaaattagctaacttatgagcaatttgattagcttcatgcctttcataatcatgtattgcattgctaaaaactgatataaaagaggataaaaatgctt |
18082450 |
T |
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| Q |
208 |
aatgcagtccttaaacaagataatttctttttcattcacgtgactcattcataggga---tattccttcgtgac----ttgtttgtgtactctttctgaa |
300 |
Q |
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| T |
18082451 |
aatgcagtccttaaacaagataatttctttttcattcacgtgactcattcatagggatattattccttcgtggcttgtttgtttgtgtactctttctgaa |
18082550 |
T |
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| Q |
301 |
ttttgctgctttcaactgaaaaattgcataaagaaagctaaggtgtcaactaataagagaagtatgaggcggtgaggataaacatgagaaaaactcacgt |
400 |
Q |
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| T |
18082551 |
ttttgctgctttcaactgaaaaattgca----------taaggtgtcaactaataagagaagtatgaggcggtgaggataaacatgagaaaaactcacgt |
18082640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 250 - 398
Target Start/End: Original strand, 32180606 - 32180754
Alignment:
| Q |
250 |
actcattcatagggatattccttcgtgacttgtttgtgtactctttctgaattttgctgctttcaactgaaaaattgcataaagaaagctaaggtgtcaa |
349 |
Q |
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| T |
32180606 |
actcattcataggcatattcctttgtgtcttgtttgtgtattcttatagagtttagctgctttcgactgaaaaattgcattaagaaagccaagttgtcaa |
32180705 |
T |
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| Q |
350 |
ctaataagagaagtatgaggcggtgaggataaacatgagaaaaactcac |
398 |
Q |
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| T |
32180706 |
ctaataagagaagtatgaggcggagaggataaacatgggaataactcac |
32180754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 235 - 409
Target Start/End: Original strand, 18090119 - 18090292
Alignment:
| Q |
235 |
tttttcattcacgtgactcattcatagggatattccttcgtgacttgtttgtgtactctttctgaatt-ttgctgctttcaactgaaaaattgcataaag |
333 |
Q |
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| T |
18090119 |
ttttccattcacgtgactcattcatagggatattcctttgtg---ttcttgtgtcttgtttgtgtactcttgctgctttcaactgaaaa-ttgcataaag |
18090214 |
T |
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| Q |
334 |
aaagctaaggtgtcaactaataagagaagtatgaggcggtgaggataaacatgagaaaaac--tcacgtagttcaagg |
409 |
Q |
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| T |
18090215 |
aaagcaaaggtgtcgactaataagagaagtatgaagaggtgaggataaacatgagtataacgatcacgtagttcaagg |
18090292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 469 - 528
Target Start/End: Original strand, 18082709 - 18082768
Alignment:
| Q |
469 |
aaagaggtagagacaggtttatcagtttgtgttttcacaacagttttatgttgtgcgtca |
528 |
Q |
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| T |
18082709 |
aaagaggtagagacaggtttatcagtctgtgttttcacaacagttttatgttgtgcgtca |
18082768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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