View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17798_low_9 (Length: 517)
Name: NF17798_low_9
Description: NF17798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17798_low_9 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 277 - 517
Target Start/End: Complemental strand, 4872958 - 4872718
Alignment:
| Q |
277 |
caactttaaatagttcaagagtaaatgtaatagggttgtccaatggaaagtttgttaagtagcaaagtttccatgatttttgcaatcttactaactcttt |
376 |
Q |
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| T |
4872958 |
caactttaaatagttcaagagtaaatgtaatatggttgtccaatggaaagtttgttaaatagcaaagtttccatgatttttgcaatcttactaactcttt |
4872859 |
T |
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| Q |
377 |
gacctttgtatagttcatcaatgattgaatgataactagcaacgttaggttttaccatcacagcaactacagttttagcatctttaaactctccatcagt |
476 |
Q |
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| T |
4872858 |
gacctttgtatagttcatcaatgattgaatgatacctagcaacgttaggttttaccatcacagcaactacagttttagcatctttaacctctccatcagt |
4872759 |
T |
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| Q |
477 |
aacaaaagcagaggcaagggcaacattaaaaatttgacagg |
517 |
Q |
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| T |
4872758 |
aacaaaagcagaggcaagggcaacattaaaacttggacagg |
4872718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 115 - 283
Target Start/End: Complemental strand, 4877702 - 4877533
Alignment:
| Q |
115 |
aaagcatgtaatctaatagacctctagcaatcaa-tccgcgaacaaacaagttccgatccttatttccatagcttatggagagagcgtgcaaagttgctc |
213 |
Q |
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| T |
4877702 |
aaagcatgtaatctaatagacctctagcaatcaaatccgcgaacaaacaagttccgatccttatttccatagcttatggagagagcgtgcaaagttgctc |
4877603 |
T |
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| Q |
214 |
agcaagttatggtatgagagccaccgctgtcttttggtaacttcgatgcttcaccaaacaagccaacttt |
283 |
Q |
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| T |
4877602 |
agcaagttatggtatgagagccaccgctgtcttttggtaacttcgatgcttcaccaaacaagccaacttt |
4877533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 4877758 - 4877690
Alignment:
| Q |
10 |
agaagcataggtatctgttaatttgaaggacatatttgccttatttaacaaactagaaagcatgtaatc |
78 |
Q |
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| T |
4877758 |
agaaacataggtatctgttaatttgaaggacatatttgccttatttaacaaactagaaagcatgtaatc |
4877690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 670434 - 670484
Alignment:
| Q |
91 |
atagttctttaattagcaaaccaaaaagcatgtaatctaatagacctctag |
141 |
Q |
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| T |
670434 |
atagttctttaattagaaaactggaaagcatgtaatctaatagacctctag |
670484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 28326916 - 28326870
Alignment:
| Q |
85 |
aaaagcatagttctttaattagcaaac-caaaaagcatgtaatctaa |
130 |
Q |
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| T |
28326916 |
aaaagcatagtcctttaattagcaaactaaaaaagcatgtaatctaa |
28326870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 291
Target Start/End: Complemental strand, 47569592 - 47569542
Alignment:
| Q |
241 |
tgtcttttggtaacttcgatgcttcaccaaacaagccaactttaaatagtt |
291 |
Q |
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| T |
47569592 |
tgtctttggataacgtcaatgcttcaccaaacaagcccactttaaatagtt |
47569542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 426 - 484
Target Start/End: Original strand, 47924738 - 47924796
Alignment:
| Q |
426 |
ttttaccatcacagcaactacagttttagcatctttaaactctccatcagtaacaaaag |
484 |
Q |
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| T |
47924738 |
ttttaccatcacagccactacagttttagcatctttaacctctccttcagtaactaaag |
47924796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 163
Target Start/End: Original strand, 47923009 - 47923090
Alignment:
| Q |
85 |
aaaagcatagttctttaattagcaaaccaaaaagcatgtaatc---taatagacctctagcaatcaatccgcgaacaaacaa |
163 |
Q |
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| T |
47923009 |
aaaatcatagttctttgattagcaaaccaataagcatataatctgataatagacctctagcaatcaacccacgaacgaacaa |
47923090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 9066898 - 9066862
Alignment:
| Q |
85 |
aaaagcatagttctttaattagcaaaccaaaaagcat |
121 |
Q |
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| T |
9066898 |
aaaagcatagtccttcaattagcaaaccaaaaagcat |
9066862 |
T |
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