View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17799_high_3 (Length: 475)
Name: NF17799_high_3
Description: NF17799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17799_high_3 |
 | |
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| [»] scaffold0856 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 4 - 457
Target Start/End: Complemental strand, 5743259 - 5742809
Alignment:
| Q |
4 |
tcaacattaaaattgtcaacatctatgccttcatcatgaatactaccacaatccacaaaagcatttggaccatccatgaatgttcaattgtgggggcaat |
103 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5743259 |
tcaacattaaaattgtcaacttctatgccttcatcatgaatactaccacaatccacaaaagcatttggaccatccatgaatgttcaattgtgggggcaat |
5743160 |
T |
|
| Q |
104 |
tgacaccccaaatctgcacaaaataactcaaaatgtaagtgtggatttcatcgagataagcacacataatgtacctcacatactttgtcattagaaagaa |
203 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5743159 |
tgacaccccaaatctgcacaaaataactcaaaatgtaagtgtggacttcatcgagataagcacacataatgtacctcacatactttgtcattagaaagaa |
5743060 |
T |
|
| Q |
204 |
acatcacaacacagcagaaaaacataacggagaaatataagagaaaaattgtaatacaaatgagggtatcaaataatggggtatcaaatttaagtattag |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5743059 |
acatcacaacacagcagaaaaacataacggagaaatataagagaaaaattgtaatacaaatgagggtatcaaataatggggtatcaaatttaagtattag |
5742960 |
T |
|
| Q |
304 |
caatgtctaagtctgtaatcatgaaattaagttgagaaaattaatattgagcatagtcattatataaaacctgaatcaatttcattatttagtcaattaa |
403 |
Q |
| |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| |
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| T |
5742959 |
caatatctaagtttgtaatcatgaaattaagttgagaaaattaatattgagcatattcattataaaaaacctg---caatttcattatttagtcaattaa |
5742863 |
T |
|
| Q |
404 |
aaaatttagggtttgtgatttgaaattgggggaaaacgaaaatgatgaagggac |
457 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5742862 |
aaaatttagggtttgtgatttgaaattgggggaaaacgaaaatgatgaagggac |
5742809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 4 - 454
Target Start/End: Original strand, 33360293 - 33360725
Alignment:
| Q |
4 |
tcaacattaaaattgtcaacatctatgccttcatcatgaatactaccacaatccacaaaagcatttggaccatccatgaatgttcaattgtgggggcaat |
103 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33360293 |
tcaacattaaagttgtcaacttctatgccttcatcatgaatactaccactatccacaaaagcatttggattatccatgaatgttcaattgtgggggcaat |
33360392 |
T |
|
| Q |
104 |
tgacaccccaaatctgcacaaaataactcaaaatgtaagtgtggatttcatcgagataagcacacataatgtacctcacatactttgtcattagaaagaa |
203 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33360393 |
tgacaccccaaatctgcacaaaataactcaaaatgtaagcatggacttcgtcgagataagcacacataatgtacctcacatactttgtcattagaaagaa |
33360492 |
T |
|
| Q |
204 |
acatcacaacacagcagaaaaacataacggagaaatataagagaaaaattgtaatacaaatgagggtatcaaataatggggtatcaaatttaagtattag |
303 |
Q |
| |
|
|||| ||||||| |||||||||||||| ||||||||||||||||||||||||| |||| || |||||||| ||||||||||||| |
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| T |
33360493 |
acatttcaacacaacagaaaaacataac--agaaatataagagaaaaattgtaat-caaagga---------------gggtatcagatttaagtattag |
33360574 |
T |
|
| Q |
304 |
caatgtctaagtctgtaatcatgaaattaagttgagaaaattaatattgagcatagtcattatataaaacctgaatcaatttcattatttagtcaattaa |
403 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
33360575 |
caatgtctaagtctgtaatcatgaaattaagttgagaaaattaatattgagcatattcattatataaaacctgaatcaatttcattatttagtcaattca |
33360674 |
T |
|
| Q |
404 |
aaaatttagggtttgtgatttgaaattgggggaaaacgaaaatgatgaagg |
454 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33360675 |
aaaatttagggtttgtgatttaaaattgggggaaaacgaaaatgatgaagg |
33360725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 279 - 454
Target Start/End: Original strand, 37605375 - 37605550
Alignment:
| Q |
279 |
atggggtatcaaatttaagtattagcaatgtctaagtctgtaatcatgaaattaagttgagaaaattaatattgagcatagtcattatataaaacctgaa |
378 |
Q |
| |
|
||||||||| | |||||||||||||| ||| |||||| |||||||| |||||||||||||||||||||||||| ||| ||| |||||||||||| || |
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| T |
37605375 |
atggggtattagatttaagtattagctgtgttgaagtctataatcatgcaattaagttgagaaaattaatattgaatatattcagtatataaaaccttaa |
37605474 |
T |
|
| Q |
379 |
tcaatttcattatttagtcaattaaaaaatttagggtttgtgatttgaaattgggggaaaacgaaaatgatgaagg |
454 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||| | |||||||||| ||||||||||||||| ||||||| |
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| T |
37605475 |
tcaatttcatcatttagtcaattcaaaaatttagggtttttaatttgaaatttggggaaaacgaaaataatgaagg |
37605550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 37604409 - 37604532
Alignment:
| Q |
4 |
tcaacattaaaattgtcaacatctatgccttcatcatgaatactaccacaatccacaaaagcatttggaccatccatgaatgttcaattgtgggggcaat |
103 |
Q |
| |
|
||||||||||| ||| |||| ||||| |||||||||| |||||||||||||||||||| | |||||| || |||||| ||| |||||||||||| | ||| |
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|
| T |
37604409 |
tcaacattaaagttgccaacttctataccttcatcatcaatactaccacaatccacaagaacatttgaactatccataaattttcaattgtgggtgaaat |
37604508 |
T |
|
| Q |
104 |
tgacaccccaaatctgcacaaaat |
127 |
Q |
| |
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|| ||| ||||| ||||||||||| |
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|
| T |
37604509 |
tggcacaccaaaactgcacaaaat |
37604532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 4 - 454
Target Start/End: Original strand, 18084569 - 18085001
Alignment:
| Q |
4 |
tcaacattaaaattgtcaacatctatgccttcatcatgaatactaccacaatccacaaaagcatttggaccatccatgaatgttcaattgtgggggcaat |
103 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
18084569 |
tcaacattaaagttgtcaacttctatgccttcatcatgaatactaccactatccacaaaagcatttggattatccatgaatgttcaattgtgggggcaat |
18084668 |
T |
|
| Q |
104 |
tgacaccccaaatctgcacaaaataactcaaaatgtaagtgtggatttcatcgagataagcacacataatgtacctcacatactttgtcattagaaagaa |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18084669 |
tgacaccccaaatctgcacaaaataactcaaaatgtaagcatggacttcgtcgagataagcacacataatgtacctcacatactttgtcattagaaagaa |
18084768 |
T |
|
| Q |
204 |
acatcacaacacagcagaaaaacataacggagaaatataagagaaaaattgtaatacaaatgagggtatcaaataatggggtatcaaatttaagtattag |
303 |
Q |
| |
|
|||| ||||||| |||||||||||||| ||||||||||||||||||||||||| |||| || |||||||| ||||||||||||| |
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|
| T |
18084769 |
acatttcaacacaacagaaaaacataac--agaaatataagagaaaaattgtaat-caaagga---------------gggtatcagatttaagtattag |
18084850 |
T |
|
| Q |
304 |
caatgtctaagtctgtaatcatgaaattaagttgagaaaattaatattgagcatagtcattatataaaacctgaatcaatttcattatttagtcaattaa |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
18084851 |
caatgtctaagtctgtaatcatgaaattaagttgagaaaattaatattgagcatattcattatataaaacctgaatcaatttcattatttagtcaattca |
18084950 |
T |
|
| Q |
404 |
aaaatttagggtttgtgatttgaaattgggggaaaacgaaaatgatgaagg |
454 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
18084951 |
aaaatttagggtttgtgatttaaaattgggggaaaacgaaaatgatgaagg |
18085001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0856 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 4 - 454
Target Start/End: Original strand, 540 - 972
Alignment:
| Q |
4 |
tcaacattaaaattgtcaacatctatgccttcatcatgaatactaccacaatccacaaaagcatttggaccatccatgaatgttcaattgtgggggcaat |
103 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
540 |
tcaacattaaagttgtcaacttctatgccttcatcatgaatactaccactatccacaaaagcatttggattatccatgaatgttcaattgtgggggcaat |
639 |
T |
|
| Q |
104 |
tgacaccccaaatctgcacaaaataactcaaaatgtaagtgtggatttcatcgagataagcacacataatgtacctcacatactttgtcattagaaagaa |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
640 |
tgacaccccaaatctgcacaaaataactcaaaatgtaagcatggacttcgtcgagataagcacacataatgtacctcacatactttgtcattagaaagaa |
739 |
T |
|
| Q |
204 |
acatcacaacacagcagaaaaacataacggagaaatataagagaaaaattgtaatacaaatgagggtatcaaataatggggtatcaaatttaagtattag |
303 |
Q |
| |
|
|||| ||||||| |||||||||||||| ||||||||||||||||||||||||| |||| || |||||||| ||||||||||||| |
|
|
| T |
740 |
acatttcaacacaacagaaaaacataac--agaaatataagagaaaaattgtaat-caaagga---------------gggtatcagatttaagtattag |
821 |
T |
|
| Q |
304 |
caatgtctaagtctgtaatcatgaaattaagttgagaaaattaatattgagcatagtcattatataaaacctgaatcaatttcattatttagtcaattaa |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| | |
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|
| T |
822 |
caatgtctaagtctgtaatcatgaaattaagttgagaaaattaatattgagcatattcattatataaaacctgaatcaatttcattatttagtaaattca |
921 |
T |
|
| Q |
404 |
aaaatttagggtttgtgatttgaaattgggggaaaacgaaaatgatgaagg |
454 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
922 |
aaaatttagggtttgtgatttaaaattgggggaaaacgaaaatgatgaagg |
972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 279 - 454
Target Start/End: Complemental strand, 27658688 - 27658514
Alignment:
| Q |
279 |
atggggtatcaaatttaagtattagcaatgtctaagtctgtaatcatgaaattaagttgagaaaattaatattgagcatagtcattatataaaacctgaa |
378 |
Q |
| |
|
||||||||| | |||||||||||||| | | |||||| |||||||| |||||||||||||||||||||||||| |||| ||| |||||||| | | || |
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|
| T |
27658688 |
atggggtattagatttaagtattagctgttttgaagtctataatcatgcaattaagttgagaaaattaatattgaacatattcagtatataaatctt-aa |
27658590 |
T |
|
| Q |
379 |
tcaatttcattatttagtcaattaaaaaatttagggtttgtgatttgaaattgggggaaaacgaaaatgatgaagg |
454 |
Q |
| |
|
|||||||||| |||| ||||||| ||||||||||||||| | |||||||||| ||||||||||||||| ||||||| |
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|
| T |
27658589 |
tcaatttcatcatttcgtcaattcaaaaatttagggtttttaatttgaaatttggggaaaacgaaaataatgaagg |
27658514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 35 - 134
Target Start/End: Complemental strand, 27659636 - 27659537
Alignment:
| Q |
35 |
catcatgaatactaccacaatccacaaaagcatttggaccatccatgaatgttcaattgtgggggcaattgacaccccaaatctgcacaaaataactcaa |
134 |
Q |
| |
|
|||||| ||||||||||||||||| || |||||||| || ||||| ||| |||||||||||| ||||||| ||| ||||| ||||||||||| |||||| |
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|
| T |
27659636 |
catcatcaatactaccacaatccaaaacagcatttgaactatccacaaattttcaattgtgggtgcaattggcacaccaaaactgcacaaaatcactcaa |
27659537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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