View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17799_low_2 (Length: 736)

Name: NF17799_low_2
Description: NF17799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17799_low_2
NF17799_low_2
[»] chr4 (1 HSPs)
chr4 (33-718)||(2578957-2579616)


Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 33 - 718
Target Start/End: Complemental strand, 2579616 - 2578957
Alignment:
Q  33 attatactaaaaaccaaagctgtctctagagcacaagaagtatcggaagagactaaaaagctatcaattacagcgcaattagactataaaactagtcgaa 132  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||| |||||||||||||||| |||||    
T  2579616 attatgctaaaaactaaagctgtctctagagcacaagaagtatcggaagagactaaaaggccatcaattacaccgcagttagactataaaactaatcgaa 2579517  T
Q  133 aaaacagtagagnnnnnnnttacacaatagtctgtaaacaacgcacatggtcgaaccacnnnnnnnnntagtcgaattttaatcagtccacatctcataa 232  Q
    |||||| ||||        |||||||| ||| |||||||||||||||||||| ||| ||         |||||||||| |||||| ||||||| ||||||    
T  2579516 aaaacaataga-aaaaaaattacacaacagtttgtaaacaacgcacatggtcaaactaccaaaaaaaatagtcgaattctaatcactccacatttcataa 2579418  T
Q  233 tgaattggacaaccagtggattatacaaaggaattgtgtcacttttcattctcaaagnnnnnnnnntagccttaattaattgaaagatgatcattaccat 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||         || |||||||||||||||||||||||||||||||    
T  2579417 tgaattggacaaccagtggattatacaaaggaattgtgtcacttttcattctctaagaaaaaaa--taaccttaattaattgaaagatgatcattaccat 2579320  T
Q  333 gtttcaagtgtggcaaagaatctttccaacctatcatgaagaaaatagagaattcccaacagtgacacaagtgcattgatcaataacaagaatggattga 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||                     ||    
T  2579319 gtttcaagtgtggcaaagaatctttccaacctatcatgaagaaaatagagaattcccaacagtggcacaagtgcatt---------------------ga 2579241  T
Q  433 tcaataacaagaatggatccatgaattttaatcagtcgagagaaagattgtatactataacnnnnnnnnataaaaattcatctatgcaaaagtgataaaa 532  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  2579240 tcaataacaagaatggatccatgaattttaatcagtggagagaaagattgtatactataactttttt--ataaaaattcatctatgcaaaagtgataaaa 2579143  T
Q  533 taatgacattnnnnnnnnnnnnnnn-ttggagatggaaaaagtatacaagaaatatgcttaaaaattcaattgttttctattagggatgatagataatat 631  Q
    ||||||||||                |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2579142 taatgacattaaaaaaaaacgaaaaattggagatggaaaaagtatacaagaa-tatgcttaaaaattcaattgttttctattagggatgatagataatat 2579044  T
Q  632 tggaatcatattcgttgaaatccttacaaaaaacatcatggataattactcgtaaaagtggatggatacccatactaaggtactcac 718  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2579043 tggaatcatattcgttgaattccttaaaaaaaacatcatggataattactcgtaaaagtggatggatacccatactaaggtactcac 2578957  T

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