View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17799_low_5 (Length: 382)

Name: NF17799_low_5
Description: NF17799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17799_low_5
NF17799_low_5
[»] chr5 (42 HSPs)
chr5 (18-370)||(16610387-16610740)
chr5 (232-335)||(31706387-31706490)
chr5 (233-322)||(704490-704579)
chr5 (252-329)||(29651767-29651844)
chr5 (232-315)||(29994652-29994735)
chr5 (156-234)||(31659582-31659660)
chr5 (257-322)||(27482646-27482711)
chr5 (156-234)||(19929638-19929717)
chr5 (148-229)||(833991-834070)
chr5 (156-230)||(9524091-9524165)
chr5 (156-234)||(14000663-14000741)
chr5 (156-226)||(19930465-19930535)
chr5 (155-205)||(36700974-36701024)
chr5 (176-234)||(39956005-39956063)
chr5 (244-297)||(21041995-21042048)
chr5 (162-214)||(11131728-11131780)
chr5 (232-300)||(26778716-26778784)
chr5 (158-234)||(28766484-28766560)
chr5 (182-234)||(33168470-33168522)
chr5 (148-234)||(41613236-41613319)
chr5 (150-233)||(936320-936403)
chr5 (172-234)||(6062191-6062253)
chr5 (156-234)||(7463915-7463993)
chr5 (159-201)||(19128355-19128397)
chr5 (255-301)||(32252176-32252222)
chr5 (156-205)||(3295830-3295878)
chr5 (161-234)||(24836945-24837018)
chr5 (156-229)||(33629557-33629630)
chr5 (174-234)||(23270848-23270908)
chr5 (256-312)||(25942600-25942656)
chr5 (232-300)||(39839938-39840006)
chr5 (158-205)||(8990577-8990624)
chr5 (231-314)||(25326156-25326239)
chr5 (154-205)||(43370402-43370453)
chr5 (178-212)||(8942628-8942662)
chr5 (232-321)||(19314979-19315068)
chr5 (231-300)||(27843500-27843569)
chr5 (156-205)||(32870139-32870188)
chr5 (148-205)||(38445361-38445418)
chr5 (232-312)||(804383-804463)
chr5 (148-191)||(9051268-9051312)
chr5 (256-312)||(16518372-16518428)
[»] chr2 (35 HSPs)
chr2 (236-370)||(8090506-8090640)
chr2 (244-334)||(40638766-40638856)
chr2 (232-315)||(31640273-31640356)
chr2 (232-334)||(20948142-20948244)
chr2 (254-327)||(9420722-9420795)
chr2 (231-300)||(27009231-27009300)
chr2 (156-233)||(34753399-34753476)
chr2 (232-316)||(45131107-45131191)
chr2 (155-234)||(11653153-11653232)
chr2 (156-205)||(24004381-24004430)
chr2 (156-231)||(9169947-9170022)
chr2 (156-234)||(25915017-25915095)
chr2 (156-214)||(36802602-36802660)
chr2 (156-229)||(13450352-13450425)
chr2 (155-234)||(15265766-15265845)
chr2 (156-231)||(35916904-35916979)
chr2 (156-234)||(9191964-9192042)
chr2 (155-205)||(33133801-33133851)
chr2 (156-234)||(41014472-41014550)
chr2 (156-205)||(15508791-15508840)
chr2 (165-230)||(21564248-21564313)
chr2 (156-229)||(21885130-21885203)
chr2 (257-321)||(30505774-30505838)
chr2 (170-234)||(41633373-41633437)
chr2 (154-205)||(20111235-20111286)
chr2 (257-316)||(38409046-38409105)
chr2 (155-229)||(33134330-33134404)
chr2 (255-321)||(37738061-37738127)
chr2 (156-234)||(38147818-38147896)
chr2 (155-228)||(4160322-4160395)
chr2 (176-229)||(12617061-12617114)
chr2 (156-233)||(41384300-41384376)
chr2 (269-317)||(9933071-9933119)
chr2 (231-303)||(33645830-33645902)
chr2 (186-234)||(42057161-42057209)
[»] chr7 (41 HSPs)
chr7 (232-370)||(47543460-47543598)
chr7 (158-226)||(8036369-8036437)
chr7 (154-234)||(15566576-15566656)
chr7 (156-234)||(5800443-5800521)
chr7 (158-231)||(1787153-1787226)
chr7 (254-325)||(10315127-10315198)
chr7 (154-205)||(19492097-19492148)
chr7 (256-300)||(9628257-9628301)
chr7 (232-287)||(4609652-4609707)
chr7 (254-325)||(31030341-31030412)
chr7 (147-205)||(3996589-3996647)
chr7 (156-234)||(35367470-35367547)
chr7 (156-234)||(48621961-48622039)
chr7 (156-205)||(34729408-34729457)
chr7 (163-231)||(15646937-15647005)
chr7 (232-300)||(17116400-17116468)
chr7 (154-233)||(10040600-10040679)
chr7 (159-234)||(19371922-19371997)
chr7 (232-315)||(26569741-26569824)
chr7 (156-234)||(27513150-27513228)
chr7 (156-230)||(36609636-36609710)
chr7 (168-234)||(40356203-40356269)
chr7 (158-231)||(7809905-7809978)
chr7 (148-205)||(38174889-38174946)
chr7 (181-233)||(4550508-4550560)
chr7 (186-234)||(21766029-21766077)
chr7 (174-230)||(39435170-39435226)
chr7 (158-229)||(581572-581643)
chr7 (155-202)||(7774799-7774846)
chr7 (157-228)||(16682977-16683048)
chr7 (157-228)||(17657213-17657284)
chr7 (156-226)||(21080021-21080091)
chr7 (156-206)||(31177038-31177088)
chr7 (258-316)||(34237214-34237272)
chr7 (156-234)||(42963099-42963176)
chr7 (165-230)||(20055834-20055899)
chr7 (154-199)||(27240805-27240850)
chr7 (156-193)||(40658822-40658859)
chr7 (190-234)||(12170723-12170767)
chr7 (198-234)||(15470294-15470330)
chr7 (186-234)||(46759432-46759480)
[»] chr6 (27 HSPs)
chr6 (233-370)||(32196744-32196881)
chr6 (232-329)||(7824105-7824202)
chr6 (232-315)||(11324501-11324584)
chr6 (233-316)||(5667346-5667429)
chr6 (256-316)||(18673422-18673482)
chr6 (155-231)||(19145961-19146037)
chr6 (253-316)||(16853062-16853125)
chr6 (155-230)||(24062809-24062884)
chr6 (163-207)||(17943770-17943814)
chr6 (253-316)||(9907213-9907276)
chr6 (253-300)||(34714970-34715017)
chr6 (156-230)||(12169672-12169746)
chr6 (232-294)||(32533067-32533129)
chr6 (170-231)||(22793080-22793141)
chr6 (156-229)||(32349183-32349256)
chr6 (248-296)||(17292767-17292815)
chr6 (162-233)||(21236861-21236932)
chr6 (155-226)||(26854168-26854239)
chr6 (156-231)||(33573663-33573738)
chr6 (253-303)||(22469477-22469527)
chr6 (253-295)||(29599170-29599212)
chr6 (232-335)||(9200880-9200976)
chr6 (232-297)||(11298592-11298657)
chr6 (156-212)||(7451525-7451581)
chr6 (183-231)||(20469691-20469739)
chr6 (158-234)||(28592858-28592934)
chr6 (186-234)||(32531312-32531360)
[»] chr1 (43 HSPs)
chr1 (232-370)||(32160103-32160240)
chr1 (232-334)||(15259434-15259536)
chr1 (232-316)||(26260785-26260869)
chr1 (232-327)||(27363725-27363820)
chr1 (232-295)||(27568417-27568480)
chr1 (155-234)||(37705631-37705710)
chr1 (156-234)||(11842773-11842850)
chr1 (156-234)||(33194088-33194166)
chr1 (156-230)||(47402437-47402511)
chr1 (232-309)||(44675129-44675206)
chr1 (256-312)||(17128543-17128599)
chr1 (257-321)||(36098596-36098660)
chr1 (156-231)||(45478830-45478905)
chr1 (232-290)||(9484879-9484937)
chr1 (156-226)||(38619431-38619501)
chr1 (244-297)||(48973697-48973750)
chr1 (251-300)||(52626559-52626608)
chr1 (156-226)||(1580999-1581069)
chr1 (232-327)||(27264610-27264711)
chr1 (159-233)||(34011016-34011090)
chr1 (232-302)||(38133034-38133104)
chr1 (250-300)||(40708441-40708491)
chr1 (232-297)||(28442145-28442210)
chr1 (181-234)||(46880213-46880266)
chr1 (176-232)||(4242263-4242319)
chr1 (162-226)||(21336328-21336392)
chr1 (157-233)||(44921719-44921795)
chr1 (155-234)||(10729221-10729300)
chr1 (258-316)||(2653704-2653762)
chr1 (180-234)||(11409177-11409231)
chr1 (172-214)||(16389102-16389144)
chr1 (155-205)||(44648458-44648508)
chr1 (156-205)||(650120-650169)
chr1 (232-297)||(5411773-5411838)
chr1 (186-231)||(5880745-5880790)
chr1 (170-231)||(5965559-5965620)
chr1 (158-203)||(9398187-9398232)
chr1 (156-205)||(31528844-31528893)
chr1 (160-233)||(48420168-48420241)
chr1 (278-318)||(7643082-7643122)
chr1 (156-228)||(8209235-8209307)
chr1 (256-312)||(8527077-8527133)
chr1 (232-300)||(25392319-25392387)
[»] chr3 (55 HSPs)
chr3 (232-370)||(4741033-4741168)
chr3 (232-334)||(13043383-13043485)
chr3 (232-334)||(13051460-13051562)
chr3 (156-234)||(22177561-22177639)
chr3 (156-231)||(54768140-54768215)
chr3 (232-301)||(14788901-14788970)
chr3 (155-231)||(38176949-38177025)
chr3 (232-316)||(47161022-47161106)
chr3 (156-234)||(22102612-22102690)
chr3 (232-309)||(20017410-20017487)
chr3 (233-309)||(6894228-6894304)
chr3 (163-234)||(38277553-38277624)
chr3 (155-234)||(49758212-49758291)
chr3 (235-297)||(12947907-12947969)
chr3 (244-297)||(6925997-6926050)
chr3 (256-312)||(21408114-21408170)
chr3 (156-231)||(18388580-18388655)
chr3 (155-234)||(18461102-18461181)
chr3 (232-311)||(25845682-25845761)
chr3 (156-234)||(5811917-5811995)
chr3 (147-205)||(18386707-18386765)
chr3 (156-205)||(14266015-14266064)
chr3 (244-297)||(53876881-53876934)
chr3 (178-234)||(7639654-7639710)
chr3 (155-226)||(7777766-7777838)
chr3 (157-229)||(21091777-21091849)
chr3 (154-234)||(22258404-22258484)
chr3 (236-284)||(33388586-33388634)
chr3 (154-226)||(45701717-45701789)
chr3 (159-234)||(46931713-46931786)
chr3 (159-202)||(12565299-12565342)
chr3 (175-230)||(13043131-13043186)
chr3 (175-230)||(13051208-13051263)
chr3 (159-202)||(13259698-13259741)
chr3 (155-233)||(265159-265237)
chr3 (160-234)||(2454363-2454437)
chr3 (156-234)||(5907116-5907194)
chr3 (156-214)||(35379579-35379637)
chr3 (91-129)||(53546576-53546614)
chr3 (149-214)||(5530826-5530891)
chr3 (244-300)||(8074647-8074706)
chr3 (156-234)||(17438550-17438630)
chr3 (185-234)||(19225119-19225168)
chr3 (173-230)||(19245528-19245585)
chr3 (155-212)||(21078857-21078914)
chr3 (232-297)||(22534037-22534102)
chr3 (232-297)||(29542387-29542452)
chr3 (156-213)||(31766460-31766517)
chr3 (232-297)||(41878726-41878791)
chr3 (176-233)||(45648334-45648391)
chr3 (159-207)||(13149844-13149892)
chr3 (159-230)||(22152459-22152531)
chr3 (256-316)||(23050173-23050233)
chr3 (177-233)||(25842533-25842589)
chr3 (161-201)||(49430407-49430447)
[»] chr4 (36 HSPs)
chr4 (156-234)||(21122420-21122498)
chr4 (155-231)||(35519269-35519345)
chr4 (156-231)||(5190629-5190704)
chr4 (232-315)||(52578018-52578101)
chr4 (244-316)||(19846574-19846646)
chr4 (253-312)||(37772967-37773026)
chr4 (156-233)||(7438047-7438124)
chr4 (256-300)||(13608945-13608989)
chr4 (148-231)||(1363924-1364007)
chr4 (162-233)||(20702719-20702790)
chr4 (146-205)||(23775336-23775395)
chr4 (170-235)||(17702658-17702723)
chr4 (156-205)||(44277093-44277142)
chr4 (174-234)||(2548616-2548676)
chr4 (256-312)||(8814058-8814114)
chr4 (231-294)||(9831417-9831480)
chr4 (156-234)||(23091109-23091187)
chr4 (232-297)||(11131187-11131252)
chr4 (231-316)||(13137113-13137198)
chr4 (263-312)||(22495352-22495401)
chr4 (244-297)||(54870818-54870871)
chr4 (186-234)||(161001-161049)
chr4 (154-234)||(5499199-5499279)
chr4 (158-234)||(20817993-20818069)
chr4 (158-205)||(9778982-9779029)
chr4 (155-226)||(17702364-17702435)
chr4 (232-291)||(27270012-27270071)
chr4 (155-234)||(54855891-54855970)
chr4 (155-205)||(9170922-9170972)
chr4 (258-316)||(45637490-45637548)
chr4 (232-321)||(30972364-30972453)
chr4 (172-233)||(49320300-49320361)
chr4 (186-234)||(5720238-5720286)
chr4 (256-300)||(12115053-12115097)
chr4 (232-300)||(22653321-22653389)
chr4 (156-228)||(39670361-39670433)
[»] chr8 (32 HSPs)
chr8 (232-300)||(8462510-8462578)
chr8 (154-234)||(13469358-13469438)
chr8 (163-205)||(27022608-27022650)
chr8 (174-234)||(13150141-13150201)
chr8 (156-232)||(15898963-15899039)
chr8 (256-316)||(38738483-38738543)
chr8 (155-234)||(35451037-35451116)
chr8 (156-234)||(1759441-1759519)
chr8 (156-234)||(15044083-15044160)
chr8 (156-233)||(5918833-5918910)
chr8 (156-201)||(11929402-11929447)
chr8 (146-214)||(11352972-11353040)
chr8 (159-234)||(18994542-18994617)
chr8 (232-294)||(33191206-33191268)
chr8 (156-234)||(41666543-41666621)
chr8 (164-230)||(12838771-12838837)
chr8 (156-234)||(23085624-23085702)
chr8 (160-230)||(27837753-27837823)
chr8 (156-214)||(33192331-33192389)
chr8 (156-234)||(34180246-34180324)
chr8 (158-228)||(38804458-38804528)
chr8 (155-233)||(45440852-45440930)
chr8 (232-329)||(5752015-5752112)
chr8 (189-234)||(7020146-7020191)
chr8 (172-205)||(8889755-8889788)
chr8 (156-205)||(9503206-9503255)
chr8 (177-230)||(11916121-11916174)
chr8 (156-201)||(11941804-11941849)
chr8 (231-300)||(33282848-33282917)
chr8 (176-209)||(43922447-43922480)
chr8 (187-231)||(15916926-15916970)
chr8 (178-234)||(41941081-41941137)
[»] scaffold0014 (2 HSPs)
scaffold0014 (143-226)||(21074-21157)
scaffold0014 (156-205)||(21649-21698)
[»] scaffold0293 (1 HSPs)
scaffold0293 (156-229)||(4682-4755)
[»] scaffold0003 (2 HSPs)
scaffold0003 (156-205)||(227484-227533)
scaffold0003 (156-231)||(226142-226217)
[»] scaffold0268 (1 HSPs)
scaffold0268 (155-230)||(21407-21482)
[»] scaffold0068 (1 HSPs)
scaffold0068 (156-231)||(57415-57490)
[»] scaffold0005 (1 HSPs)
scaffold0005 (163-234)||(254695-254766)
[»] scaffold0707 (1 HSPs)
scaffold0707 (156-231)||(169-244)
[»] scaffold0649 (1 HSPs)
scaffold0649 (180-231)||(8251-8302)
[»] scaffold0196 (1 HSPs)
scaffold0196 (155-234)||(8503-8582)
[»] scaffold0795 (1 HSPs)
scaffold0795 (231-300)||(2191-2260)
[»] scaffold0047 (1 HSPs)
scaffold0047 (253-309)||(64275-64331)
[»] scaffold0002 (1 HSPs)
scaffold0002 (159-207)||(155110-155158)


Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 42)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 16610387 - 16610740
Alignment:
Q  18 aatttgggtacagaaagaatgagctcaagcatttcccataattgttctgcatatgtttcgtaagcattcatctcatctcattcattcacactaaacattg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16610387 aatttgggtacagaaagaatgagctcaagcatttcccataattgttctgcatatgtttcgtaagcattcatctcatctcattcattcacactaaacattg 16610486  T
Q  118 atctgcatttaatttatctggtagcttccattatacaaactagcgaaaa-aacgggcactcacgtgtctgtctttccgctctttttattacgttaacgca 216  Q
     |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16610487 ttctgcatttaatttatctggtagcttccattatagaaactagcgaaaaaaacgggcactcacgtgtccgtctttccgctctttttattacgttaacgca 16610586  T
Q  217 tgaaaattatgaacggtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaa 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16610587 tgaaaattatgaacggtggttgaagacgaagtttgtttctcttcccttcaattatcatgggtggtggcttagtccgtttaccattttaggcattggctaa 16610686  T
Q  317 gagtttcttttctgttttttgtttatgatctgttaggcaacttttgtatatatt 370  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16610687 tagtttcttttctgttttttgtttatgatctgttaggcaacttttgtatatatt 16610740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 232 - 335
Target Start/End: Complemental strand, 31706490 - 31706387
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttctgt 331  Q
    |||||| ||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||    
T  31706490 gtggttaaaggcgaagtatatttctcttcccctcaattaccatgggtggtggcttagtccgtttaccatattgggcataggctaagagtttcttttctgt 31706391  T
Q  332 tttt 335  Q
    ||||    
T  31706390 tttt 31706387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 233 - 322
Target Start/End: Complemental strand, 704579 - 704490
Alignment:
Q  233 tggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagttt 322  Q
    ||||||||| | ||||||| || |||||| |||||||| ||||||||||| |||||||||||||||||  | |||||||||||| |||||    
T  704579 tggttgaaggcaaagtttgcttttcttccattcaattatcatgggtggtgacttagtccgtttaccatactgggcattggctaaaagttt 704490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 252 - 329
Target Start/End: Complemental strand, 29651844 - 29651767
Alignment:
Q  252 tttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttct 329  Q
    ||||||||| | ||||||| ||||||||||||||||||||||||||||| || ||||| |||||||  ||||||||||    
T  29651844 tttctcttctcctcaattatcatgggtggtggcttagtccgtttaccatgttgggcataggctaaggttttcttttct 29651767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 232 - 315
Target Start/End: Original strand, 29994652 - 29994735
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggcta 315  Q
    ||||||||||  |||||||  || ||||||||||||||| ||||| |||||||||| |||||||||  ||||||||||||||||    
T  29994652 gtggttgaaggtgaagtttccttttcttcccttcaattatcatggttggtggcttaatccgtttactgttttaggcattggcta 29994735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 31659660 - 31659582
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||||| ||||||||||||||||  ||||||||| |||||||||| || |||||  |||||| |||||||||||    
T  31659660 actagcgaaaagacgggcactcacgtgttcgtctttccgttctttttattgcgctaacgtttgaaaaatatgaacggtg 31659582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 257 - 322
Target Start/End: Complemental strand, 27482711 - 27482646
Alignment:
Q  257 cttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagttt 322  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||| || ||||| ||||||||||||    
T  27482711 cttcccttcaattatcatggctggtggcttagtccgttcaccatgttgggcataggctaagagttt 27482646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 19929717 - 19929638
Alignment:
Q  156 actagcgaaaaaacgggc-actcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||||||||||||||  ||||||||| | |||||||||||| |||||||  |||||||  ||||||||||||||||||    
T  19929717 actagcgaaaaaacgggttactcacgtgcccgtctttccgctcattttattgtgttaacgtttgaaaattatgaacggtg 19929638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 833991 - 834070
Alignment:
Q  148 ttatacaaactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaa 229  Q
    ||||||| ||||||||||| ||||||||    ||| |||||||||||||||||||||| ||||||||  |||||||||||||    
T  833991 ttatacatactagcgaaaagacgggcacga--gtgcctgtctttccgctctttttattgcgttaacgtttgaaaattatgaa 834070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 230
Target Start/End: Complemental strand, 9524165 - 9524091
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaac 230  Q
    ||||||||||| ||||||||   |||| |||||||||||||||||||||| || |||||  ||||||||||||||    
T  9524165 actagcgaaaagacgggcacgtgcgtgcctgtctttccgctctttttattgcgctaacgtttgaaaattatgaac 9524091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 14000741 - 14000663
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||||||||  ||| | ||||||||   |||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  14000741 actagcgaaaaggcggactctcacgtgctcgtctttccgctctttttattgcgttaacgtttgaaaattatgaacggtg 14000663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 19930535 - 19930465
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattat 226  Q
    |||||| |||| |||| ||||||||||||  |||||||||||||||||||| |||||||  ||||||||||    
T  19930535 actagcaaaaagacggacactcacgtgtccatctttccgctctttttattatgttaacgtttgaaaattat 19930465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 36701024 - 36700974
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    |||||||||||| |||| ||||||||||||||||||||||| |||||||||    
T  36701024 aactagcgaaaagacggacactcacgtgtctgtctttccgccctttttatt 36700974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 39956063 - 39956005
Alignment:
Q  176 tcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||||||||||||||||||||||||||| || ||||   ||||||||||||||||||    
T  39956063 tcacgtgtctgtctttccgctctttttattgcgctaacatttgaaaattatgaacggtg 39956005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 21041995 - 21042048
Alignment:
Q  244 gaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttac 297  Q
    |||||||||  |||||||||| ||||| ||||||||||||||||||||||||||    
T  21041995 gaagtttgtaactcttccctttaattatcatgggtggtggcttagtccgtttac 21042048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 11131728 - 11131780
Alignment:
Q  162 gaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacg 214  Q
    ||||| |||| ||||||||||  ||||||||||||||||||||||||||||||    
T  11131728 gaaaagacggacactcacgtgcttgtctttccgctctttttattacgttaacg 11131780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 26778784 - 26778716
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccat 300  Q
    ||||||||||  ||| ||| |||||||| |||||||||| ||||| |||||| ||||||||||||||||    
T  26778784 gtggttgaaggtgaaatttttttctctttccttcaattatcatggttggtggtttagtccgtttaccat 26778716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 28766560 - 28766484
Alignment:
Q  158 tagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||| | ||||||||| ||| | |||||||||||||||||||| | |||||   ||||||||||||||||||    
T  28766560 tagcgaaaagatgggcactcatgtgcccgtctttccgctctttttattgcattaacttttgaaaattatgaacggtg 28766484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 33168522 - 33168470
Alignment:
Q  182 gtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||||||||| ||||||||||| ||||||||  ||||||||||||||||||    
T  33168522 gtctgtctttccactctttttattgcgttaacgtttgaaaattatgaacggtg 33168470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 41613319 - 41613236
Alignment:
Q  148 ttatacaaactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||| |||||||||||||   ||||||||||||| | ||||||||||||||||||| || | ||||  |||||||||||| |||||    
T  41613319 ttatataaactagcgaaaa---gggcactcacgtgcccgtctttccgctctttttatcacatcaacgtttgaaaattatgatcggtg 41613236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 936403 - 936320
Alignment:
Q  150 atacaaactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggt 233  Q
    ||||| ||||||||||| | ||  | ||||||| | |||||||||||||||||||| || |||||  |||||||||||||||||    
T  936403 atacatactagcgaaaatatggctattcacgtgcccgtctttccgctctttttattgcgctaacgtttgaaaattatgaacggt 936320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 6062253 - 6062191
Alignment:
Q  172 gcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||| ||||| ||||||||||||| ||||||||||| |||||  | ||||||||||||||||    
T  6062253 gcacttacgtgcctgtctttccgctttttttattacgctaacgtttaaaaattatgaacggtg 6062191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 7463915 - 7463993
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||||| | ||||||||||||| ||||||||||||  ||||||||| | ||||   |||||||||| |||||||    
T  7463915 actagcgaaaagaggggcactcacgtgcctgtctttccgcattttttattatgctaacatttgaaaattattaacggtg 7463993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 201
Target Start/End: Original strand, 19128355 - 19128397
Alignment:
Q  159 agcgaaaaaacgggcactcacgtgtctgtctttccgctctttt 201  Q
    |||||||| |||||||||||||||| |||||||||||||||||    
T  19128355 agcgaaaagacgggcactcacgtgtttgtctttccgctctttt 19128397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 32252176 - 32252222
Alignment:
Q  255 ctcttcccttcaattaccatgggtggtggcttagtccgtttaccatt 301  Q
    ||||||| |||||||| ||||| ||||||||||||||||||||||||    
T  32252176 ctcttcctttcaattatcatggttggtggcttagtccgtttaccatt 32252222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 3295878 - 3295830
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    ||||||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  3295878 actagcgaaaagacgggtactcacgtgtc-gtctttccgctctttttatt 3295830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 24837018 - 24836945
Alignment:
Q  161 cgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||| |||||||||||||||   |||||||||||||||||||| || ||||   | ||||||||||||||||    
T  24837018 cgaaaagacgggcactcacgtgcacgtctttccgctctttttattgcgctaacttttaaaaattatgaacggtg 24836945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 33629630 - 33629557
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaa 229  Q
    |||||| |||| | ||||||||| ||||| |||||||| ||||||||||| |||||| |  |||||||||||||    
T  33629630 actagcaaaaagaagggcactcaagtgtccgtctttccactctttttattgcgttaatgtttgaaaattatgaa 33629557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 23270908 - 23270848
Alignment:
Q  174 actcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||| | |||||||||||||||||||| |||||| |  |||||||||| |||||||    
T  23270908 actcacgtgcccgtctttccgctctttttattgcgttaaagtttgaaaattataaacggtg 23270848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 25942656 - 25942600
Alignment:
Q  256 tcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattgg 312  Q
    |||||| ||||||||  |||| ||||||||||||||||| |||||| ||||||||||    
T  25942656 tcttccgttcaattattatggttggtggcttagtccgttcaccattctaggcattgg 25942600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 39839938 - 39840006
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccat 300  Q
    |||||||||||||||||||   ||||||||||| || || ||||| |||||||||||||| || |||||    
T  39839938 gtggttgaagacgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccat 39840006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 8990624 - 8990577
Alignment:
Q  158 tagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    ||||||||| ||| ||||||||||||| ||||||| ||||||||||||    
T  8990624 tagcgaaaagacgagcactcacgtgtccgtctttctgctctttttatt 8990577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 314
Target Start/End: Original strand, 25326156 - 25326239
Alignment:
Q  231 ggtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggct 314  Q
    |||||||||||   || |||||| ||||| |||||||||||||| | |||||||||||| |||| ||||| || ||||| ||||    
T  25326156 ggtggttgaaggtaaaatttgttactcttgccttcaattaccatcgttggtggcttagttcgttcaccatgtttggcatcggct 25326239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 43370453 - 43370402
Alignment:
Q  154 aaactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    |||||||| |||| |||||||||||| |||| ||||||| ||||||||||||    
T  43370453 aaactagcaaaaagacgggcactcacctgtccgtctttctgctctttttatt 43370402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 8942628 - 8942662
Alignment:
Q  178 acgtgtctgtctttccgctctttttattacgttaa 212  Q
    ||||||| |||||||||||||||||||||||||||    
T  8942628 acgtgtccgtctttccgctctttttattacgttaa 8942662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 321
Target Start/End: Complemental strand, 19315068 - 19314979
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagtt 321  Q
    |||||||||| |||| |||| ||   ||||||  ||||| ||||| ||||||||||| |||||||||||  ||||||| |||||| ||||    
T  19315068 gtggttgaaggcgaaatttgctttatttccctggaattatcatggttggtggcttagcccgtttaccatgctaggcataggctaatagtt 19314979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 300
Target Start/End: Original strand, 27843500 - 27843569
Alignment:
Q  231 ggtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccat 300  Q
    |||||||||||  |||  |||||||||||| ||||||||| ||||| ||||  |||||||| ||||||||    
T  27843500 ggtggttgaaggtgaaacttgtttctcttctcttcaattatcatggctggtaacttagtccatttaccat 27843569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 32870188 - 32870139
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    ||||||||||| |||  || ||| ||||||||||||||||||||||||||    
T  32870188 actagcgaaaagacgaacattcatgtgtctgtctttccgctctttttatt 32870139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 38445361 - 38445418
Alignment:
Q  148 ttatacaaactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    ||||| ||||||||||||| | ||||||||||||| |  | |||||||||||||||||    
T  38445361 ttatataaactagcgaaaagaagggcactcacgtgcccatttttccgctctttttatt 38445418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 312
Target Start/End: Complemental strand, 804463 - 804383
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattgg 312  Q
    ||||||||||  ||| | |||| |||| ||||  || |||||||| |||||||| |||||||||||||| ||||| |||||    
T  804463 gtggttgaaggagaaatgtgttactctcccctctaactaccatggctggtggctaagtccgtttaccatcttaggaattgg 804383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 9051312 - 9051268
Alignment:
Q  148 ttatacaaactagcgaaaaa-acgggcactcacgtgtctgtcttt 191  Q
    |||| ||||||||||||||| |||| |||||||||||||||||||    
T  9051312 ttattcaaactagcgaaaaagacggacactcacgtgtctgtcttt 9051268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 16518428 - 16518372
Alignment:
Q  256 tcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattgg 312  Q
    ||||||| ||||||||||||| | ||||||||||||||| |||| | ||| ||||||    
T  16518428 tcttcccctcaattaccatggttagtggcttagtccgttcaccactctagacattgg 16518372  T

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Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 236 - 370
Target Start/End: Original strand, 8090506 - 8090640
Alignment:
Q  236 ttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttctgttttt 335  Q
    ||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8090506 ttgaagacggagtttatttctcttcccttcaattatcatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttctgttttt 8090605  T
Q  336 tgtttatgatctgttaggcaacttttgtatatatt 370  Q
    |||||||||||||||||||||||||||||||||||    
T  8090606 tgtttatgatctgttaggcaacttttgtatatatt 8090640  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 244 - 334
Target Start/End: Complemental strand, 40638856 - 40638766
Alignment:
Q  244 gaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttctgtttt 334  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| |||||| |||||||||| ||||||    
T  40638856 gaagtatgcttctcttcccttcaattaccatgggtggtggcttagtccgtttacgattttggacataggctaaaagtttcttttatgtttt 40638766  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 315
Target Start/End: Original strand, 31640273 - 31640356
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggcta 315  Q
    |||||||||| |||| |||| |||||||||| ||||||||||||| |||||||||||||||||||| ||| ||||||| |||||    
T  31640273 gtggttgaaggcgaaatttgcttctcttcccctcaattaccatggatggtggcttagtccgtttacaattataggcataggcta 31640356  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 334
Target Start/End: Original strand, 20948142 - 20948244
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttctgt 331  Q
    |||||||||| |||||| |  |||||||| | ||||||||||||||||||||||||||||||||||||| || ||  | |||||||  |||||||||| |    
T  20948142 gtggttgaaggcgaagtattcttctcttcgcctcaattaccatgggtggtggcttagtccgtttaccatgttgggtgtaggctaaggttttcttttcttt 20948241  T
Q  332 ttt 334  Q
    |||    
T  20948242 ttt 20948244  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 9420795 - 9420722
Alignment:
Q  254 tctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttctttt 327  Q
    ||||||||| ||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||  ||||||||    
T  9420795 tctcttcccctcaattatcatgggtggtggcttagcccgtttactattttaggcataggctaaggttttctttt 9420722  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 231 - 300
Target Start/End: Original strand, 27009231 - 27009300
Alignment:
Q  231 ggtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccat 300  Q
    |||| |||||| |||| |||  |||||||||||||||||||||||| |||||||||||||||||||||||    
T  27009231 ggtgattgaaggcgaaatttacttctcttcccttcaattaccatggttggtggcttagtccgtttaccat 27009300  T

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Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 233
Target Start/End: Complemental strand, 34753476 - 34753399
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggt 233  Q
    ||||||||||| ||||||||||||||| | ||||||| ||||||||||||||| ||| |  |||||||||||||||||    
T  34753476 actagcgaaaagacgggcactcacgtgcccgtctttctgctctttttattacgctaatgtttgaaaattatgaacggt 34753399  T

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Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 316
Target Start/End: Complemental strand, 45131191 - 45131107
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaa 316  Q
    ||||||||||  ||| | || |||||||||||||||||| |||||||||||||||||||| ||||||||  | ||||||||||||    
T  45131191 gtggttgaaggggaaatatgcttctcttcccttcaattatcatgggtggtggcttagtccatttaccatgctgggcattggctaa 45131107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 11653232 - 11653153
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||| |||||| | ||||||||||||||||||||||| ||| |||||||| ||||||||  ||||||||||||| ||||    
T  11653232 aactaacgaaaagatgggcactcacgtgtctgtctttctgctttttttattgcgttaacgtttgaaaattatgaaaggtg 11653153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 24004381 - 24004430
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  24004381 actagcgaaaaaatgggcactcacgtgcctgtctttccgctctttttatt 24004430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 9170022 - 9169947
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacg 231  Q
    ||||||||||| ||||||| ||||||| |||||||||| ||||||||||| || |||||  | |||||||||||||    
T  9170022 actagcgaaaagacgggcaatcacgtgactgtctttccactctttttattgcgctaacgtttaaaaattatgaacg 9169947  T

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Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 25915017 - 25915095
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||||| |||||||||||||||  |||||||| |||||| ||||| || |||||  |||||||||| |||||||    
T  25915017 actagcgaaaagacgggcactcacgtgcttgtctttctgctcttattattgcgctaacgtttgaaaattataaacggtg 25915095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 36802660 - 36802602
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacg 214  Q
    ||||||||||| ||| |||||| |||||| ||||||||||||||||||||||| |||||    
T  36802660 actagcgaaaagacgagcactcgcgtgtccgtctttccgctctttttattacgctaacg 36802602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 13450425 - 13450352
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaa 229  Q
    ||||||||||| ||||| ||||||||| | |||||||||||||||||||| || ||| |  |||||||||||||    
T  13450425 actagcgaaaagacgggtactcacgtgcccgtctttccgctctttttattgcgctaatgtttgaaaattatgaa 13450352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 15265845 - 15265766
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||| |||||| ||| |||  |||||| | ||||||||||||||||||||||| |||||  |||||||||||| |||||    
T  15265845 aactatcgaaaagacgagcatccacgtgcccgtctttccgctctttttattacgctaacgtttgaaaattatgagcggtg 15265766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 35916979 - 35916904
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacg 231  Q
    ||||||||||| ||||| |||||| |||   ||||||||||||||||||| ||||||||  ||||||||| |||||    
T  35916979 actagcgaaaagacgggtactcacatgttcatctttccgctctttttattgcgttaacgtttgaaaattaggaacg 35916904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 9191964 - 9192042
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||||| |||| |||||||||| | ||||||  |||| ||||||| || |||||  ||||||||||||||||||    
T  9191964 actagcgaaaagacggccactcacgtgcccgtcttttggctcattttattgcgctaacgtttgaaaattatgaacggtg 9192042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 33133801 - 33133851
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    |||||||||||| ||| ||||||||||| | ||||||||||||||||||||    
T  33133801 aactagcgaaaagacgagcactcacgtgcccgtctttccgctctttttatt 33133851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 41014550 - 41014472
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||||| | || || ||||||| |  ||||||||||||||||||| || |||||  ||||||||||||||||||    
T  41014550 actagcgaaaagatggacattcacgtggccatctttccgctctttttattgcgctaacgtttgaaaattatgaacggtg 41014472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 15508840 - 15508791
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    ||||||||||||||||| |||||||||   ||||||||||||||||||||    
T  15508840 actagcgaaaaaacgggtactcacgtgctcgtctttccgctctttttatt 15508791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 21564248 - 21564313
Alignment:
Q  165 aaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaac 230  Q
    |||||||||||||||||||| | |||||| ||||||||||| || ||| |  ||||||||||||||    
T  21564248 aaaacgggcactcacgtgtccggctttccactctttttattgcgctaatgtttgaaaattatgaac 21564313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 21885130 - 21885203
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaa 229  Q
    ||||||||||| | ||||||||||||| | ||||||| |||||||||||| |  |||||  |||||||||||||    
T  21885130 actagcgaaaagatgggcactcacgtgcccgtctttctgctctttttattgctctaacgtttgaaaattatgaa 21885203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 30505774 - 30505838
Alignment:
Q  257 cttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagtt 321  Q
    |||||||||||||| ||||| |||||| |||||| ||||||||| || ||||| |||||| ||||    
T  30505774 cttcccttcaattatcatggttggtggtttagtctgtttaccatgttgggcataggctaatagtt 30505838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 41633437 - 41633373
Alignment:
Q  170 gggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||||||||||   |||||||||| ||||||||| || |||||  ||||||||||||||||||    
T  41633437 gggcactcacgtgctcgtctttccgcactttttattgcgctaacgtttgaaaattatgaacggtg 41633373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 20111286 - 20111235
Alignment:
Q  154 aaactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    ||||||||||||| || | ||||||||| || ||||||||||||||||||||    
T  20111286 aaactagcgaaaagacagacactcacgtatccgtctttccgctctttttatt 20111235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 316
Target Start/End: Original strand, 38409046 - 38409105
Alignment:
Q  257 cttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaa 316  Q
    |||||||||||||| ||||| |||||| | ||||||||||||||| |||| || ||||||    
T  38409046 cttcccttcaattatcatggttggtggttcagtccgtttaccattctaggtataggctaa 38409105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 33134330 - 33134404
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaa 229  Q
    |||||||||||| ||||  |||||| |||| |||||||| ||||||||||| || ||| |  |||||||||||||    
T  33134330 aactagcgaaaagacggatactcacatgtccgtctttccactctttttattgcgctaatgtttgaaaattatgaa 33134404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 37738127 - 37738061
Alignment:
Q  255 ctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagtt 321  Q
    |||||||||| || |  ||||| ||||||||||||||||| |||||||| ||||| |||||| ||||    
T  37738127 ctcttccctttaactttcatggctggtggcttagtccgttcaccattttgggcataggctaatagtt 37738061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 38147896 - 38147818
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||| |||| ||||  ||||| ||||| |||||||||||| ||||||| |||||||   |||||||||| |||||||    
T  38147896 actagcaaaaagacggatactcatgtgtccgtctttccgctccttttattgcgttaacatttgaaaattattaacggtg 38147818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 4160395 - 4160322
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatga 228  Q
    |||||||||||| ||| ||| ||| ||  |||||||||||||||||||||| ||||| ||  ||||||| ||||    
T  4160395 aactagcgaaaagacgagcattcatgtacctgtctttccgctctttttattgcgttatcgtttgaaaataatga 4160322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 12617061 - 12617114
Alignment:
Q  176 tcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaa 229  Q
    |||||||||||||||||  || |||||||||||||||||  |||||||| ||||    
T  12617061 tcacgtgtctgtctttctactatttttattacgttaacgtttgaaaattttgaa 12617114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 41384300 - 41384376
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggt 233  Q
    |||| |||||| ||||| ||||||| | |  |||||||||| |||||||| ||||||||  |||||||||||||||||    
T  41384300 actatcgaaaagacgggaactcacgcgcccttctttccgct-tttttattgcgttaacgtttgaaaattatgaacggt 41384376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 9933119 - 9933071
Alignment:
Q  269 taccatgggtggtggcttagtccgtttaccattttaggcattggctaag 317  Q
    ||||| || |||||||||| |||||| |||||| |||||||||||||||    
T  9933119 taccacggttggtggcttaatccgttcaccattataggcattggctaag 9933071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 33645902 - 33645830
Alignment:
Q  231 ggtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccatttt 303  Q
    |||||||||||   || |||| | ||||||| |||||||||||||| |||||| |||||| ||| ||||||||    
T  33645902 ggtggttgaaggaaaaatttgctactcttcctttcaattaccatggttggtgggttagtctgttcaccatttt 33645830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 42057161 - 42057209
Alignment:
Q  186 gtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||| ||||||||||||| || |||||  ||||||||||||||||||    
T  42057161 gtcttttcgctctttttattgcgctaacgtttgaaaattatgaacggtg 42057209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 232 - 370
Target Start/End: Original strand, 47543460 - 47543598
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttctgt 331  Q
    |||||||||||||||||||  |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  47543460 gtggttgaagacgaagtttagttctcttcccttcaattatcatgggtgatggcttagtccgtttaccattttaggcattggctaagagtttcttttctgc 47543559  T
Q  332 tttttgtttatgatctgttaggcaacttttgtatatatt 370  Q
    |||||||||||||||||||||||||||||||||||||||    
T  47543560 tttttgtttatgatctgttaggcaacttttgtatatatt 47543598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 8036369 - 8036437
Alignment:
Q  158 tagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattat 226  Q
    ||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||  ||||||||||    
T  8036369 tagcgaaaagacgtgcactcacgtgtctgtctttctgctctttttattacgttaacgtttgaaaattat 8036437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 15566576 - 15566656
Alignment:
Q  154 aaactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||||||||||  |||||||||||||| |||||||||||||| |||||||| ||||| |  ||||||||||||||||||    
T  15566576 aaactagcgaaaagtcgggcactcacgtgcctgtctttccgctcattttattatgttaaagtttgaaaattatgaacggtg 15566656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 5800521 - 5800443
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||||| |||| |||||||||||| |||||||||||||||||||| || ||| |  ||||||||||||||||||    
T  5800521 actagcgaaaagacggacactcacgtgtccgtctttccgctctttttattgcgctaatgtttgaaaattatgaacggtg 5800443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 1787226 - 1787153
Alignment:
Q  158 tagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacg 231  Q
    ||||||||| |||| |||||||||||| |||||||||||||||| ||| ||||||||  |||||||||||||||    
T  1787226 tagcgaaaagacggacactcacgtgtccgtctttccgctcttttaattgcgttaacgtttgaaaattatgaacg 1787153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 10315127 - 10315198
Alignment:
Q  254 tctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttctt 325  Q
    ||||||||| |||||||||| |||||||||||||| |||||||| ||||| ||||| ||||||| |||||||    
T  10315127 tctcttcccctcaattaccacgggtggtggcttagcccgtttactattttgggcataggctaagtgtttctt 10315198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 19492148 - 19492097
Alignment:
Q  154 aaactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  19492148 aaactagcgaaaagacgggcactcacatgtctgtctttccgctctttttatt 19492097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 9628257 - 9628301
Alignment:
Q  256 tcttcccttcaattaccatgggtggtggcttagtccgtttaccat 300  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  9628257 tcttcccttcaattaccatggttggtggcttagtccgtttaccat 9628301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 4609707 - 4609652
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggctta 287  Q
    |||||||||| |||||| | ||||||||||| ||||||||||||||||||||||||    
T  4609707 gtggttgaaggcgaagtatatttctcttcccctcaattaccatgggtggtggctta 4609652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 31030412 - 31030341
Alignment:
Q  254 tctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttctt 325  Q
    ||||||||| |||||||||| |||||||||||||  |||||||| ||||| ||||| ||||||| |||||||    
T  31030412 tctcttcccctcaattaccacgggtggtggcttaacccgtttactattttgggcataggctaagtgtttctt 31030341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 3996589 - 3996647
Alignment:
Q  147 attatacaaactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    |||||| | ||||||||||| ||| ||||||||||||| ||||||||||||||||||||    
T  3996589 attatatatactagcgaaaagacgagcactcacgtgtccgtctttccgctctttttatt 3996647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 35367547 - 35367470
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||||||||||||||||||| ||||||  |||||||| ||||||||||  | ||||||| | |||||||||||||||    
T  35367547 actagcgaaaaaacgggcactcgcgtgtcaatctttccgttctttttattgagctaacgca-gtaaattatgaacggtg 35367470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 48621961 - 48622039
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||||| || |||| |||||||||||||||||| |||||||||||| | |||||  | |||||||| |||||||    
T  48621961 actagcgaaaagacaggcattcacgtgtctgtctttcctctctttttattatgctaacgtttaaaaattattaacggtg 48622039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 34729457 - 34729408
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    ||||||||||| ||||||||||||||||| |||||||||| |||||||||    
T  34729457 actagcgaaaagacgggcactcacgtgtccgtctttccgcactttttatt 34729408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 15646937 - 15647005
Alignment:
Q  163 aaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacg 231  Q
    |||| ||| ||||||||||| | |||||||||||||||||||| || |||||  |||||||||||||||    
T  15646937 aaaagacgagcactcacgtgcccgtctttccgctctttttattgcgctaacgtttgaaaattatgaacg 15647005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 17116468 - 17116400
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccat 300  Q
    |||||||||| |||| | || |||||||||||||| ||| ||||| ||||||||||||| |||||||||    
T  17116468 gtggttgaaggcgaaatatgcttctcttcccttcagttatcatggttggtggcttagtctgtttaccat 17116400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 10040679 - 10040600
Alignment:
Q  154 aaactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggt 233  Q
    ||||||||||||| |||| ||| |||||| | ||||||| |||||||||||| || ||||   |||||||||||||||||    
T  10040679 aaactagcgaaaagacggccacccacgtgcccgtctttctgctctttttattgcgctaacatttgaaaattatgaacggt 10040600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 19371997 - 19371922
Alignment:
Q  159 agcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||||| ||||||||| |||||||  ||||||||||||||||||| ||  ||||  | ||||||||||||||||    
T  19371997 agcgaaaagacgggcacttacgtgtccatctttccgctctttttattgcgccaacgtttcaaaattatgaacggtg 19371922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 315
Target Start/End: Original strand, 26569741 - 26569824
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggcta 315  Q
    |||||||||| ||||  ||| |||||||||||||||||| ||||| ||||||||  ||||||| || || || |||||||||||    
T  26569741 gtggttgaaggcgaaacttgcttctcttcccttcaattatcatggatggtggctatgtccgttcactatgttgggcattggcta 26569824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 27513150 - 27513228
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||||| ||||||||||||||||| |||||||  || |||||||| || ||| |  |||||||||| |||||||    
T  27513150 actagcgaaaagacgggcactcacgtgtccgtctttcttctatttttattgcgctaaagtttgaaaattattaacggtg 27513228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 36609636 - 36609710
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaac 230  Q
    ||||||||||| |||| |||| ||||| | |||||||| | ||||||||||||||||||  ||||||| ||||||    
T  36609636 actagcgaaaagacggacacttacgtgcccgtctttcccccctttttattacgttaacgtttgaaaatcatgaac 36609710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 40356269 - 40356203
Alignment:
Q  168 acgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||||||||||||| |||||||| |||||||||| | || ||| |  ||||||||||||||||||    
T  40356269 acgggcactcacgtgtttgtctttctgctctttttactgcgctaaagtttgaaaattatgaacggtg 40356203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 7809905 - 7809978
Alignment:
Q  158 tagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacg 231  Q
    |||||||||||||||||||||| ||| ||| ||||||||||||| | | || |||| | || ||||||||||||    
T  7809905 tagcgaaaaaacgggcactcacatgtttgtatttccgctcttttaagtgcgctaacacgtgtaaattatgaacg 7809978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 38174889 - 38174946
Alignment:
Q  148 ttatacaaactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    ||||| ||||||||||||| |||||||| |||||||| |||||||  |||||||||||    
T  38174889 ttatataaactagcgaaaagacgggcacacacgtgtccgtctttctactctttttatt 38174946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 4550560 - 4550508
Alignment:
Q  181 tgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggt 233  Q
    |||| |||||||||||||||||||| | ||||||  |||||||||||||||||    
T  4550560 tgtccgtctttccgctctttttattgccttaacgtttgaaaattatgaacggt 4550508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 21766029 - 21766077
Alignment:
Q  186 gtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||||||||||||||||| || |||||  ||||||||||||||||||    
T  21766029 gtctttccgctctttttattgcgctaacgtttgaaaattatgaacggtg 21766077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 39435226 - 39435170
Alignment:
Q  174 actcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaac 230  Q
    ||||||||| | |||||||||||||||||||| || |||||  ||||||||||||||    
T  39435226 actcacgtgcccgtctttccgctctttttattgcgctaacgtttgaaaattatgaac 39435170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 581572 - 581643
Alignment:
Q  158 tagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaa 229  Q
    |||||||||||||| ||| | |||| | ||||||||||| |||||||| || |||||  |||||||||||||    
T  581572 tagcgaaaaaacggacacccgcgtgcccgtctttccgctttttttattgcgctaacgtttgaaaattatgaa 581643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 7774799 - 7774846
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctcttttt 202  Q
    |||||||||||| ||| ||||||||||| | |||||||||||||||||    
T  7774799 aactagcgaaaatacgagcactcacgtgcccgtctttccgctcttttt 7774846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 16682977 - 16683048
Alignment:
Q  157 ctagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatga 228  Q
    |||||||||| ||||| ||||||||| ||||||||| | |||||||||  |||||| |  ||||||||||||    
T  16682977 ctagcgaaaagacgggtactcacgtgcctgtctttctgttctttttatcgcgttaatgtttgaaaattatga 16683048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 17657213 - 17657284
Alignment:
Q  157 ctagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatga 228  Q
    |||||||||| ||||| ||||||||| ||||||||| | |||||||||  |||||| |  ||||||||||||    
T  17657213 ctagcgaaaagacgggtactcacgtgcctgtctttctgttctttttatcgcgttaatgtttgaaaattatga 17657284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 21080021 - 21080091
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattat 226  Q
    ||||||||||| | ||||||| ||||||| |||||||  |||||||||||||| ||| |  ||||||||||    
T  21080021 actagcgaaaagatgggcacttacgtgtccgtctttctactctttttattacgctaaagtttgaaaattat 21080091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 31177038 - 31177088
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatta 206  Q
    ||||||| ||| |||| |||||||||||||||||||||  |||||||||||    
T  31177038 actagcggaaagacggacactcacgtgtctgtctttccattctttttatta 31177088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 316
Target Start/End: Original strand, 34237214 - 34237272
Alignment:
Q  258 ttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaa 316  Q
    ||||||||||||| ||||| |||||||||||||| || ||||| || ||||| ||||||    
T  34237214 ttcccttcaattatcatggttggtggcttagtcctttcaccatgttgggcataggctaa 34237272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 42963099 - 42963176
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||||| |||| |||||| |||||  ||||||||||||||||||| || || |   ||||||||||||||||||    
T  42963099 actagcgaaaagacggccactcatgtgtca-tctttccgctctttttattgcgctagcatttgaaaattatgaacggtg 42963176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 20055899 - 20055834
Alignment:
Q  165 aaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaac 230  Q
    ||||| |||||||||||||| |||||| || |||||||||| ||||||    ||||||||||||||    
T  20055899 aaaacaggcactcacgtgtccgtctttgcgttctttttattgcgttaatatttgaaaattatgaac 20055834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 27240805 - 27240850
Alignment:
Q  154 aaactagcgaaaaaacgggcactcacgtgtctgtctttccgctctt 199  Q
    ||||||||||||| ||||||||||| ||| | ||||||||||||||    
T  27240805 aaactagcgaaaagacgggcactcatgtgccagtctttccgctctt 27240850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 40658822 - 40658859
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttcc 193  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  40658822 actagcgaaaaaacgggcacccacatgtctgtctttcc 40658859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 12170767 - 12170723
Alignment:
Q  190 ttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||||||||||| ||||| |  ||||||||||||||||||    
T  12170767 ttccgctctttttattatgttaaagtttgaaaattatgaacggtg 12170723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 15470294 - 15470330
Alignment:
Q  198 tttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||||||||||||||  ||||||||||||||||||    
T  15470294 tttttattacgttaacgtttgaaaattatgaacggtg 15470330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 46759432 - 46759480
Alignment:
Q  186 gtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||||||||||||||||| || |||||  ||||||| ||||||||||    
T  46759432 gtctttccgctctttttattgcgctaacgtttgaaaataatgaacggtg 46759480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 233 - 370
Target Start/End: Complemental strand, 32196881 - 32196744
Alignment:
Q  233 tggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttctgtt 332  Q
    ||||||||||||||||||  |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32196881 tggttgaagacgaagtttagttctcttcccttcaattaacatgggtgatggcttagtccgtttaccattttaggcattggctaagagtttcttttctgct 32196782  T
Q  333 ttttgtttatgatctgttaggcaacttttgtatatatt 370  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32196781 ttttgtttatgatctgttaggcaacttttgtatatatt 32196744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 232 - 329
Target Start/End: Complemental strand, 7824202 - 7824105
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttct 329  Q
    |||||||||| |||||| |   ||||||||| ||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||| |||||||||||    
T  7824202 gtggttgaaggcgaagtattcctctcttcccctcaattaccatgggtggtggcttagcccgttcaccattttgggcataggctaagtgtttcttttct 7824105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 315
Target Start/End: Original strand, 11324501 - 11324584
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggcta 315  Q
    |||||||||| |||| |||| |||||||||||||||||| |||||||||||||||||||||||| ||||| | ||||| |||||    
T  11324501 gtggttgaaggcgaaatttgcttctcttcccttcaattatcatgggtggtggcttagtccgtttgccattatgggcataggcta 11324584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 233 - 316
Target Start/End: Complemental strand, 5667429 - 5667346
Alignment:
Q  233 tggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaa 316  Q
    ||||||||||||| |||| |  ||||| |||||||||| ||||| |||||| ||||||||||||| ||||||||||| ||||||    
T  5667429 tggttgaagacgaggtttataactctttccttcaattatcatggttggtggattagtccgtttactattttaggcataggctaa 5667346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 18673422 - 18673482
Alignment:
Q  256 tcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaa 316  Q
    ||||||| ||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||    
T  18673422 tcttcccctcaattatcatggttggtggcttagcccgtttactattttaggcattggctaa 18673482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 19145961 - 19146037
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacg 231  Q
    |||||||||||| ||||||||| ||||||| ||||||||||||||||||||   |||| |  |||||||||||||||    
T  19145961 aactagcgaaaacacgggcacttacgtgtccgtctttccgctctttttattgaattaatgtttgaaaattatgaacg 19146037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 316
Target Start/End: Original strand, 16853062 - 16853125
Alignment:
Q  253 ttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaa 316  Q
    |||||||||  |||||||| ||||||||||||||||||||||||||||||| | ||| ||||||    
T  16853062 ttctcttcctctcaattactatgggtggtggcttagtccgtttaccattttggacataggctaa 16853125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 24062884 - 24062809
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaac 230  Q
    |||||||||||| ||||||||||||||| | || ||||||||||||||||| || | |||  ||||||||||||||    
T  24062884 aactagcgaaaagacgggcactcacgtgcccgtttttccgctctttttattgcgctgacgtttgaaaattatgaac 24062809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 17943770 - 17943814
Alignment:
Q  163 aaaaaacgggcactcacgtgtctgtctttccgctctttttattac 207  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||    
T  17943770 aaaatacgggcactcacgtgcctgtctttccgctctttttattac 17943814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 316
Target Start/End: Original strand, 9907213 - 9907276
Alignment:
Q  253 ttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaa 316  Q
    |||| ||||||||||||| |||| ||||||||||| ||| || |||||||||||||| ||||||    
T  9907213 ttctattcccttcaattatcatgcgtggtggcttaatccattcaccattttaggcataggctaa 9907276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 34714970 - 34715017
Alignment:
Q  253 ttctcttcccttcaattaccatgggtggtggcttagtccgtttaccat 300  Q
    |||||||||| ||||||||||||| ||||||||||||| |||||||||    
T  34714970 ttctcttcccatcaattaccatggttggtggcttagtctgtttaccat 34715017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 12169672 - 12169746
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaac 230  Q
    ||||||||||| ||  |||||| |||| | |||||||||||||||||||| |||||| |  ||||||||||||||    
T  12169672 actagcgaaaagacaagcactctcgtgcccgtctttccgctctttttattgcgttaatgtttgaaaattatgaac 12169746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 32533129 - 32533067
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtt 294  Q
    ||||||||||| |||||||| | |||||||||| || || ||||| |||||||||||||||||    
T  32533129 gtggttgaagatgaagtttgctactcttccctttaactatcatggttggtggcttagtccgtt 32533067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 22793080 - 22793141
Alignment:
Q  170 gggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacg 231  Q
    |||||||||||||| |||||||||| |||||||||| | |||||||||| | ||||| ||||    
T  22793080 gggcactcacgtgtttgtctttccgttctttttattgcattaacgcatgtagattatcaacg 22793141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 32349183 - 32349256
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaa 229  Q
    ||||||||||| | |||||||||||||||||| ||| | |||| |||||| || |||||  |||||||||||||    
T  32349183 actagcgaaaagaggggcactcacgtgtctgttttttctctctctttattgcgctaacgtttgaaaattatgaa 32349256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 17292815 - 17292767
Alignment:
Q  248 tttgtttctcttcccttcaattaccatgggtggtggcttagtccgttta 296  Q
    |||| |||||||||||||||||| ||||| || ||||||||||||||||    
T  17292815 tttgcttctcttcccttcaattatcatggttgatggcttagtccgttta 17292767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 21236932 - 21236861
Alignment:
Q  162 gaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggt 233  Q
    ||||| |||||||||||||| ||  |||| ||||||||||||||  | ||||||||| ||||||| ||||||    
T  21236932 gaaaagacgggcactcacgtttccatcttcccgctctttttattgtgctaacgcatgtaaattataaacggt 21236861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 26854168 - 26854239
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattat 226  Q
    |||||||||||| |||||||| ||| || | ||| ||| |||||||||||| || ||||| |||||||||||    
T  26854168 aactagcgaaaagacgggcacccacttgcccgtcattctgctctttttattgcgctaacgtatgaaaattat 26854239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 33573738 - 33573663
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacg 231  Q
    ||||||||||| ||||||||||| ||  | |||||| |||||||||| || || |||||  |||||||||||||||    
T  33573738 actagcgaaaagacgggcactcaagtacccgtcttttcgctcttttttttgcgctaacgtttgaaaattatgaacg 33573663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 22469477 - 22469527
Alignment:
Q  253 ttctcttcccttcaattaccatgggtggtggcttagtccgtttaccatttt 303  Q
    |||||||||||||||||| ||||  |||||||||||||| || ||||||||    
T  22469477 ttctcttcccttcaattatcatgcttggtggcttagtccattcaccatttt 22469527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 295
Target Start/End: Complemental strand, 29599212 - 29599170
Alignment:
Q  253 ttctcttcccttcaattaccatgggtggtggcttagtccgttt 295  Q
    ||||||||||||||||||| |||| ||||||||||| ||||||    
T  29599212 ttctcttcccttcaattactatggttggtggcttagcccgttt 29599170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 335
Target Start/End: Complemental strand, 9200976 - 9200880
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttctgt 331  Q
    ||||| |||| |||||| | ||||||||||| |||||||| ||||||| || |       ||||||||| || | ||| |||||||||||||||||||||    
T  9200976 gtggtagaaggcgaagtatatttctcttcccctcaattacaatgggtgttgtc-------gtttaccatattggacataggctaagagtttcttttctgt 9200884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 297
Target Start/End: Complemental strand, 11298657 - 11298592
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttac 297  Q
    ||||||||||  |||||||||  |||||||||| || || ||||| |||||||||||||| |||||    
T  11298657 gtggttgaaggtgaagtttgtcactcttccctttaactatcatggttggtggcttagtccatttac 11298592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 7451525 - 7451581
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaa 212  Q
    ||||||||||| | || |||||||||| | ||| |||||||||||||||| ||||||    
T  7451525 actagcgaaaagatggccactcacgtgcccgtcattccgctctttttattgcgttaa 7451581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 20469691 - 20469739
Alignment:
Q  183 tctgtctttccgctctttttattacgttaacgcatgaaaattatgaacg 231  Q
    ||||| ||| ||||||||||||||| ||||||  |||||||||||||||    
T  20469691 tctgtattttcgctctttttattacattaacgtttgaaaattatgaacg 20469739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 28592934 - 28592858
Alignment:
Q  158 tagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||| ||||||| | ||||  | |||||||||||||||||||| || ||| |  ||||||||||||| ||||    
T  28592934 tagcgaaaagacgggcatttacgtacccgtctttccgctctttttattgcgctaatggttgaaaattatgaatggtg 28592858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 32531360 - 32531312
Alignment:
Q  186 gtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||||||||||||||||| || |||||  |||||||||| |||||||    
T  32531360 gtctttccgctctttttattgcgctaacgtttgaaaattattaacggtg 32531312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 232 - 370
Target Start/End: Original strand, 32160103 - 32160240
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttctgt 331  Q
    |||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  32160103 gtggttgaggacgaagtttatttctctttccttcaattaccattggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttctg- 32160201  T
Q  332 tttttgtttatgatctgttaggcaacttttgtatatatt 370  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  32160202 tttttgtttatgatctcttaggtaacttttgtatatatt 32160240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 232 - 334
Target Start/End: Original strand, 15259434 - 15259536
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttctgt 331  Q
    |||||||||| |||||| | ||||||||||| |||||||||||||||||| ||||||||||||||||||  | ||||| |||||||||||||||||||||    
T  15259434 gtggttgaaggcgaagtatatttctcttcccctcaattaccatgggtggtagcttagtccgtttaccatactgggcataggctaagagtttcttttctgt 15259533  T
Q  332 ttt 334  Q
    |||    
T  15259534 ttt 15259536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 232 - 316
Target Start/End: Original strand, 26260785 - 26260869
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaa 316  Q
    |||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||| || ||||||||||||    
T  26260785 gtggttgaaggcgaagtttgcttctcttcccttcaattatcatgggtggtggcttagtccatttaccatgttgggcattggctaa 26260869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 327
Target Start/End: Complemental strand, 27363820 - 27363725
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttctttt 327  Q
    |||||||||| ||||||    ||||||| || ||||||||||||||| |||||||||||||||||||||||| ||||| |||||||  ||||||||    
T  27363820 gtggttgaaggcgaagtactcttctctttccctcaattaccatgggttgtggcttagtccgtttaccattttgggcataggctaaggttttctttt 27363725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 27568417 - 27568480
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgttt 295  Q
    |||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27568417 gtggttgaaggcaaaatttgtttctcttcccttcaattaccatgggtggtggcttagtctgttt 27568480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 37705631 - 37705710
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||||||||| |||||||||||| | |||||||||| |||||||||||| || |||||  ||||||||||||||||||    
T  37705631 aactagcgaaaagacgggcactcacatatctgtctttctgctctttttattgcgctaacgtttgaaaattatgaacggtg 37705710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 11842773 - 11842850
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||| |||| ||||| ||||||||| | |||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  11842773 actagcaaaaagacgggaactcacgtgcc-gtctttccgctctttttattgcgttaacgtttgaaaattatgaacggtg 11842850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 33194166 - 33194088
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||||| || ||||||||||||||  ||||||||||||||||||| ||||||||  | ||||||||||| ||||    
T  33194166 actagcgaaaatacaggcactcacgtgtccttctttccgctctttttattgcgttaacgtttaaaaattatgaatggtg 33194088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 47402437 - 47402511
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaac 230  Q
    ||||||||||| ||||||||| ||||| |||||||||| ||||||||||| || |||||  ||||||||||||||    
T  47402437 actagcgaaaagacgggcacttacgtgcctgtctttccactctttttattgcggtaacgtttgaaaattatgaac 47402511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 232 - 309
Target Start/End: Original strand, 44675129 - 44675206
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcat 309  Q
    |||||||||| |||| |||| ||| |||||||||||||| ||||| ||||||||||||||||||| ||| || |||||    
T  44675129 gtggttgaaggcgaaatttgcttcccttcccttcaattatcatggttggtggcttagtccgtttatcatgttgggcat 44675206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 17128543 - 17128599
Alignment:
Q  256 tcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattgg 312  Q
    ||||||||||||||||||| | |||||||||||||| |||||||| |||||||||||    
T  17128543 tcttcccttcaattaccattgttggtggcttagtccttttaccatgttaggcattgg 17128599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 36098660 - 36098596
Alignment:
Q  257 cttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagtt 321  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||| || ||||| |||||||||||    
T  36098660 cttcccttcaattatcatggctggtggcttagtccgttcaccatgttgggcataggctaagagtt 36098596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 45478830 - 45478905
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacg 231  Q
    ||||||||||| |||||||||||||||   ||||||||||| |||||||| |||||||||||| | ||||| ||||    
T  45478830 actagcgaaaagacgggcactcacgtgctcgtctttccgctttttttattgcgttaacgcatgtatattatcaacg 45478905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 290
Target Start/End: Original strand, 9484879 - 9484937
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtc 290  Q
    |||||||||| |||| ||||||||||||||||||||||| ||||| |||||| ||||||    
T  9484879 gtggttgaaggcgaaatttgtttctcttcccttcaattatcatggttggtggtttagtc 9484937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 38619431 - 38619501
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattat 226  Q
    ||||||||||| | ||||| ||||||||| |||||||||||||||||||| |||||| |  ||||||||||    
T  38619431 actagcgaaaagatgggcattcacgtgtccgtctttccgctctttttattgcgttaaggtttgaaaattat 38619501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 48973697 - 48973750
Alignment:
Q  244 gaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttac 297  Q
    |||||||||  |||||||||| ||||| ||||||||||||||||||||||||||    
T  48973697 gaagtttgtaactcttccctttaattatcatgggtggtggcttagtccgtttac 48973750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 52626559 - 52626608
Alignment:
Q  251 gtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccat 300  Q
    |||||||||||||||||||| ||||| |||||||||||||| ||||||||    
T  52626559 gtttctcttcccttcaattatcatggttggtggcttagtccatttaccat 52626608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 1580999 - 1581069
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattat 226  Q
    ||||||||||| |||| |||||| ||||| |||||||||||||||||||| || ||| |  ||||||||||    
T  1580999 actagcgaaaagacggacactcaggtgtccgtctttccgctctttttattgcgctaaagtttgaaaattat 1581069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 327
Target Start/End: Original strand, 27264610 - 27264711
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggt------ggtggcttagtccgtttaccattttaggcattggctaagagtttctt 325  Q
    |||||||||| ||||||    |||||||||| |||||||||||||||      ||||||||||||||||||| ||||| ||||| |||||||  ||||||    
T  27264610 gtggttgaaggcgaagtactcttctcttcccctcaattaccatgggtggtggcggtggcttagtccgtttactattttgggcataggctaaggttttctt 27264709  T
Q  326 tt 327  Q
    ||    
T  27264710 tt 27264711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 34011016 - 34011090
Alignment:
Q  159 agcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggt 233  Q
    |||||||| || |||| ||||||| | |||||||||||||||||||| |  |||||  |||||||||||||||||    
T  34011016 agcgaaaagacaggcagtcacgtgcccgtctttccgctctttttattgcactaacgtttgaaaattatgaacggt 34011090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 38133104 - 38133034
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattt 302  Q
    |||||||||| |||  ||||||| |||||||||||| ||| |||| |||||||||||||| ||| ||||||    
T  38133104 gtggttgaaggcgagatttgtttttcttcccttcaactacaatggatggtggcttagtccatttgccattt 38133034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 300
Target Start/End: Complemental strand, 40708491 - 40708441
Alignment:
Q  250 tgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccat 300  Q
    ||||||||||||||||||||| ||||   ||||||||||||||||||||||    
T  40708491 tgtttctcttcccttcaattatcatgttcggtggcttagtccgtttaccat 40708441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 297
Target Start/End: Complemental strand, 28442210 - 28442145
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttac 297  Q
    ||||||||||  ||||||||| ||||||||||| || || ||||| |||||||||||||| |||||    
T  28442210 gtggttgaaggtgaagtttgtctctcttccctttaactatcatggttggtggcttagtccatttac 28442145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 46880266 - 46880213
Alignment:
Q  181 tgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||| |||||||||||||||||||| | ||||||  ||||||||||||||||||    
T  46880266 tgtccgtctttccgctctttttattgcattaacgtttgaaaattatgaacggtg 46880213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 4242319 - 4242263
Alignment:
Q  176 tcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacgg 232  Q
    ||||||||| ||||||||||||||||||||| | |||||  |||||||||| |||||    
T  4242319 tcacgtgtccgtctttccgctctttttattatgctaacgtttgaaaattattaacgg 4242263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 21336392 - 21336328
Alignment:
Q  162 gaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattat 226  Q
    ||||| ||||||| |||||||| |||||||| |||||| |||||||||||||   ||||||||||    
T  21336392 gaaaagacgggcattcacgtgtttgtctttctgctcttcttattacgttaacatttgaaaattat 21336328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 44921719 - 44921795
Alignment:
Q  157 ctagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggt 233  Q
    ||||||| || |||| |||| ||||||| || | ||||||||||||||| || |||||  |||||||||||||||||    
T  44921719 ctagcgagaagacggccacttacgtgtccgtttctccgctctttttattgcggtaacgtttgaaaattatgaacggt 44921795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 10729221 - 10729300
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||||||||| ||| | | |||||||   |||||||||||||||||||| || |||||  || |||||||||||||||    
T  10729221 aactagcgaaaagacgtgtaatcacgtgcacgtctttccgctctttttattgcgctaacgtttggaaattatgaacggtg 10729300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 316
Target Start/End: Complemental strand, 2653762 - 2653704
Alignment:
Q  258 ttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaa 316  Q
    ||||| ||||||| ||||| ||||||||||| |||||| | ||| ||||||||||||||    
T  2653762 ttcccctcaattaacatggttggtggcttagcccgttttctattctaggcattggctaa 2653704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 11409231 - 11409177
Alignment:
Q  180 gtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||||||||||||||||||||||| || ||| |  ||||||||||||| ||||    
T  11409231 gtgtctgtctttccgctctttttattgcgataaagtttgaaaattatgaatggtg 11409177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 16389144 - 16389102
Alignment:
Q  172 gcactcacgtgtctgtctttccgctctttttattacgttaacg 214  Q
    ||||||||||||||| |||| || |||||||||||||||||||    
T  16389144 gcactcacgtgtctgccttttcgttctttttattacgttaacg 16389102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 44648508 - 44648458
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    |||||||||||| |  ||||||||| |||| ||||||||||||||||||||    
T  44648508 aactagcgaaaagataggcactcacatgtccgtctttccgctctttttatt 44648458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 650120 - 650169
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    ||||||| ||| ||||||||||| ||| | ||||||||||||||||||||    
T  650120 actagcgcaaagacgggcactcatgtgcccgtctttccgctctttttatt 650169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 5411773 - 5411838
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttac 297  Q
    ||||||||||  |||||||||  |||||||||| || || ||||| || |||||||||||||||||    
T  5411773 gtggttgaaggtgaagtttgtaactcttccctttaactatcatggttgttggcttagtccgtttac 5411838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 5880745 - 5880790
Alignment:
Q  186 gtctttccgctctttttattacgttaacgcatgaaaattatgaacg 231  Q
    |||||| ||||||||||||| ||||||||  |||||||||||||||    
T  5880745 gtcttttcgctctttttattgcgttaacgtttgaaaattatgaacg 5880790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 5965559 - 5965620
Alignment:
Q  170 gggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacg 231  Q
    ||||||||||||| | ||||||| |||||||||||| |  |||||  |||||||||||||||    
T  5965559 gggcactcacgtgcccgtctttctgctctttttattgctctaacgtttgaaaattatgaacg 5965620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 9398232 - 9398187
Alignment:
Q  158 tagcgaaaaaacgggcactcacgtgtctgtctttccgctcttttta 203  Q
    ||||||||| ||||||||||||||| | |||||||| |||||||||    
T  9398232 tagcgaaaagacgggcactcacgtgcccgtctttccactcttttta 9398187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 31528893 - 31528844
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    ||||| ||||| ||| |||||||||||  |||||||||||||||||||||    
T  31528893 actagagaaaagacgagcactcacgtgcatgtctttccgctctttttatt 31528844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 48420241 - 48420168
Alignment:
Q  160 gcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggt 233  Q
    ||||||| |||||||||||||||    ||||| ||||||||||||| ||||||||  | |||||||| ||||||    
T  48420241 gcgaaaagacgggcactcacgtgctcatctttacgctctttttattgcgttaacgtttaaaaattattaacggt 48420168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 7643082 - 7643122
Alignment:
Q  278 tggtggcttagtccgtttaccattttaggcattggctaaga 318  Q
    |||||||||| |||||| |||||| ||||||||||||||||    
T  7643082 tggtggcttaatccgttcaccattataggcattggctaaga 7643122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 8209235 - 8209307
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatga 228  Q
    |||||||||||||  | |||||| ||||  ||||||||||||||| |||| ||||||||  ||||||| ||||    
T  8209235 actagcgaaaaaatagacactcatgtgttcgtctttccgctctttatattgcgttaacgattgaaaatcatga 8209307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 8527077 - 8527133
Alignment:
Q  256 tcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattgg 312  Q
    ||||||||||||||| ||||| ||||| |||||||| |||||| ||| || ||||||    
T  8527077 tcttcccttcaattatcatggttggtgacttagtccatttaccttttcagacattgg 8527133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 25392387 - 25392319
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccat 300  Q
    |||||||||| ||||||||  || | ||||||||||||| ||| | | |||||||||| ||||||||||    
T  25392387 gtggttgaaggcgaagttttcttattttcccttcaattatcattgttagtggcttagttcgtttaccat 25392319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 55)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 232 - 370
Target Start/End: Original strand, 4741033 - 4741168
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttctgt 331  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4741033 gtggttgaagacgaagtatatttctcttcccttcaattaccatgggtgatggcttagtccgtttaccattttaggcataggctaagagtttcttttctgt 4741132  T
Q  332 tttttgtttatgatctgtt-aggcaacttttgtatatatt 370  Q
    ||    |||||| |||||| |||||||| |||||||||||    
T  4741133 tt----tttatgctctgttcaggcaactattgtatatatt 4741168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 232 - 334
Target Start/End: Original strand, 13043383 - 13043485
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttctgt 331  Q
    |||||||||| |||||| | | ||||||||| |||| |||||||||||||||||||  ||||| |||||||| ||||| ||||||||||||||||||| |    
T  13043383 gtggttgaaggcgaagtatttctctcttcccctcaactaccatgggtggtggcttaacccgttcaccattttgggcataggctaagagtttcttttctat 13043482  T
Q  332 ttt 334  Q
    |||    
T  13043483 ttt 13043485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 232 - 334
Target Start/End: Original strand, 13051460 - 13051562
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttctgt 331  Q
    |||||||||| |||||| | | ||||||||| |||| |||||||||||||||||||  ||||| |||||||| ||||| ||||||||||||||||||| |    
T  13051460 gtggttgaaggcgaagtatttctctcttcccctcaactaccatgggtggtggcttaacccgttcaccattttgggcataggctaagagtttcttttctat 13051559  T
Q  332 ttt 334  Q
    |||    
T  13051560 ttt 13051562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 22177639 - 22177561
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||| ||||| |||||| ||||||||||| ||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  22177639 actagtgaaaagacgggcgctcacgtgtctctctttccgctctttttattgcgttaacgtttgaaaattatgaacggtg 22177561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 54768215 - 54768140
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacg 231  Q
    ||||||||||| | |||||||||||||||||||||| ||||||||||||| | ||||||  |||||||||||||||    
T  54768215 actagcgaaaagatgggcactcacgtgtctgtcttttcgctctttttattgcattaacgtttgaaaattatgaacg 54768140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 14788901 - 14788970
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccatt 301  Q
    |||||||||| |||| |||||||||||||||| ||||||||||| |||||||||||||| |||| |||||    
T  14788901 gtggttgaaggcgaaatttgtttctcttccctccaattaccatgagtggtggcttagtcagtttgccatt 14788970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 38176949 - 38177025
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacg 231  Q
    |||||||||||| || |||||||||||||||||||||||||| |||||||| || |||||  | |||||||||||||    
T  38176949 aactagcgaaaagacaggcactcacgtgtctgtctttccgctatttttattgcgataacgtttcaaaattatgaacg 38177025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 316
Target Start/End: Original strand, 47161022 - 47161106
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaa 316  Q
    ||||||||||  |||||||  ||||||||| |||||||||||||| ||||||||||| |||||||   |||||||||||||||||    
T  47161022 gtggttgaaggtgaagtttccttctcttccattcaattaccatggttggtggcttagaccgtttattgttttaggcattggctaa 47161106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 22102690 - 22102612
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||| ||||| ||||||||||||||| |  ||||||| ||||||||||| ||||||||  ||||||||||||||||||    
T  22102690 actagtgaaaagacgggcactcacgtgcccctctttccactctttttattgcgttaacgtttgaaaattatgaacggtg 22102612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 232 - 309
Target Start/End: Complemental strand, 20017487 - 20017410
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcat 309  Q
    ||||||||||| ||| |||||||| |||||||| || |||||||| ||||||||| ||||||| |||||||| |||||    
T  20017487 gtggttgaagaagaaatttgtttcacttcccttaaactaccatggctggtggctttgtccgttcaccattttgggcat 20017410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 6894228 - 6894304
Alignment:
Q  233 tggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcat 309  Q
    ||||||||| ||| |||| |  |||||||||||||||| ||||| |||||| ||||||||||||| |||||||||||    
T  6894228 tggttgaaggcgaggtttataactcttcccttcaattatcatggttggtggattagtccgtttactattttaggcat 6894304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 38277553 - 38277624
Alignment:
Q  163 aaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||| ||||||||||||||||  |||||||||||||||||| ||| ||||||  ||||||||| ||||||||    
T  38277553 aaaagacgggcactcacgtgttcgtctttccgctctttttactacattaacgtttgaaaattacgaacggtg 38277624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 49758212 - 49758291
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||||| ||| ||||||||||||||| | |||||| ||||||||||||| ||||||||  |||||||| |||| ||||    
T  49758212 aactagcgtaaagacgggcactcacgtgcccgtcttttcgctctttttattgcgttaacgtttgaaaattttgaagggtg 49758291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 12947969 - 12947907
Alignment:
Q  235 gttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttac 297  Q
    ||||||| |||||||||  |||||| ||||||||||| ||||||||||| |||||||||||||    
T  12947969 gttgaagtcgaagtttgcctctctttccttcaattactatgggtggtggtttagtccgtttac 12947907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 6925997 - 6926050
Alignment:
Q  244 gaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttac 297  Q
    |||||||||  |||||||||| ||||| ||||||||||||||||||||||||||    
T  6925997 gaagtttgtaactcttccctttaattatcatgggtggtggcttagtccgtttac 6926050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 21408170 - 21408114
Alignment:
Q  256 tcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattgg 312  Q
    ||||||| ||||||||||||| |||||||||||||||||| | ||| ||||||||||    
T  21408170 tcttcccctcaattaccatggttggtggcttagtccgttttctattctaggcattgg 21408114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 18388580 - 18388655
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacg 231  Q
    |||||| |||| ||||||||||||||| | |||||||||||||||||||| |  |||||  |||||||||| ||||    
T  18388580 actagcaaaaagacgggcactcacgtggcagtctttccgctctttttattgccctaacgtttgaaaattataaacg 18388655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 18461102 - 18461181
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||||||||| |||||||||||| ||| | |||||   ||||||||||| || |||||  ||||||||||||||||||    
T  18461102 aactagcgaaaagacgggcactcacatgtttatctttattctctttttattgcgctaacgtttgaaaattatgaacggtg 18461181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 311
Target Start/End: Original strand, 25845682 - 25845761
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattg 311  Q
    |||||||||| ||||||||  |||||| ||||| || |||||||| |||||||||||||| |  |||||||| |||||||    
T  25845682 gtggttgaaggcgaagtttccttctctgcccttgaactaccatggttggtggcttagtccatacaccattttgggcattg 25845761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 5811917 - 5811995
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||||| ||| |||||||| || | |||||||||||||||||||| || ||||   |||||||||| |||||||    
T  5811917 actagcgaaaagacgagcactcacatgcccgtctttccgctctttttatttcgctaacatttgaaaattattaacggtg 5811995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 18386707 - 18386765
Alignment:
Q  147 attatacaaactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    |||||||||||||||||||| |||||| ||||| |||| ||| |||| |||||||||||    
T  18386707 attatacaaactagcgaaaagacgggctctcacatgtccgtcattccactctttttatt 18386765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 14266064 - 14266015
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    |||||| |||| | ||||||||||||||| ||||||||||||||||||||    
T  14266064 actagcaaaaagaagggcactcacgtgtccgtctttccgctctttttatt 14266015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 53876934 - 53876881
Alignment:
Q  244 gaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttac 297  Q
    |||||||||  |||||||||| ||||| ||||||||||||||| ||||||||||    
T  53876934 gaagtttgtaactcttccctttaattatcatgggtggtggcttggtccgtttac 53876881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 7639710 - 7639654
Alignment:
Q  178 acgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||| |||||||||||||||||||||| || |||||  ||||||||||||| ||||    
T  7639710 acgtgcctgtctttccgctctttttattgcgctaacgtttgaaaattatgaatggtg 7639654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 7777838 - 7777766
Alignment:
Q  155 aactagcgaaaaaacggg-cactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattat 226  Q
    |||||||||||| ||||| |||||||||| | ||||| ||||||||||||||||| ||| |  ||||||||||    
T  7777838 aactagcgaaaagacggggcactcacgtgcccgtcttaccgctctttttattacgctaatgtttgaaaattat 7777766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 21091777 - 21091849
Alignment:
Q  157 ctagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaa 229  Q
    |||||||||| | || |||||||||||| |||||||| ||||||||||| |  |||||  |||||||||||||    
T  21091777 ctagcgaaaagatggacactcacgtgtccgtctttcctctctttttattgcactaacgtttgaaaattatgaa 21091849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 22258404 - 22258484
Alignment:
Q  154 aaactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||||||| ||||||| || |||| | |||||| | ||||||||||| |  ||||| ||||||||||| |||||||    
T  22258404 aaactagcgaaaagacgggcaatctcgtgcccgtcttttctctctttttatttcactaacgtatgaaaattattaacggtg 22258484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 33388634 - 33388586
Alignment:
Q  236 ttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggc 284  Q
    |||||||||||||||| |||||||||||||||||  ||||| |||||||    
T  33388634 ttgaagacgaagtttgcttctcttcccttcaatttacatggttggtggc 33388586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 45701717 - 45701789
Alignment:
Q  154 aaactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattat 226  Q
    ||||||||||||| |||| ||||||||||  |||||||||| |||||||||| || ||| |  ||||||||||    
T  45701717 aaactagcgaaaagacggacactcacgtgcttgtctttccgttctttttattgcgctaatgtttgaaaattat 45701789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 46931713 - 46931786
Alignment:
Q  159 agcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||||| |||||||||| |||| | || ||||||||  |||||||||| |||||  ||||||||||||||||||    
T  46931713 agcgaaaagacgggcactctcgtgcccgtttttccgct--ttttattacgctaacgtttgaaaattatgaacggtg 46931786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 12565299 - 12565342
Alignment:
Q  159 agcgaaaaaacgggcactcacgtgtctgtctttccgctcttttt 202  Q
    |||||||| |||||||||||||||  ||||||||||||||||||    
T  12565299 agcgaaaagacgggcactcacgtgcttgtctttccgctcttttt 12565342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 13043131 - 13043186
Alignment:
Q  175 ctcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaac 230  Q
    |||||||||  |||||||||||||||||||| || |||||  ||||||||||||||    
T  13043131 ctcacgtgttcgtctttccgctctttttattgcgctaacgtttgaaaattatgaac 13043186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 13051208 - 13051263
Alignment:
Q  175 ctcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaac 230  Q
    |||||||||  |||||||||||||||||||| || |||||  ||||||||||||||    
T  13051208 ctcacgtgttcgtctttccgctctttttattgcgctaacgtttgaaaattatgaac 13051263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 13259698 - 13259741
Alignment:
Q  159 agcgaaaaaacgggcactcacgtgtctgtctttccgctcttttt 202  Q
    |||||||| |||||||||||||||  ||||||||||||||||||    
T  13259698 agcgaaaagacgggcactcacgtgcttgtctttccgctcttttt 13259741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 265237 - 265159
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggt 233  Q
    |||||||||||| | ||||| |  |||| | |||||||||||||||||||| || |||||  ||||| |||||||||||    
T  265237 aactagcgaaaagatgggcatttgcgtgcccgtctttccgctctttttattgcgctaacgtttgaaagttatgaacggt 265159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 2454437 - 2454363
Alignment:
Q  160 gcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||| ||||| ||||||||||||  ||||| ||| ||||||||  ||||||   ||||||||||||||||||    
T  2454437 gcgaaaagacgggtactcacgtgtctaactttctgctttttttattttgttaacatttgaaaattatgaacggtg 2454363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 5907116 - 5907194
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||| ||||| ||||| | ||||||| |  |||||||||||||||||||||| |||||  | |||||||||| |||||    
T  5907116 actagtgaaaagacgggtagtcacgtgcccatctttccgctctttttattacgctaacgtttcaaaattatgagcggtg 5907194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 35379637 - 35379579
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacg 214  Q
    ||||||||||| | ||| || |||||||| |||||||||||||||||||| || |||||    
T  35379637 actagcgaaaagatgggtacccacgtgtccgtctttccgctctttttattgcgctaacg 35379579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 53546614 - 53546576
Alignment:
Q  91 catctcattcattcacactaaacattgatctgcatttaa 129  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  53546614 catctcattcatccacactaaacattgttctgcatttaa 53546576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 5530891 - 5530826
Alignment:
Q  149 tatacaaactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacg 214  Q
    |||| ||||||||||||| |  |||||||||||| | ||||||| |||||||||||| | ||||||    
T  5530891 tataaaaactagcgaaaagatcggcactcacgtgcccgtctttctgctctttttattgcattaacg 5530826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 8074706 - 8074647
Alignment:
Q  244 gaagtttgtttctcttcccttcaattaccatgggtggtgg---cttagtccgtttaccat 300  Q
    ||||| || ||||||| |||||||||| ||||||||||||   |||||||||||||||||    
T  8074706 gaagtatgcttctctttccttcaattatcatgggtggtggtggcttagtccgtttaccat 8074647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 17438550 - 17438630
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgt--ctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||||| ||  ||||||||||||  |||||||| |||||||||| || || ||| |  ||||||||||||||||||    
T  17438550 actagcgaaaagacacgcactcacgtgtacctgtcttttcgctctttttgttgcgctaatgtttgaaaattatgaacggtg 17438630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 19225168 - 19225119
Alignment:
Q  185 tgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||  ||||||||||| ||||||||  ||||||||||||||||||    
T  19225168 tgtctttctactctttttattgcgttaacgtttgaaaattatgaacggtg 19225119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 19245585 - 19245528
Alignment:
Q  173 cactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaac 230  Q
    |||| ||||||| |||||||||||||||||||| || |||||  | ||||||||||||    
T  19245585 cacttacgtgtccgtctttccgctctttttattgcgctaacgtttaaaaattatgaac 19245528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 21078914 - 21078857
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaa 212  Q
    |||||| ||||| | ||||||||||||| | ||||||||||||| |||||| ||||||    
T  21078914 aactagagaaaagatgggcactcacgtgcccgtctttccgctctctttattgcgttaa 21078857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 22534037 - 22534102
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttac 297  Q
    ||||||||||  |||||||||  ||||||| || || || |||||||||||||||||||| |||||    
T  22534037 gtggttgaaggtgaagtttgtcactcttccttttaactatcatgggtggtggcttagtccatttac 22534102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 297
Target Start/End: Complemental strand, 29542452 - 29542387
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttac 297  Q
    ||||||||||  |||||||||  |||||||||| || || ||||| |||||||||||||| |||||    
T  29542452 gtggttgaaggtgaagtttgtcactcttccctttaactatcatggttggtggcttagtccatttac 29542387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 31766460 - 31766517
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaac 213  Q
    |||||||||||   ||| ||||||||||| ||||||| |||||||||||| |||||||    
T  31766460 actagcgaaaagttgggtactcacgtgtccgtctttcggctctttttattgcgttaac 31766517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 41878726 - 41878791
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttac 297  Q
    ||||||||||  |||||||||  |||||||||| || || ||||| |||||||||||||| |||||    
T  41878726 gtggttgaaggtgaagtttgtcactcttccctttaactatcatggttggtggcttagtccatttac 41878791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 45648391 - 45648334
Alignment:
Q  176 tcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggt 233  Q
    |||| |||| || ||||||||||||||||| || |||| |||| ||||||||||||||    
T  45648391 tcacatgtccgtttttccgctctttttattgcgctaacacatgtaaattatgaacggt 45648334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 13149844 - 13149892
Alignment:
Q  159 agcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattac 207  Q
    |||||||| | |||||||||||||  ||||||||||||||| |||||||    
T  13149844 agcgaaaagatgggcactcacgtgcttgtctttccgctcttattattac 13149892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 22152531 - 22152459
Alignment:
Q  159 agcgaaaaaa-cgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaac 230  Q
    |||||||||| | |||||||||||| | || |||||||||||||||||  | |||||  ||||||||||||||    
T  22152531 agcgaaaaaagccggcactcacgtgcccgtttttccgctctttttattgtggtaacgtttgaaaattatgaac 22152459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 23050173 - 23050233
Alignment:
Q  256 tcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaa 316  Q
    ||||||||| || | |||||| |||||||||||||| ||||| ||  ||||||||||||||    
T  23050173 tcttcccttaaactcccatggttggtggcttagtccatttactatcctaggcattggctaa 23050233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 25842589 - 25842533
Alignment:
Q  177 cacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggt 233  Q
    |||||| | |||||||| |||||||||||||  |||||  |||||||||||||||||    
T  25842589 cacgtgcccgtctttccactctttttattacactaacggttgaaaattatgaacggt 25842533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 49430447 - 49430407
Alignment:
Q  161 cgaaaaaacgggcactcacgtgtctgtctttccgctctttt 201  Q
    |||||| ||||||||| |||||||||| |||||||||||||    
T  49430447 cgaaaacacgggcacttacgtgtctgtttttccgctctttt 49430407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 21122498 - 21122420
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||||||||||| | |||||| || ||||||||||||||||||||||||||| ||||  ||||||||||||||||||    
T  21122498 actagcgaaaaaacagacactcatgtatctgtctttccgctctttttattacgtcaacgtttgaaaattatgaacggtg 21122420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 35519345 - 35519269
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacg 231  Q
    |||||||||||| |||||||||||| |||| ||||||||||||||||||||  |||||||  |||||||||||||||    
T  35519345 aactagcgaaaagacgggcactcacatgtccgtctttccgctctttttattgtgttaacgtttgaaaattatgaacg 35519269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 5190704 - 5190629
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacg 231  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||| || ||||   |||||||||||||||    
T  5190704 actagcgaaaagacgggcactcacctgtctgtctttccgctctttttattgcgctaacatttgaaaattatgaacg 5190629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 315
Target Start/End: Original strand, 52578018 - 52578101
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggcta 315  Q
    ||||||||||  ||||||||| ||||||||||||||||| ||||| |||||||||||| ||||| ||||| ||||||| |||||    
T  52578018 gtggttgaaggtgaagtttgtatctcttcccttcaattatcatggttggtggcttagtgcgtttgccattctaggcataggcta 52578101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 316
Target Start/End: Original strand, 19846574 - 19846646
Alignment:
Q  244 gaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaa 316  Q
    ||||| || |||||||||||||||||| |||||||||||| |||||||||||||||| || ||||||| ||||    
T  19846574 gaagtatgcttctcttcccttcaattatcatgggtggtggattagtccgtttaccatgttgggcattgtctaa 19846646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 37772967 - 37773026
Alignment:
Q  253 ttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattgg 312  Q
    |||||||||||||||||||||||| |||||||||||||| || |||||||| ||||||||    
T  37772967 ttctcttcccttcaattaccatggttggtggcttagtcctttcaccattttgggcattgg 37773026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 7438047 - 7438124
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggt 233  Q
    ||||||||||| |||||| |||||||| | ||||||||||| ||||||||||| |||||  || ||||||||||||||    
T  7438047 actagcgaaaagacgggccctcacgtgcccgtctttccgctatttttattacgctaacgtttgtaaattatgaacggt 7438124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 13608989 - 13608945
Alignment:
Q  256 tcttcccttcaattaccatgggtggtggcttagtccgtttaccat 300  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  13608989 tcttcccttcaattaccatggttggtggcttagtccgtttaccat 13608945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 1364007 - 1363924
Alignment:
Q  148 ttatacaaactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacg 231  Q
    ||||| ||||||||||||| ||||||||||||||||| | ||||| | |||||||||| || ||||   |||||||||||||||    
T  1364007 ttatataaactagcgaaaagacgggcactcacgtgtccgactttctgttctttttattgcgctaacctttgaaaattatgaacg 1363924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 20702790 - 20702719
Alignment:
Q  162 gaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggt 233  Q
    ||||| ||||||||||||||| | |||||||||||||||||||| || |||||  |||||||||| ||||||    
T  20702790 gaaaagacgggcactcacgtgcccgtctttccgctctttttattgcgctaacgtttgaaaattattaacggt 20702719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 23775336 - 23775395
Alignment:
Q  146 cattatacaaactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    ||||||||| ||||||||||| |||| || ||||||||| ||||||||||||||||||||    
T  23775336 cattatacatactagcgaaaagacggacattcacgtgtccgtctttccgctctttttatt 23775395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 17702723 - 17702658
Alignment:
Q  170 gggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtgg 235  Q
    ||||||||||||||   ||||||||||||||||||| || |||||  |||||||||||||||||||    
T  17702723 gggcactcacgtgttcatctttccgctctttttattgcgctaacgtttgaaaattatgaacggtgg 17702658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 44277093 - 44277142
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    ||||||||||| |||||||||||||||  |||||||||||||||||||||    
T  44277093 actagcgaaaagacgggcactcacgtgcatgtctttccgctctttttatt 44277142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 2548676 - 2548616
Alignment:
Q  174 actcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||||| ||||||||||||||||| || | ||||||  ||||||||||||||||||    
T  2548676 actcacgtgtccgtctttccgctctttttgttgcattaacgtgtgaaaattatgaacggtg 2548616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 8814058 - 8814114
Alignment:
Q  256 tcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattgg 312  Q
    ||||||| ||||||||||||| |||||||||||||||||| | ||| ||||||||||    
T  8814058 tcttcccctcaattaccatggttggtggcttagtccgttttctattctaggcattgg 8814114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 9831417 - 9831480
Alignment:
Q  231 ggtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtt 294  Q
    ||||||||||| |||| || ||| | |||||||||||||| ||||| |||||||||||||||||    
T  9831417 ggtggttgaaggcgaaattcgttacacttcccttcaattatcatggctggtggcttagtccgtt 9831480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 23091109 - 23091187
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||||| ||| ||| ||| ||| | |||||||||||||||||||| ||||| ||  |||||||||||| |||||    
T  23091109 actagcgaaaagacgagcattcatgtgcccgtctttccgctctttttattgcgttaccgtttgaaaattatgagcggtg 23091187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 297
Target Start/End: Complemental strand, 11131252 - 11131187
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttac 297  Q
    ||||||||||  |||||||||  |||||||||| ||||| ||||| |||||||||||||| |||||    
T  11131252 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttttac 11131187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 316
Target Start/End: Original strand, 13137113 - 13137198
Alignment:
Q  231 ggtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaa 316  Q
    |||||||||||  ||| |||| | |||||  ||||||||| ||||| ||||||||||||||||||||| |  ||||||| ||||||    
T  13137113 ggtggttgaaggtgaaatttgctactcttttcttcaattatcatggttggtggcttagtccgtttaccttactaggcataggctaa 13137198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 22495401 - 22495352
Alignment:
Q  263 ttcaattaccatgggtggtggcttagtccgtttaccattttaggcattgg 312  Q
    |||||||||||||| |||||||||| |||||| |||||| ||||||||||    
T  22495401 ttcaattaccatggttggtggcttaatccgttcaccattctaggcattgg 22495352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 54870871 - 54870818
Alignment:
Q  244 gaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttac 297  Q
    |||||||||  |||||||||| ||||| ||||| ||||||||||||||||||||    
T  54870871 gaagtttgtaactcttccctttaattatcatggttggtggcttagtccgtttac 54870818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 161049 - 161001
Alignment:
Q  186 gtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||||||||||||||||| ||| |  ||||||||||||||||||    
T  161049 gtctttccgctctttttattacgctaatgtttgaaaattatgaacggtg 161001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 234
Target Start/End: Complemental strand, 5499279 - 5499199
Alignment:
Q  154 aaactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||||||| ||||||||||| ||| |  ||| ||| ||||||||||| |  |||||  ||||||||||||||||||    
T  5499279 aaactagcgaaaagacgggcactcatgtgcccatctctccactctttttattgctctaacgtttgaaaattatgaacggtg 5499199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 20817993 - 20818069
Alignment:
Q  158 tagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||| || ||||||||||||  |||||||||| |||||||||| | ||||   ||||||| |||||||||||    
T  20817993 tagcgaaaagactggcactcacgtgcttgtctttccgttctttttattgcattaatttatgaaaaatatgaacggtg 20818069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 9778982 - 9779029
Alignment:
Q  158 tagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    ||||||||| ||| ||| |||||| |||||||||||||||||||||||    
T  9778982 tagcgaaaatacgagcattcacgtttctgtctttccgctctttttatt 9779029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 17702364 - 17702435
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattat 226  Q
    |||||||||||| ||||||||||| ||| |  ||||||||||||||||| | || |||||  ||||||||||    
T  17702364 aactagcgaaaagacgggcactcatgtgcccctctttccgctctttttactgcgctaacgtttgaaaattat 17702435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 27270071 - 27270012
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtcc 291  Q
    |||||||||| |||| |||  ||| |||||||||||||| ||||| ||||||||||||||    
T  27270071 gtggttgaaggcgaaatttccttcacttcccttcaattatcatggttggtggcttagtcc 27270012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 54855891 - 54855970
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||||||||| ||||||| ||||||| | |||||||| |||||||| || |||||||   | |||||||| |||||||    
T  54855891 aactagcgaaaagacgggcattcacgtgcccgtctttccactctttttgttgcgttaacttttaaaaattattaacggtg 54855970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 9170972 - 9170922
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    ||||| |||||| || |||||||||||||| || |||||||||||||||||    
T  9170972 aactaacgaaaagacaggcactcacgtgtccgtttttccgctctttttatt 9170922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 316
Target Start/End: Original strand, 45637490 - 45637548
Alignment:
Q  258 ttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaa 316  Q
    ||||| ||||||| ||||| ||||||||||| |||||| | ||| ||||||||||||||    
T  45637490 ttcccctcaattaacatggttggtggcttagcccgttttctattctaggcattggctaa 45637548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 321
Target Start/End: Complemental strand, 30972453 - 30972364
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagtt 321  Q
    |||| ||||| |||| |||  ||||||||||||||| || ||||| |||||||||||||  || || ||||| ||||| |||||| ||||    
T  30972453 gtggctgaaggcgaaatttccttctcttcccttcaactatcatggctggtggcttagtcatttcactatttttggcataggctaatagtt 30972364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 49320300 - 49320361
Alignment:
Q  172 gcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggt 233  Q
    |||||| |||| ||||||||| ||||||||||||  |||||||  ||||||||| |||||||    
T  49320300 gcactcgcgtgcctgtctttctgctctttttattgtgttaacgtttgaaaattaagaacggt 49320361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 5720238 - 5720286
Alignment:
Q  186 gtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||| | ||||||||||| ||||||||  ||||||||||||||||||    
T  5720238 gtcttttcactctttttattgcgttaacgtttgaaaattatgaacggtg 5720286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 12115053 - 12115097
Alignment:
Q  256 tcttcccttcaattaccatgggtggtggcttagtccgtttaccat 300  Q
    ||||||||||||||| ||||| | |||||| ||||||||||||||    
T  12115053 tcttcccttcaattatcatggtttgtggctcagtccgtttaccat 12115097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 22653321 - 22653389
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccat 300  Q
    |||||||||| |||| |||| ||   || |||||||||| ||||| ||||||||||||| |||||||||    
T  22653321 gtggttgaaggcgaaatttgcttacattaccttcaattatcatggttggtggcttagtctgtttaccat 22653389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 39670433 - 39670361
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatga 228  Q
    ||||||||||| ||| | ||||||||| |  | ||||||||||||||||| |||||| |  ||||||||||||    
T  39670433 actagcgaaaagacgtgtactcacgtgcccatatttccgctctttttattgcgttaatgtttgaaaattatga 39670361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 8462578 - 8462510
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccat 300  Q
    |||||||||| |||| |||| |||||||||||||||||| ||||| ||||||||||||| |||||||||    
T  8462578 gtggttgaaggcgaaatttgcttctcttcccttcaattatcatggttggtggcttagtctgtttaccat 8462510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 234
Target Start/End: Complemental strand, 13469438 - 13469358
Alignment:
Q  154 aaactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||| ||||||| ||||||||||||||| | ||||||||||||||||||||| ||||| |  ||||||||||||| ||||    
T  13469438 aaacttgcgaaaagacgggcactcacgtgcccgtctttccgctctttttattatgttaaagtttgaaaattatgaaaggtg 13469358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 27022608 - 27022650
Alignment:
Q  163 aaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  27022608 aaaaaacgggcactcacgtgtctgtctttccgctctttttatt 27022650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 13150201 - 13150141
Alignment:
Q  174 actcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||||| |||||||||||||||||||| ||||||||  |||||||||| |||||||    
T  13150201 actcacgtgtccgtctttccgctctttttattgcgttaacgtttgaaaattattaacggtg 13150141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 15899039 - 15898963
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacgg 232  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||| || |  |||||  |||||||||| |||||    
T  15899039 actagcgaaaagacgggcactcacgtgtccgtctttccgctctttttgttgcactaacgtttgaaaattataaacgg 15898963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 38738483 - 38738543
Alignment:
Q  256 tcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaa 316  Q
    ||||||| ||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||    
T  38738483 tcttcccctcaattatcatggttggtggcttagcccgtttactattttaggcattggctaa 38738543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 35451037 - 35451116
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||||||||| ||| | |||||||||   || ||||||||||||||||| |||||||| |||||||||||||| ||||    
T  35451037 aactagcgaaaagacgtgtactcacgtgcacgtttttccgctctttttattgcgttaacgtatgaaaattatgaatggtg 35451116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 1759441 - 1759519
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||||| |||| |||||| ||||| |||| ||||||||||||||| || |||||  ||||||||| ||||||||    
T  1759441 actagcgaaaagacggtcactcaagtgtccgtctctccgctctttttattgcgctaacgtttgaaaattaagaacggtg 1759519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 15044083 - 15044160
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||||| ||||||||||||||| |||| |||| |||| ||||||| || |||||  ||||||||||||||||||    
T  15044083 actagcgaaaagacgggcactcacgtgcctgtttttctgctc-ttttattgcgctaacgtttgaaaattatgaacggtg 15044160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 233
Target Start/End: Complemental strand, 5918910 - 5918833
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggt 233  Q
    ||||||||||| |||| ||||||||||   |||||||||||||||||||| || |||||  |||||||||| ||||||    
T  5918910 actagcgaaaagacggacactcacgtgctcgtctttccgctctttttattgcgctaacgtttgaaaattattaacggt 5918833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 11929402 - 11929447
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttt 201  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||    
T  11929402 actagcgaaaagacgggcactcacgtgtatgtctttccgctctttt 11929447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 11353040 - 11352972
Alignment:
Q  146 cattatacaaactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacg 214  Q
    |||||||  |||||| ||||| |||| |||||||||| |||||||||||||||||||||| || |||||    
T  11353040 cattatattaactagtgaaaagacggacactcacgtgcctgtctttccgctctttttattgcgctaacg 11352972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 18994542 - 18994617
Alignment:
Q  159 agcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||||| || |||||||||||| | |||||||||||||||||||| ||   |||  ||||||||||||||||||    
T  18994542 agcgaaaagactggcactcacgtgcccgtctttccgctctttttattgcgccgacgtttgaaaattatgaacggtg 18994617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 33191268 - 33191206
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtt 294  Q
    ||||||||||  ||| |||| | |||||||||||||||| ||||| |||||||||||||||||    
T  33191268 gtggttgaagttgaaatttgatactcttcccttcaattatcatggttggtggcttagtccgtt 33191206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 41666543 - 41666621
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||||| || | |||||||||||| ||||||| |||||||||||| | |||| |  |||| |||||||||||||    
T  41666543 actagcgaaaagacagtcactcacgtgtccgtctttctgctctttttattgccttaatgtttgaatattatgaacggtg 41666621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 12838837 - 12838771
Alignment:
Q  164 aaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaac 230  Q
    ||||| || |||||| ||||| |||||||| ||||||||||| |||||| |  ||||||||||||||    
T  12838837 aaaaaaggccactcatgtgtccgtctttcctctctttttattgcgttaatgtttgaaaattatgaac 12838771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 23085702 - 23085624
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||||| |||||||||||| |  | ||||||||| |||||||||| |||||  |   |||||||||||||||||    
T  23085702 actagcgaaaagacgggcactcacatacccgtctttccgttctttttattgcgttattgttagaaaattatgaacggtg 23085624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 27837823 - 27837753
Alignment:
Q  160 gcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaac 230  Q
    ||||||| ||| ||| ||||||||| |||| ||||||||||||||| || || ||  ||||||||||||||    
T  27837823 gcgaaaagacgagcattcacgtgtccgtctctccgctctttttattgcgctagcgtttgaaaattatgaac 27837753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 33192331 - 33192389
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacg 214  Q
    ||||||||||| | | ||||||||||||||||||||||  |||||||||| || |||||    
T  33192331 actagcgaaaagatgagcactcacgtgtctgtctttccattctttttattgcgctaacg 33192389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 34180324 - 34180246
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||||||| |||| |||||||||| | ||| ||||| | ||||| ||||| |||||  || |||||||||||||||    
T  34180324 actagcgaaaagacggacactcacgtgcccgtcattccggtatttttcttacgctaacgtttgtaaattatgaacggtg 34180246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 38804458 - 38804528
Alignment:
Q  158 tagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatga 228  Q
    ||||||||| | ||||| ||| ||| | |||||||||||||||||||| || |||||  ||||||||||||    
T  38804458 tagcgaaaagatgggcattcatgtgcccgtctttccgctctttttattgcgctaacgtttgaaaattatga 38804528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 45440930 - 45440852
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggt 233  Q
    ||||||||||||  |||||||||| ||||||||||||||||| ||| || | || | |||  |||||||||||| ||||    
T  45440930 aactagcgaaaaggcgggcactcatgtgtctgtctttccgctatttctaatgcgctgacgtttgaaaattatgagcggt 45440852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 329
Target Start/End: Original strand, 5752015 - 5752112
Alignment:
Q  232 gtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttct 329  Q
    |||||||||| |||||| |   ||||||||| ||||||| ||||| |||| ||||||  |||| |||||||| ||||| | | ||| |||||||||||    
T  5752015 gtggttgaaggcgaagtattcctctcttcccctcaattatcatggctggtagcttagctcgttcaccattttgggcatagaccaagtgtttcttttct 5752112  T

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Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 7020191 - 7020146
Alignment:
Q  189 tttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||||| |||||||||||||||||  ||||||||| ||||||||    
T  7020191 tttccgctatttttattacgttaacgtttgaaaattacgaacggtg 7020146  T

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Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 8889788 - 8889755
Alignment:
Q  172 gcactcacgtgtctgtctttccgctctttttatt 205  Q
    ||||||||||||| ||||||||||||||||||||    
T  8889788 gcactcacgtgtccgtctttccgctctttttatt 8889755  T

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Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 9503255 - 9503206
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    ||||||||||| ||||||||||  ||||| |||||||| |||||||||||    
T  9503255 actagcgaaaagacgggcactcgagtgtccgtctttcctctctttttatt 9503206  T

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Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 11916121 - 11916174
Alignment:
Q  177 cacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaac 230  Q
    |||||| | |||||| ||||||||||||||||||||||  ||||||| ||||||    
T  11916121 cacgtgcccgtcttttcgctctttttattacgttaacgtttgaaaatgatgaac 11916174  T

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Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 11941849 - 11941804
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttt 201  Q
    ||||||||||| |||||||| |||||||  ||||||||||||||||    
T  11941849 actagcgaaaagacgggcacccacgtgtacgtctttccgctctttt 11941804  T

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Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 300
Target Start/End: Original strand, 33282848 - 33282917
Alignment:
Q  231 ggtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccat 300  Q
    |||||||||||   || |||| |||||| ||  ||||||| ||||| |||||||||||||||||||||||    
T  33282848 ggtggttgaaggaaaaatttgcttctctccctctcaattatcatggttggtggcttagtccgtttaccat 33282917  T

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Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 43922480 - 43922447
Alignment:
Q  176 tcacgtgtctgtctttccgctctttttattacgt 209  Q
    ||||||||| ||||||||||||||||||||||||    
T  43922480 tcacgtgtccgtctttccgctctttttattacgt 43922447  T

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Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 15916926 - 15916970
Alignment:
Q  187 tctttccgctctttttattacgttaacgcatgaaaattatgaacg 231  Q
    ||||||||||||||||||| || |||||  |||||||||||||||    
T  15916926 tctttccgctctttttattccgctaacgtttgaaaattatgaacg 15916970  T

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Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 41941081 - 41941137
Alignment:
Q  178 acgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    ||||||| ||||||| | ||||||||||||| | |||  ||||||||||||||||||    
T  41941081 acgtgtccgtctttctgttctttttattacgctgacgtttgaaaattatgaacggtg 41941137  T

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Target: scaffold0014 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 21074 - 21157
Alignment:
Q  143 ttccattatacaaactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattat 226  Q
    ||||||||| | |||||||||||| |||||||||||| || | ||||||||||||||||||||  ||||||   ||||||||||    
T  21074 ttccattattccaactagcgaaaagacgggcactcacatgcccgtctttccgctctttttattgtgttaacatttgaaaattat 21157  T

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Target: scaffold0014; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 21698 - 21649
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    ||||||||||| || | |||||||||| | ||||||||||||||||||||    
T  21698 actagcgaaaagacagacactcacgtgaccgtctttccgctctttttatt 21649  T

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Target: scaffold0293 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 4755 - 4682
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaa 229  Q
    ||||||| ||| || |||||||||||||| ||||||||||||||||||||||| ||| |  | |||||||||||    
T  4755 actagcgcaaagacaggcactcacgtgtccgtctttccgctctttttattacgataatgtttcaaaattatgaa 4682  T

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Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 227533 - 227484
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttatt 205  Q
    ||||||||||| ||| ||||||||||||| ||||||||||||||||||||    
T  227533 actagcgaaaagacgagcactcacgtgtccgtctttccgctctttttatt 227484  T

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Target: scaffold0003; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 226142 - 226217
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacg 231  Q
    ||||||||||||||| |||||||||| ||  ||| |||||||||||||||||| |||| | || | ||||||||||    
T  226142 actagcgaaaaaacgagcactcacgtttccatctctccgctctttttattacgctaacacgtgtagattatgaacg 226217  T

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Target: scaffold0268 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 21482 - 21407
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaac 230  Q
    ||||||| |||| | |||||||| |||||| |||||||||||||||||||| || ||| |  ||||||||||||||    
T  21482 aactagcaaaaagatgggcactcgcgtgtccgtctttccgctctttttattgcgctaaagtttgaaaattatgaac 21407  T

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Target: scaffold0068 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 57415 - 57490
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacg 231  Q
    ||||| ||||| ||||||||||||||| | ||||||| ||| |||||||| || |||||  |||||||||||||||    
T  57415 actagagaaaatacgggcactcacgtgcccgtctttctgctatttttattgcgctaacgtttgaaaattatgaacg 57490  T

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Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 254766 - 254695
Alignment:
Q  163 aaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||| |||| ||||||||||||||||||||| ||||||||||| |  |||||  |||| |||||||||||||    
T  254766 aaaagacggacactcacgtgtctgtctttccactctttttattgcactaacgtttgaagattatgaacggtg 254695  T

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Target: scaffold0707 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 169 - 244
Alignment:
Q  156 actagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacg 231  Q
    ||||||||||| ||||||||||| ||  | |||||| |||||||||| || || |||||  |||||||||||||||    
T  169 actagcgaaaagacgggcactcaagtacccgtcttttcgctcttttttttgcgctaacgtttgaaaattatgaacg 244  T

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Target: scaffold0649 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 8251 - 8302
Alignment:
Q  180 gtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacg 231  Q
    ||||| ||||||||||||||||||||||| |||||  | |||||||||||||    
T  8251 gtgtccgtctttccgctctttttattacgctaacgtttaaaaattatgaacg 8302  T

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Target: scaffold0196 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 8503 - 8582
Alignment:
Q  155 aactagcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattacgttaacgcatgaaaattatgaacggtg 234  Q
    |||||||||||| || |||||  ||||| |||||| ||||||||||||||| |||| |||   |||||||||||| ||||    
T  8503 aactagcgaaaagacaggcacatacgtgcctgtctatccgctctttttattgcgttgacgttcgaaaattatgaaaggtg 8582  T

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Target: scaffold0795 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 300
Target Start/End: Original strand, 2191 - 2260
Alignment:
Q  231 ggtggttgaagacgaagtttgtttctcttcccttcaattaccatgggtggtggcttagtccgtttaccat 300  Q
    |||||||||||  |||| | | |||||| ||||||||||| ||||| |||||||| ||||| ||||||||    
T  2191 ggtggttgaaggtgaagctcgcttctctccccttcaattatcatggttggtggctcagtccatttaccat 2260  T

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Target: scaffold0047 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 64331 - 64275
Alignment:
Q  253 ttctcttcccttcaattaccatgggtggtggcttagtccgtttaccattttaggcat 309  Q
    ||||||| |||||||||| ||||  |||||||||||||| || |||||||| |||||    
T  64331 ttctctttccttcaattatcatgcttggtggcttagtcctttcaccattttgggcat 64275  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 155158 - 155110
Alignment:
Q  159 agcgaaaaaacgggcactcacgtgtctgtctttccgctctttttattac 207  Q
    |||||||| | |||||||||||||  ||||||||||||||| |||||||    
T  155158 agcgaaaagatgggcactcacgtgcttgtctttccgctcttattattac 155110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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