View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17799_low_6 (Length: 374)
Name: NF17799_low_6
Description: NF17799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17799_low_6 |
 | |
|
| [»] scaffold0103 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 184; Significance: 2e-99; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 21 - 336
Target Start/End: Complemental strand, 2593074 - 2592762
Alignment:
| Q |
21 |
aacaagactacttcaataagtgtcatctccctaactccgcttattttctaggtgtgagccatggttttattcatatatgatatgatatagagatagatag |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2593074 |
aacaagactacttcaataagtgtcatctccctaactccgcttattttctaggtgggagccatggttttattcatata------gatatagagatagatag |
2592981 |
T |
|
| Q |
121 |
agcaaaaattatacttagttgaaaaaaggatttaactatattacaatataacgatatagtaattagcataggaattgtcttatgttagaaaagcctacaa |
220 |
Q |
| |
|
| |||| | ||||| |||| | |||| ||||||||||| ||||||||||||| ||||||| |||| |||||||||||| |||||||||| || ||||||| |
|
|
| T |
2592980 |
accaaagaatatacatagtagcaaaa-ggatttaactaaattacaatataaccatatagttattatcataggaattgtgttatgttagacaaacctacaa |
2592882 |
T |
|
| Q |
221 |
ttttgatgattgtagaaatgaaatttttaagaagctaaggtgaaaccaatttccctgaacctcttctcaattttcttttcaatttcacct----attacc |
316 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||||| |||||||||||||| |||||||||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
2592881 |
ttttgatgattatagaaatgaaaattttaggaagctaagttgaaaccaatttccttgaacctcttctcagttttcttttcaatttcgcctattaattact |
2592782 |
T |
|
| Q |
317 |
acaacaactacatcatcaac |
336 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
2592781 |
acaacaactacatcatcaac |
2592762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 2624604 - 2624311
Alignment:
| Q |
19 |
tgaacaagactacttcaataagtgtcatctccctaactccgcttattttctaggtgtgagccatggttttattcatatatgatatgatat-----agaga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||| |||| |||||| ||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2624604 |
tgaacaagactacttcaataagtgtcatctccttaactccactttttttttaggtgggagtcatggttttattcatatatgatatgatatgatatagaga |
2624505 |
T |
|
| Q |
114 |
tagatagagcaaaaattatacttagttgaaaaaaggatttaactatattacaatataacgatatagtaattagcataggaattgtcttatgttagaaaag |
213 |
Q |
| |
|
| ||||| ||| ||||||| |||| || |||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
2624504 |
aatatagaataaagattatacatagtagagaaaaggatttaactatattacaatataaacatatagtaattagcatataaattgtgttatgttagaaaaa |
2624405 |
T |
|
| Q |
214 |
cctacaattttgatgattgtagaaatgaaatttttaagaagctaaggtgaaaccaatttccctgaacctcttctcaattttcttttcaatttcacc |
309 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
2624404 |
cctacaattttgatgattgtagaaatg--attttttggaagctaaggtgaaaccaatttctctgaacttcttctcaattttcttttcaatttcacc |
2624311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 2635050 - 2634879
Alignment:
| Q |
19 |
tgaacaagactacttcaataagtgtcatctccctaactccgcttattttctaggtgtgagccatggttttattcatatatgatatgatatagagatagat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2635050 |
tgaacaagactacttcaataagtgtcatctccctaactccgcttattttctaggtgggagccatggttttattcatatatgatatgatatagaaatagat |
2634951 |
T |
|
| Q |
119 |
agagcaaaaattatacttagttgaaaaaaggatttaactatattacaatataacgatatagtaattagcata |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2634950 |
agagcaaaaattatacttagttgaaaaaaggatttaactatattacaatataacgatatagtaattagcata |
2634879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 162 - 333
Target Start/End: Original strand, 2568334 - 2568503
Alignment:
| Q |
162 |
tacaatataacgatatagtaattagcataggaattgtcttatgttagaaaagcctacaattttgatgattgtagaaatgaaatttttaagaagctaaggt |
261 |
Q |
| |
|
||||| ||||| |||||||||||| |||||||||||||||||||| ||||| || |||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
2568334 |
tacaaaataactatatagtaattaacataggaattgtcttatgtttgaaaaaccaacaattttgatgattgtacaaatgaaattttttagaagctaaggg |
2568433 |
T |
|
| Q |
262 |
gaaaccaatttccctgaacctcttctcaattttcttttcaatttcacctattaccacaacaactacatcatc |
333 |
Q |
| |
|
||||||||||| | |||||| ||||||||| ||||||||||||||| ||| |||||||| ||||||||| |
|
|
| T |
2568434 |
acaaccaatttccgtaaacctc--ctcaattttattttcaatttcacctgttatcacaacaagtacatcatc |
2568503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 200 - 291
Target Start/End: Complemental strand, 2624722 - 2624631
Alignment:
| Q |
200 |
ttatgttagaaaagcctacaattttgatgattgtagaaatgaaatttttaagaagctaaggtgaaaccaatttccctgaacctcttctcaat |
291 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2624722 |
ttatgttagaaaagcctacaattttcataattgtagaaatgaaatttttaggaagctaaggtgaaaccaatttccctgaacctcttctcaat |
2624631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 304
Target Start/End: Original strand, 2671688 - 2671846
Alignment:
| Q |
142 |
aaaaaaggatttaactatattacaatataacgatatagtaattagcataggaattgtcttatgttagaaaagcctacaattttgatgattgtagaaatga |
241 |
Q |
| |
|
|||||| ||| |||||||||||||||| ||| ||||||| |||||||||||| |||||| ||||| || |||||||||||||||||| | |||| |
|
|
| T |
2671688 |
aaaaaaagatgtaactatattacaatagaacc-----gtaattaacataggaattgtgctatgtttgaaaaaccaacaattttgatgattgtacagatga |
2671782 |
T |
|
| Q |
242 |
aatttttaagaagct-aaggtgaaaccaatttccctgaacctcttctcaattttcttttcaatt |
304 |
Q |
| |
|
|| ||| |||||| |||| | || |||| ||| | ||||||||||||||||||||||||||| |
|
|
| T |
2671783 |
aaacttttggaagctaaaggagcaaacaatctccttaaacctcttctcaattttcttttcaatt |
2671846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 317
Target Start/End: Original strand, 2595962 - 2596043
Alignment:
| Q |
236 |
aaatgaaatttttaagaagctaaggtgaaaccaatttccctgaacctcttctcaattttcttttcaatttcacctattacca |
317 |
Q |
| |
|
||||||||||||| |||||||| | || | ||||| ||| |||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
2595962 |
aaatgaaatttttcggaagctaaaggaaatctaattttcctaaacctcttctcatttttcttttcaattttacctattacca |
2596043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 2440872 - 2440818
Alignment:
| Q |
280 |
cctcttctcaattttcttttcaatttcacctattaccacaacaactacatcatcaa |
335 |
Q |
| |
|
|||||||||| ||||||||| |||||||| |||||||||||||||| ||||||||| |
|
|
| T |
2440872 |
cctcttctcatttttctttt-aatttcacatattaccacaacaactccatcatcaa |
2440818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 2568258 - 2568324
Alignment:
| Q |
37 |
taagtgtcatctccctaactccgcttattttctaggtgtgagccatggttttattcatatatgatat |
103 |
Q |
| |
|
|||||||||||||||||||||| ||||| || ||||| |||||| | ||||| ||||||||||||| |
|
|
| T |
2568258 |
taagtgtcatctccctaactcccattattctcaaggtgggagccaagattttaatcatatatgatat |
2568324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 2671592 - 2671633
Alignment:
| Q |
32 |
ttcaataagtgtcatctccctaactccgcttattttctaggt |
73 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
2671592 |
ttcaataagtgtcatctccctaactccccttattttcaaggt |
2671633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 4959 - 5130
Alignment:
| Q |
19 |
tgaacaagactacttcaataagtgtcatctccctaactccgcttattttctaggtgtgagccatggttttattcatatatgatatgatatagagatagat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4959 |
tgaacaagactacttcaataagtgtcatctccctaactccgcttattttctaggtgggagccatggttttattcatatatgatatgatatagaaatagat |
5058 |
T |
|
| Q |
119 |
agagcaaaaattatacttagttgaaaaaaggatttaactatattacaatataacgatatagtaattagcata |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5059 |
agagcaaaaattatacttagttgaaaaaaggatttaactatattacaatataacgatatagtaattagcata |
5130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University