View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17799_low_7 (Length: 297)
Name: NF17799_low_7
Description: NF17799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17799_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 34398583 - 34398320
Alignment:
| Q |
19 |
aaaatgcagagtgttatggtaattaaacatagataagaaacagaaattatgttggcataacaacctttgtaagtactgatgagtgagttctccactagta |
118 |
Q |
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| T |
34398583 |
aaaatgcagagtgttatggtaattaaacatagataaaaaacagaaattatgttggcataacaacctttgtaagtactgatgagtgagttctccactagta |
34398484 |
T |
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| Q |
119 |
attgctcctagaaaaagagaagcatcaaaaccaagacttttaactttttcaagagtgacagatgaacgtcttgaggaattgcttatgatcaccatcttcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34398483 |
attgctcctagaaaaagagaagcatcaaaaccaagacttttaactttttcaagagtgacagatgaacgtcttgaggaattgcttatgatcaccatcttcc |
34398384 |
T |
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| Q |
219 |
cacccgtctttgcaatattttctactaacaaaattaaaacaaaaaag-aaatttaggatcatgt |
281 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34398383 |
caccagtctttgcaatattttctactaacaaaattaaaacaaaaaagaaaatttaggatcatgt |
34398320 |
T |
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